BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03285.1

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487100 jgi|Araly1|487100|fgenesh2_kg.6__234__AT5G03285.1          300    3e-81


> Ahg487100 jgi|Araly1|487100|fgenesh2_kg.6__234__AT5G03285.1
Length=204

 Score =  300 bits (162),  Expect = 3e-81
 Identities = 190/204 (93%), Gaps = 0/204 (0%)
 Strand=Plus/Plus

Query  1    ATGGGTTATGTAATCTACATATCGTTCCCGGCGATTCTTCTCCTTCTGATCGTCGCTATC  60
            ||||||||||| |||||| ||||||| |||||||||||||||||| ||||||| ||||||
Sbjct  1    ATGGGTTATGTGATCTACTTATCGTTTCCGGCGATTCTTCTCCTTTTGATCGTAGCTATC  60

Query  61   GCCTTTTATCTCATCGGACGAAAAATCGGCCGGAGAGAAGGGATTCAATCAACGTCGCAG  120
            || ||||||||||||||| |||||||||||||||||||||| ||  ||||| ||||||||
Sbjct  61   GCTTTTTATCTCATCGGAAGAAAAATCGGCCGGAGAGAAGGTATAGAATCAGCGTCGCAG  120

Query  121  TTACACTACGGACCGCCGTTGGCTAATTTTCCGGCACCTGCACCACCGCATAAAGCTATG  180
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  121  TTTCACTACGGACCGCCGTTGGCTAATTTCCCGGCACCTGCACCACCGCATAAAGCTATG  180

Query  181  GAGAAGCCACCGGAGCCGGTTTAG  204
            ||||||||||| ||||||||||||
Sbjct  181  GAGAAGCCACCTGAGCCGGTTTAG  204



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 6912075241


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5