BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03300.1 Length=1348 Score E Sequences producing significant alignments: (Bits) Value Ahg939709 jgi|Araly1|939709|scaffold_600253.1 1892 0.0 Ahg920654 jgi|Araly1|920654|scaffold_101935.1 1862 0.0 Ahg478305 jgi|Araly1|478305|fgenesh2_kg.3__1006__AT3G09820.1 1219 0.0 > Ahg939709 jgi|Araly1|939709|scaffold_600253.1 Length=1105 Score = 1892 bits (1024), Expect = 0.0 Identities = 1068/1090 (98%), Gaps = 0/1090 (0%) Strand=Plus/Plus Query 124 TCATCATCATGGCTTCTTCTTCTAACTACGATGGAATCCTTCTCGGTATGGGTAACCCAC 183 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 16 TCATCATCATGGCTTCTTCTTCTAACTACGATGGAATCCTTCTCGGAATGGGTAACCCAC 75 Query 184 TCCTCGATATCTCTGCCGTCGTCGACGACGAATTTCTCACCAAATACGACATCAAGTTGA 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 76 TCCTCGATATCTCTGCCGTCGTCGACGACGAATTTCTCACCAAATACGACATCAAGTTGA 135 Query 244 ACAATGCGATTCTCGCGGAAGACAAACATTTGCCCATGTATGATGAGATGAGTAGCAAGT 303 |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| Sbjct 136 ACAATGCGATTCTCGCTGAGGACAAACATTTGCCCATGTATGATGAGATGAGTAGCAAGT 195 Query 304 TCAATGTTGAATACATTGCCGGAGGTGCTACTCAGAACTCAATCAAAGTGGCTCAGTGGA 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 196 TCAATGTTGAATACATTGCCGGAGGTGCTACTCAGAACTCAATCAAAGTGGCTCAGTGGA 255 Query 364 TGCTTCAAATTCCTGGGGCAACCAGTTACATGGGATCCATTGGAAAGGACAAATATGGAG 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 256 TGCTTCAAATTCCTGGGGCAACCAGTTACATGGGATCCATTGGAAAGGACAAATATGGAG 315 Query 424 AGGCCATGAAGAAGGATGCTACAGCAGCTGGTGTTAATGTTCACTATTATGAAGATGAGT 483 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 316 AGGCCATGAAGAAGGATGCTACAGCAGCTGGTGTCAATGTTCACTATTATGAAGATGAGT 375 Query 484 CGGCACCTACTGGAACTTGTGGTGTCTGTGTTGTTGGTGGAGAAAGGTCTCTTATTGCGA 543 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 376 CGGCACCTACTGGAACTTGCGGTGTCTGTGTTGTTGGTGGAGAAAGGTCTCTTATTGCGA 435 Query 544 ATCTTTCAGCTGCAAACTGCTACAAGGTTGATCACCTTAAGAAGCCTGAAAACTGGGCAT 603 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 436 ATCTTTCAGCTGCAAACTGCTACAAGGTTGATCACCTTAAGAAGCCTGAAAACTGGGCAT 495 Query 604 TGGTTGAGAAGGCCAAGTTCTACTACATTGCTGGATTCTTCCTCACAGTATCGCCTGAAT 663 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 496 TGGTTGAGAAGGCCAAGTTCTATTACATTGCTGGATTCTTCCTCACAGTATCGCCTGAAT 555 Query 664 CCATTCAGTTGGTATCTGAGCACGCTGCTGCAAACAACAAGGTGTTCACAATGAACCTTT 723 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 556 CCATTCAGTTGGTATCTGAGCATGCTGCTGCAAACAACAAGGTGTTCACAATGAACCTTT 615 Query 724 CTGCTCCATTCATCTGTGAATTCTTCAAAGATGTGCAGGAGAAGTTCTTGCCATACATGG 783 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 616 CTGCTCCATTCATTTGTGAATTCTTCAAAGATGTGCAGGAGAAGTTCTTGCCATACATGG 675 Query 784 ACTTCGTTTTCGGCAATGAGACAGAGGCAAGAACCTTCTCTAGGGTTCATGGCTGGGAGA 843 ||||||||||||||||||| ||||| |||||||||||||| |||||||| |||||||||| Sbjct 676 ACTTCGTTTTCGGCAATGAAACAGAAGCAAGAACCTTCTCCAGGGTTCACGGCTGGGAGA 735 Query 844 CTGAAGATGTCGAACAAATAGCCATCAAGATTTCACAGCTTCCCAAGGCCACAGGAACAT 903 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 736 CTGAAGATGTCGAACAAATAGCCATCAAGATTTCACAGCTTCCCAAGGCCACGGGAACAT 795 Query 904 ACAAGAGGACCACTGTGATTACACAGGGCGCTGATCCAGTGGTTGTTGCTGAAGATGGAA 963 ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 796 ACAAGAGGACCACTGTGATAACACAGGGCGCAGATCCAGTGGTTGTTGCTGAAGATGGAA 855 Query 964 AGGTGAAGAAATATCCAGTCATCCCTCTCCCAAAGGAGAAGCTGGTTGACACCAACGGTG 1023 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 856 AGGTGAAGAAATATCCAGTCATCCCTCTCCCAAAAGAGAAGCTGGTTGACACCAACGGTG 915 Query 1024 CAGGTGATGCATTTGTGGGAGGATTTATGTCACAGTTGGTGAAAGAGAAATCGATTGAGG 1083 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 916 CAGGTGATGCATTTGTGGGAGGATTCATGTCACAGTTGGTGAAAGAGAAATCGATTGAGG 975 Query 1084 AATGCGTGAAGGCTGGATGCTATGCGTCGAACGTGGTGATCCAAAGATCTGGCTGCACTT 1143 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 976 AATGCGTGAAAGCTGGATGCTATGCGTCGAACGTGGTGATCCAAAGATCTGGCTGCACTT 1035 Query 1144 ACCCTGAGAAGCCCGACTTTAACTAAACAATTGGGTTACCCTCAGTTTTGTGATATCTTC 1203 |||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||| Sbjct 1036 ACCCTGAGAAGCCCGACTTTAAATAAACTATTGGGTCATCCTCAGTTTTGTGATATCTTC 1095 Query 1204 CAAATAAAAC 1213 |||||||||| Sbjct 1096 CAAATAAAAC 1105 > Ahg920654 jgi|Araly1|920654|scaffold_101935.1 Length=1106 Score = 1862 bits (1008), Expect = 0.0 Identities = 1076/1108 (97%), Gaps = 7/1108 (1%) Strand=Plus/Plus Query 90 ATCCCAGATCTGAATCTCAA-C-CT--AAACCTCAGAT-TCATCATCATGGCTTCTTCTT 144 ||||||||||||||||| || | || ||| ||| | ||||||||||||||||||||| Sbjct 1 ATCCCAGATCTGAATCTAAACCTCTCAAAATCTC--TTCTCATCATCATGGCTTCTTCTT 58 Query 145 CTAACTACGATGGAATCCTTCTCGGTATGGGTAACCCACTCCTCGATATCTCTGCCGTCG 204 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 59 CTAACTACGATGGAATCCTTCTCGGAATGGGTAACCCACTCCTCGATATCTCTGCCGTCG 118 Query 205 TCGACGACGAATTTCTCACCAAATACGACATCAAGTTGAACAATGCGATTCTCGCGGAAG 264 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | Sbjct 119 TCGACGACGAATTTCTCACCAAATACGACATCAAGTTGAACAATGCGATTCTCGCTGAGG 178 Query 265 ACAAACATTTGCCCATGTATGATGAGATGAGTAGCAAGTTCAATGTTGAATACATTGCCG 324 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 179 ACAAACATTTGCCCATGTATGATGAGATGAGTAGCAAGTTCAATGTTGAATACATTGCCG 238 Query 325 GAGGTGCTACTCAGAACTCAATCAAAGTGGCTCAGTGGATGCTTCAAATTCCTGGGGCAA 384 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 239 GAGGTGCTACTCAGAACTCAATCAAAGTGGCTCAGTGGATGCTTCAAATTCCTGGGGCAA 298 Query 385 CCAGTTACATGGGATCCATTGGAAAGGACAAATATGGAGAGGCCATGAAGAAGGATGCTA 444 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 299 CCAGTTACATGGGATCCATTGGAAAGGACAAATATGGAGAGGCCATGAAGAAGGATGCTA 358 Query 445 CAGCAGCTGGTGTTAATGTTCACTATTATGAAGATGAGTCGGCACCTACTGGAACTTGTG 504 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 359 CAGCAGCTGGTGTCAATGTTCACTATTATGAAGATGAGTCGGCACCTACTGGAACTTGCG 418 Query 505 GTGTCTGTGTTGTTGGTGGAGAAAGGTCTCTTATTGCGAATCTTTCAGCTGCAAACTGCT 564 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 419 GTGTCTGTGTTGTTGGTGGAGAAAGGTCTCTTATTGCGAATCTTTCAGCTGCAAACTGCT 478 Query 565 ACAAGGTTGATCACCTTAAGAAGCCTGAAAACTGGGCATTGGTTGAGAAGGCCAAGTTCT 624 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 ACAAGGTTGATCACCTTAAGAAGCCTGAAAACTGGGCATTGGTTGAGAAGGCCAAGTTCT 538 Query 625 ACTACATTGCTGGATTCTTCCTCACAGTATCGCCTGAATCCATTCAGTTGGTATCTGAGC 684 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 539 ATTACATTGCTGGATTCTTCCTCACAGTATCGCCTGAATCCATTCAGTTGGTATCTGAGC 598 Query 685 ACGCTGCTGCAAACAACAAGGTGTTCACAATGAACCTTTCTGCTCCATTCATCTGTGAAT 744 | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 599 ATGCTGCTGCAAACAACAAGGTGTTCACAATGAACCTTTCTGCTCCATTCATTTGTGAAT 658 Query 745 TCTTCAAAGATGTGCAGGAGAAGTTCTTGCCATACATGGACTTCGTTTTCGGCAATGAGA 804 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 659 TCTTCAAAGATGTGCAGGAGAAGTTCTTGCCATACATGGACTTCGTTTTCGGCAATGAAA 718 Query 805 CAGAGGCAAGAACCTTCTCTAGGGTTCATGGCTGGGAGACTGAAGATGTCGAACAAATAG 864 |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 719 CAGAAGCAAGAACCTTCTCCAGGGTTCACGGCTGGGAGACTGAAGATGTCGAACAAATAG 778 Query 865 CCATCAAGATTTCACAGCTTCCCAAGGCCACAGGAACATACAAGAGGACCACTGTGATTA 924 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 779 CCATCAAGATTTCACAGCTTCCCAAGGCCACGGGAACATACAAGAGGACCACTGTGATAA 838 Query 925 CACAGGGCGCTGATCCAGTGGTTGTTGCTGAAGATGGAAAGGTGAAGAAATATCCAGTCA 984 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 CACAGGGCGCAGATCCAGTGGTTGTTGCTGAAGATGGAAAGGTGAAGAAATATCCAGTCA 898 Query 985 TCCCTCTCCCAAAGGAGAAGCTGGTTGACACCAACGGTGCAGGTGATGCATTTGTGGGAG 1044 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 TCCCTCTCCCAAAAGAGAAGCTGGTTGACACCAACGGTGCAGGTGATGCATTTGTGGGAG 958 Query 1045 GATTTATGTCACAGTTGGTGAAAGAGAAATCGATTGAGGAATGCGTGAAGGCTGGATGCT 1104 |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 959 GATTCATGTCACAGTTGGTGAAAGAGAAATCGATTGAGGAATGCGTGAAAGCTGGATGCT 1018 Query 1105 ATGCGTCGAACGTGGTGATCCAAAGATCTGGCTGCACTTACCCTGAGAAGCCCGACTTTA 1164 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1019 ATGCGTCGAACGTGGTGATCCAAAGATCTGGCTGCACTTACCCTGAGAAGCCCGACTTTA 1078 Query 1165 ACTAAACAATTGGGTTACCCTCAGTTTT 1192 ||||||| ||||||| | |||||| ||| Sbjct 1079 ACTAAACTATTGGGTCATCCTCAGCTTT 1106 > Ahg478305 jgi|Araly1|478305|fgenesh2_kg.3__1006__AT3G09820.1 Length=1494 Score = 1219 bits (660), Expect = 0.0 Identities = 931/1061 (88%), Gaps = 21/1061 (2%) Strand=Plus/Plus Query 119 CAGATTCATCAT-CATGGCTTCTTCTTCTAACTACGATGGAATCCTTCTCGGTATGGGTA 177 |||| | ||||| ||||||||| | ||| | | |||||| |||||| | || ||||| | Sbjct 130 CAGA-TAATCATCCATGGCTTC--C-TCTGATTTCGATGGTATCCTTTTGGGAATGGGCA 185 Query 178 ACCCACTCCTCGATATCTCTGCCGTCGTCGACGACGAATTTCTC-ACCAAATACGACATC 236 |||||||||| || ||||||||||||||||| | || |||||| | ||||||||||||| Sbjct 186 ACCCACTCCTGGACGTCTCTGCCGTCGTCGACCAAGAGTTTCTCGA-CAAATACGACATC 244 Query 237 AAGTTGAACAATGCGATTCTCGCGGAAGACAAACATTTGCCCATGTATGATGAGATGAG- 295 || |||||||||||||||||||| || ||||||||||| |||||||| ||||| ||||| Sbjct 245 AAATTGAACAATGCGATTCTCGCAGAGGACAAACATTTACCCATGTACGATGAAATGAGC 304 Query 296 TAGCAAGTTCAATGTTGAATACATTGCCGGAGGTGCTACTCAGAACTCAATCAAAGTGGC 355 || ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 305 CAG-AAGTTCAATGTTGAATACATTGCTGGAGGTGCTACCCAGAACTCAATCAAAGTGGC 363 Query 356 TCAGTGGATGCTTCAAATTCCTGGGGCAACCAGTTACATGGGATCCATTGGAAAGGACAA 415 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 364 CCAGTGGATGCTTCAAATTCCTGGGGCAACCAGTTACATGGGATCAATTGGAAAGGACAA 423 Query 416 ATATGGAGAGGCCATGAAGAAGGATGCTACAGCAGCTGGTGTTAATGTTCACTATTATGA 475 ||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| || Sbjct 424 ATACGGAGAGGCAATGAAGAAGGATGCTACAGCAGCTGGTGTCAATGTCCACTATTACGA 483 Query 476 AGATGAGTCGGCACCTACTGGAACTTGTGGTGTCTGTGTTGTTGGTGGAGAAAGGTCTCT 535 ||||||||| || |||| |||||||| |||||||||||| |||||||||||||||| || Sbjct 484 AGATGAGTCAACATCTACCGGAACTTGCGGTGTCTGTGTTCTTGGTGGAGAAAGGTCGCT 543 Query 536 TATTGCGAATCTTTCAGCTGCAAACTGCTACAAGGTTGATCACCTT-AAGAAGCCTGAAA 594 |||||||||||||| ||||| || |||||||||||||| || ||| |||||||| || | Sbjct 544 CATTGCGAATCTTTCTGCTGCTAATTGCTACAAGGTTGAACA-CTTGAAGAAGCCAGAGA 602 Query 595 ACTGGGCAT-TGGTTGAGAAGGCCAAGTTCTACTACATTGCTGGATTCTTCCTCACAGTA 653 ||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 603 ACTGGGC-TCTTGTTGAGAAGGCCAAGTTCTACTACATTGCTGGATTCTTCCTCACAGTA 661 Query 654 TCGCCTGAATCCATTCAGTTGGTATC-TGAGCACGCTGCTGCAAACAACAAGGTGTTCAC 712 || || |||||||||||||||||| | ||| || || ||||||||||||||||||||||| Sbjct 662 TCACCAGAATCCATTCAGTTGGTA-CGTGAACATGCCGCTGCAAACAACAAGGTGTTCAC 720 Query 713 AATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAAGATGTGCAGGAGAAGTTCTT 772 |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | Sbjct 721 GATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAAGATGTTCAGGAGAAGTGCAT 780 Query 773 GCCATACATGGACT-TCGTTTTCGGCAATGAGACAGAGGCAAGAACCTTCTCTAGGGTTC 831 || |||||||||| | |||| ||||||||||| ||||||||||||||||| ||||||| Sbjct 781 ACCGTACATGGACTATATTTTT-GGCAATGAGACCGAGGCAAGAACCTTCTCCAGGGTTC 839 Query 832 ATGGCTGGGAGACTGAAGATGTCGAACAAATAGCCATCAAGATTTCACAGCTT-CCCAAG 890 | |||||||||||||| ||||| || ||||||||||||||||| || ||| || ||||| Sbjct 840 ACGGCTGGGAGACTGATGATGTTGAGCAAATAGCCATCAAGATGTCCCAG-TTGCCCAAA 898 Query 891 GCCACAGGAACATACAAGAGGACCACTGTGATTACACAGGGCGCTGATCCAGTGGTTGTT 950 ||||| || || ||||||||||| |||||||||||||| ||||| || || |||||||| Sbjct 899 GCCACTGGGACGTACAAGAGGACTACTGTGATTACACAAGGCGCAGACCCCGTGGTTGTC 958 Query 951 GCTGAAGATGGAAAGGTGAAGAAATATCCAGTCATCCCTCTCCCAAAGGAGAAGCTGGTT 1010 || || |||||||| |||||||| || ||||||||||||||||| ||||||||||| ||| Sbjct 959 GCCGAGGATGGAAAAGTGAAGAAGTACCCAGTCATCCCTCTCCCCAAGGAGAAGCTTGTT 1018 Query 1011 GACACCAACGGTGCAGGTGATGCATTTGTGGGAGGATTTATGTCACAGTTGGTGAAAGAG 1070 ||||||||||||||||||||||| ||||| ||||| ||| | || ||| ||||| | | | Sbjct 1019 GACACCAACGGTGCAGGTGATGCGTTTGTAGGAGGGTTTCTTTCGCAGCTGGTGCATG-G 1077 Query 1071 AAATCG-ATTGAGGAATGCGTGAAGGCTGGATGCTATGCGTCGAACGTGGTGATCCAAAG 1129 ||| | ||||| || ||||||| ||| |||||||| || || ||||| |||||||| || Sbjct 1078 AAAGGGGATTGAAGAGTGCGTGAGGGCGGGATGCTACGCTTCAAACGTAGTGATCCAGAG 1137 Query 1130 ATCTGGCTGCACTTACCCTGAGAAGCCCGACTTTAACTAAA 1170 ||||| ||||||||||||||||| || ||||| ||||||| Sbjct 1138 GTCTGGATGCACTTACCCTGAGAAACCAGACTTCAACTAAA 1178 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 50436619191 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5