BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03270.1
Length=690
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892230 jgi|Araly1|892230|Al_scaffold_0006_226 869 0.0
> Ahg892230 jgi|Araly1|892230|Al_scaffold_0006_226
Length=624
Score = 869 bits (470), Expect = 0.0
Identities = 566/610 (93%), Gaps = 16/610 (3%)
Strand=Plus/Plus
Query 28 ATGACGAAGAAACAAAGTTCAAGGTTTAAGAGCATTTGCGTCTTTTGTGGGAGTAGCAAT 87
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACGAAGAAACAAAGTTCAAGGTTTAAGAGCATTTGCGTCTTTTGTGGGAGTAGCAAT 60
Query 88 GGGAACAAAGCTAGTTATCAAGATGCAGCCATTGATTTGGCCAAGGAACTGGTGATGAGG 147
|| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 61 GGCAACAAAGCTAGTTATCAAGATGCAGCCATTGATTTGGCCAAAGAATTGGTGATGAGG 120
Query 148 AAGATTGATCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTCAAGCT 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGATTGATCTTGTTTATGGTGGAGGAAGCATAGGTTTAATGGGTTTGGTGTCTCAAGCT 180
Query 208 GTTCATGATGGTGGTCGTCA---TA----A-TAATAAC-AA--TAATGGTAATG-ATGA- 254
|||||||||||||||||||| || | | || | || | | | || | ||
Sbjct 181 GTTCATGATGGTGGTCGTCATGTTATTGGAGTCATCCCAAAGCTCCTCATGTTGCAAGAG 240
Query 255 TGCTCTTTTTTGTCACTCTGTCAATGTCTCGCAAACAAACTCAAAGTTAACTGGAGAAAC 314
||||| |||||||| ||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 241 TGCTC-TTTTTGTCTCTCTGTCAATGTCTCGCAAACAAACACAAAGATAACTGGAGAAAC 299
Query 315 AGTAGGAGAAGTGAAGGAAGTTGCAGACATGCATCAGAGAAAAGCTGTGATGGCTAAGCA 374
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 AGTAGGAGAAGTGAGGGAAGTTGCAGACATGCATCAGAGAAAAGCTGAGATGGCTAAGCA 359
Query 375 TTCTGATGCTTTCATTACTTTGCCTGGTGGCTATGGTACACTAGAGGAGCTACTTGAAGT 434
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTCTGATGCTTTCATTACTTTGCCTGGTGGCTATGGTACACTAGAGGAGCTACTTGAAGT 419
Query 435 GATAACTTGGGCACAACTTGGTATCCATGATAAACCGGTCGGTTTATTAAACGTTGATGG 494
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 420 GATAACTTGGGCACAACTTGGTATCCATAATAAACCGGTCGGTTTATTAAACGTTGATGG 479
Query 495 ATATTACGATGCATTGCTGTTATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCC 554
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 480 ATATTACGATGCATTGCTATCATTCATCGACAAAGCCGTCGAAGAGGGATTTATTCTTCC 539
Query 555 AACCGCTCGACATATTATCGTATCTGCACCAACCGCAAGAGAGTTGTTTATAAAATTGGA 614
||||||| ||||||||||||| || || |||||||||| ||| ||||||| |||||||||
Sbjct 540 AACCGCTGGACATATTATCGTGTCCGCGCCAACCGCAAAAGAATTGTTTAAAAAATTGGA 599
Query 615 GTTGAATATG 624
| |||||||
Sbjct 600 G--GAATATG 607
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25351739805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5