BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03300.1
Length=1348
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939709 jgi|Araly1|939709|scaffold_600253.1 1892 0.0
Ahg920654 jgi|Araly1|920654|scaffold_101935.1 1862 0.0
Ahg478305 jgi|Araly1|478305|fgenesh2_kg.3__1006__AT3G09820.1 1219 0.0
> Ahg939709 jgi|Araly1|939709|scaffold_600253.1
Length=1105
Score = 1892 bits (1024), Expect = 0.0
Identities = 1068/1090 (98%), Gaps = 0/1090 (0%)
Strand=Plus/Plus
Query 124 TCATCATCATGGCTTCTTCTTCTAACTACGATGGAATCCTTCTCGGTATGGGTAACCCAC 183
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 16 TCATCATCATGGCTTCTTCTTCTAACTACGATGGAATCCTTCTCGGAATGGGTAACCCAC 75
Query 184 TCCTCGATATCTCTGCCGTCGTCGACGACGAATTTCTCACCAAATACGACATCAAGTTGA 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 76 TCCTCGATATCTCTGCCGTCGTCGACGACGAATTTCTCACCAAATACGACATCAAGTTGA 135
Query 244 ACAATGCGATTCTCGCGGAAGACAAACATTTGCCCATGTATGATGAGATGAGTAGCAAGT 303
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 136 ACAATGCGATTCTCGCTGAGGACAAACATTTGCCCATGTATGATGAGATGAGTAGCAAGT 195
Query 304 TCAATGTTGAATACATTGCCGGAGGTGCTACTCAGAACTCAATCAAAGTGGCTCAGTGGA 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 196 TCAATGTTGAATACATTGCCGGAGGTGCTACTCAGAACTCAATCAAAGTGGCTCAGTGGA 255
Query 364 TGCTTCAAATTCCTGGGGCAACCAGTTACATGGGATCCATTGGAAAGGACAAATATGGAG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 256 TGCTTCAAATTCCTGGGGCAACCAGTTACATGGGATCCATTGGAAAGGACAAATATGGAG 315
Query 424 AGGCCATGAAGAAGGATGCTACAGCAGCTGGTGTTAATGTTCACTATTATGAAGATGAGT 483
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 316 AGGCCATGAAGAAGGATGCTACAGCAGCTGGTGTCAATGTTCACTATTATGAAGATGAGT 375
Query 484 CGGCACCTACTGGAACTTGTGGTGTCTGTGTTGTTGGTGGAGAAAGGTCTCTTATTGCGA 543
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 376 CGGCACCTACTGGAACTTGCGGTGTCTGTGTTGTTGGTGGAGAAAGGTCTCTTATTGCGA 435
Query 544 ATCTTTCAGCTGCAAACTGCTACAAGGTTGATCACCTTAAGAAGCCTGAAAACTGGGCAT 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 ATCTTTCAGCTGCAAACTGCTACAAGGTTGATCACCTTAAGAAGCCTGAAAACTGGGCAT 495
Query 604 TGGTTGAGAAGGCCAAGTTCTACTACATTGCTGGATTCTTCCTCACAGTATCGCCTGAAT 663
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 496 TGGTTGAGAAGGCCAAGTTCTATTACATTGCTGGATTCTTCCTCACAGTATCGCCTGAAT 555
Query 664 CCATTCAGTTGGTATCTGAGCACGCTGCTGCAAACAACAAGGTGTTCACAATGAACCTTT 723
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 556 CCATTCAGTTGGTATCTGAGCATGCTGCTGCAAACAACAAGGTGTTCACAATGAACCTTT 615
Query 724 CTGCTCCATTCATCTGTGAATTCTTCAAAGATGTGCAGGAGAAGTTCTTGCCATACATGG 783
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 616 CTGCTCCATTCATTTGTGAATTCTTCAAAGATGTGCAGGAGAAGTTCTTGCCATACATGG 675
Query 784 ACTTCGTTTTCGGCAATGAGACAGAGGCAAGAACCTTCTCTAGGGTTCATGGCTGGGAGA 843
||||||||||||||||||| ||||| |||||||||||||| |||||||| ||||||||||
Sbjct 676 ACTTCGTTTTCGGCAATGAAACAGAAGCAAGAACCTTCTCCAGGGTTCACGGCTGGGAGA 735
Query 844 CTGAAGATGTCGAACAAATAGCCATCAAGATTTCACAGCTTCCCAAGGCCACAGGAACAT 903
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 736 CTGAAGATGTCGAACAAATAGCCATCAAGATTTCACAGCTTCCCAAGGCCACGGGAACAT 795
Query 904 ACAAGAGGACCACTGTGATTACACAGGGCGCTGATCCAGTGGTTGTTGCTGAAGATGGAA 963
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 796 ACAAGAGGACCACTGTGATAACACAGGGCGCAGATCCAGTGGTTGTTGCTGAAGATGGAA 855
Query 964 AGGTGAAGAAATATCCAGTCATCCCTCTCCCAAAGGAGAAGCTGGTTGACACCAACGGTG 1023
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 856 AGGTGAAGAAATATCCAGTCATCCCTCTCCCAAAAGAGAAGCTGGTTGACACCAACGGTG 915
Query 1024 CAGGTGATGCATTTGTGGGAGGATTTATGTCACAGTTGGTGAAAGAGAAATCGATTGAGG 1083
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 916 CAGGTGATGCATTTGTGGGAGGATTCATGTCACAGTTGGTGAAAGAGAAATCGATTGAGG 975
Query 1084 AATGCGTGAAGGCTGGATGCTATGCGTCGAACGTGGTGATCCAAAGATCTGGCTGCACTT 1143
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 AATGCGTGAAAGCTGGATGCTATGCGTCGAACGTGGTGATCCAAAGATCTGGCTGCACTT 1035
Query 1144 ACCCTGAGAAGCCCGACTTTAACTAAACAATTGGGTTACCCTCAGTTTTGTGATATCTTC 1203
|||||||||||||||||||||| ||||| ||||||| | |||||||||||||||||||||
Sbjct 1036 ACCCTGAGAAGCCCGACTTTAAATAAACTATTGGGTCATCCTCAGTTTTGTGATATCTTC 1095
Query 1204 CAAATAAAAC 1213
||||||||||
Sbjct 1096 CAAATAAAAC 1105
> Ahg920654 jgi|Araly1|920654|scaffold_101935.1
Length=1106
Score = 1862 bits (1008), Expect = 0.0
Identities = 1076/1108 (97%), Gaps = 7/1108 (1%)
Strand=Plus/Plus
Query 90 ATCCCAGATCTGAATCTCAA-C-CT--AAACCTCAGAT-TCATCATCATGGCTTCTTCTT 144
||||||||||||||||| || | || ||| ||| | |||||||||||||||||||||
Sbjct 1 ATCCCAGATCTGAATCTAAACCTCTCAAAATCTC--TTCTCATCATCATGGCTTCTTCTT 58
Query 145 CTAACTACGATGGAATCCTTCTCGGTATGGGTAACCCACTCCTCGATATCTCTGCCGTCG 204
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 59 CTAACTACGATGGAATCCTTCTCGGAATGGGTAACCCACTCCTCGATATCTCTGCCGTCG 118
Query 205 TCGACGACGAATTTCTCACCAAATACGACATCAAGTTGAACAATGCGATTCTCGCGGAAG 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 119 TCGACGACGAATTTCTCACCAAATACGACATCAAGTTGAACAATGCGATTCTCGCTGAGG 178
Query 265 ACAAACATTTGCCCATGTATGATGAGATGAGTAGCAAGTTCAATGTTGAATACATTGCCG 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 ACAAACATTTGCCCATGTATGATGAGATGAGTAGCAAGTTCAATGTTGAATACATTGCCG 238
Query 325 GAGGTGCTACTCAGAACTCAATCAAAGTGGCTCAGTGGATGCTTCAAATTCCTGGGGCAA 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GAGGTGCTACTCAGAACTCAATCAAAGTGGCTCAGTGGATGCTTCAAATTCCTGGGGCAA 298
Query 385 CCAGTTACATGGGATCCATTGGAAAGGACAAATATGGAGAGGCCATGAAGAAGGATGCTA 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 CCAGTTACATGGGATCCATTGGAAAGGACAAATATGGAGAGGCCATGAAGAAGGATGCTA 358
Query 445 CAGCAGCTGGTGTTAATGTTCACTATTATGAAGATGAGTCGGCACCTACTGGAACTTGTG 504
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 359 CAGCAGCTGGTGTCAATGTTCACTATTATGAAGATGAGTCGGCACCTACTGGAACTTGCG 418
Query 505 GTGTCTGTGTTGTTGGTGGAGAAAGGTCTCTTATTGCGAATCTTTCAGCTGCAAACTGCT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GTGTCTGTGTTGTTGGTGGAGAAAGGTCTCTTATTGCGAATCTTTCAGCTGCAAACTGCT 478
Query 565 ACAAGGTTGATCACCTTAAGAAGCCTGAAAACTGGGCATTGGTTGAGAAGGCCAAGTTCT 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ACAAGGTTGATCACCTTAAGAAGCCTGAAAACTGGGCATTGGTTGAGAAGGCCAAGTTCT 538
Query 625 ACTACATTGCTGGATTCTTCCTCACAGTATCGCCTGAATCCATTCAGTTGGTATCTGAGC 684
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 ATTACATTGCTGGATTCTTCCTCACAGTATCGCCTGAATCCATTCAGTTGGTATCTGAGC 598
Query 685 ACGCTGCTGCAAACAACAAGGTGTTCACAATGAACCTTTCTGCTCCATTCATCTGTGAAT 744
| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 599 ATGCTGCTGCAAACAACAAGGTGTTCACAATGAACCTTTCTGCTCCATTCATTTGTGAAT 658
Query 745 TCTTCAAAGATGTGCAGGAGAAGTTCTTGCCATACATGGACTTCGTTTTCGGCAATGAGA 804
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 659 TCTTCAAAGATGTGCAGGAGAAGTTCTTGCCATACATGGACTTCGTTTTCGGCAATGAAA 718
Query 805 CAGAGGCAAGAACCTTCTCTAGGGTTCATGGCTGGGAGACTGAAGATGTCGAACAAATAG 864
|||| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 719 CAGAAGCAAGAACCTTCTCCAGGGTTCACGGCTGGGAGACTGAAGATGTCGAACAAATAG 778
Query 865 CCATCAAGATTTCACAGCTTCCCAAGGCCACAGGAACATACAAGAGGACCACTGTGATTA 924
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 779 CCATCAAGATTTCACAGCTTCCCAAGGCCACGGGAACATACAAGAGGACCACTGTGATAA 838
Query 925 CACAGGGCGCTGATCCAGTGGTTGTTGCTGAAGATGGAAAGGTGAAGAAATATCCAGTCA 984
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 CACAGGGCGCAGATCCAGTGGTTGTTGCTGAAGATGGAAAGGTGAAGAAATATCCAGTCA 898
Query 985 TCCCTCTCCCAAAGGAGAAGCTGGTTGACACCAACGGTGCAGGTGATGCATTTGTGGGAG 1044
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 TCCCTCTCCCAAAAGAGAAGCTGGTTGACACCAACGGTGCAGGTGATGCATTTGTGGGAG 958
Query 1045 GATTTATGTCACAGTTGGTGAAAGAGAAATCGATTGAGGAATGCGTGAAGGCTGGATGCT 1104
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 959 GATTCATGTCACAGTTGGTGAAAGAGAAATCGATTGAGGAATGCGTGAAAGCTGGATGCT 1018
Query 1105 ATGCGTCGAACGTGGTGATCCAAAGATCTGGCTGCACTTACCCTGAGAAGCCCGACTTTA 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 ATGCGTCGAACGTGGTGATCCAAAGATCTGGCTGCACTTACCCTGAGAAGCCCGACTTTA 1078
Query 1165 ACTAAACAATTGGGTTACCCTCAGTTTT 1192
||||||| ||||||| | |||||| |||
Sbjct 1079 ACTAAACTATTGGGTCATCCTCAGCTTT 1106
> Ahg478305 jgi|Araly1|478305|fgenesh2_kg.3__1006__AT3G09820.1
Length=1494
Score = 1219 bits (660), Expect = 0.0
Identities = 931/1061 (88%), Gaps = 21/1061 (2%)
Strand=Plus/Plus
Query 119 CAGATTCATCAT-CATGGCTTCTTCTTCTAACTACGATGGAATCCTTCTCGGTATGGGTA 177
|||| | ||||| ||||||||| | ||| | | |||||| |||||| | || ||||| |
Sbjct 130 CAGA-TAATCATCCATGGCTTC--C-TCTGATTTCGATGGTATCCTTTTGGGAATGGGCA 185
Query 178 ACCCACTCCTCGATATCTCTGCCGTCGTCGACGACGAATTTCTC-ACCAAATACGACATC 236
|||||||||| || ||||||||||||||||| | || |||||| | |||||||||||||
Sbjct 186 ACCCACTCCTGGACGTCTCTGCCGTCGTCGACCAAGAGTTTCTCGA-CAAATACGACATC 244
Query 237 AAGTTGAACAATGCGATTCTCGCGGAAGACAAACATTTGCCCATGTATGATGAGATGAG- 295
|| |||||||||||||||||||| || ||||||||||| |||||||| ||||| |||||
Sbjct 245 AAATTGAACAATGCGATTCTCGCAGAGGACAAACATTTACCCATGTACGATGAAATGAGC 304
Query 296 TAGCAAGTTCAATGTTGAATACATTGCCGGAGGTGCTACTCAGAACTCAATCAAAGTGGC 355
|| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 305 CAG-AAGTTCAATGTTGAATACATTGCTGGAGGTGCTACCCAGAACTCAATCAAAGTGGC 363
Query 356 TCAGTGGATGCTTCAAATTCCTGGGGCAACCAGTTACATGGGATCCATTGGAAAGGACAA 415
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 364 CCAGTGGATGCTTCAAATTCCTGGGGCAACCAGTTACATGGGATCAATTGGAAAGGACAA 423
Query 416 ATATGGAGAGGCCATGAAGAAGGATGCTACAGCAGCTGGTGTTAATGTTCACTATTATGA 475
||| |||||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 424 ATACGGAGAGGCAATGAAGAAGGATGCTACAGCAGCTGGTGTCAATGTCCACTATTACGA 483
Query 476 AGATGAGTCGGCACCTACTGGAACTTGTGGTGTCTGTGTTGTTGGTGGAGAAAGGTCTCT 535
||||||||| || |||| |||||||| |||||||||||| |||||||||||||||| ||
Sbjct 484 AGATGAGTCAACATCTACCGGAACTTGCGGTGTCTGTGTTCTTGGTGGAGAAAGGTCGCT 543
Query 536 TATTGCGAATCTTTCAGCTGCAAACTGCTACAAGGTTGATCACCTT-AAGAAGCCTGAAA 594
|||||||||||||| ||||| || |||||||||||||| || ||| |||||||| || |
Sbjct 544 CATTGCGAATCTTTCTGCTGCTAATTGCTACAAGGTTGAACA-CTTGAAGAAGCCAGAGA 602
Query 595 ACTGGGCAT-TGGTTGAGAAGGCCAAGTTCTACTACATTGCTGGATTCTTCCTCACAGTA 653
||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 ACTGGGC-TCTTGTTGAGAAGGCCAAGTTCTACTACATTGCTGGATTCTTCCTCACAGTA 661
Query 654 TCGCCTGAATCCATTCAGTTGGTATC-TGAGCACGCTGCTGCAAACAACAAGGTGTTCAC 712
|| || |||||||||||||||||| | ||| || || |||||||||||||||||||||||
Sbjct 662 TCACCAGAATCCATTCAGTTGGTA-CGTGAACATGCCGCTGCAAACAACAAGGTGTTCAC 720
Query 713 AATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAAGATGTGCAGGAGAAGTTCTT 772
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
Sbjct 721 GATGAACCTTTCTGCTCCATTCATCTGTGAATTCTTCAAAGATGTTCAGGAGAAGTGCAT 780
Query 773 GCCATACATGGACT-TCGTTTTCGGCAATGAGACAGAGGCAAGAACCTTCTCTAGGGTTC 831
|| |||||||||| | |||| ||||||||||| ||||||||||||||||| |||||||
Sbjct 781 ACCGTACATGGACTATATTTTT-GGCAATGAGACCGAGGCAAGAACCTTCTCCAGGGTTC 839
Query 832 ATGGCTGGGAGACTGAAGATGTCGAACAAATAGCCATCAAGATTTCACAGCTT-CCCAAG 890
| |||||||||||||| ||||| || ||||||||||||||||| || ||| || |||||
Sbjct 840 ACGGCTGGGAGACTGATGATGTTGAGCAAATAGCCATCAAGATGTCCCAG-TTGCCCAAA 898
Query 891 GCCACAGGAACATACAAGAGGACCACTGTGATTACACAGGGCGCTGATCCAGTGGTTGTT 950
||||| || || ||||||||||| |||||||||||||| ||||| || || ||||||||
Sbjct 899 GCCACTGGGACGTACAAGAGGACTACTGTGATTACACAAGGCGCAGACCCCGTGGTTGTC 958
Query 951 GCTGAAGATGGAAAGGTGAAGAAATATCCAGTCATCCCTCTCCCAAAGGAGAAGCTGGTT 1010
|| || |||||||| |||||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 959 GCCGAGGATGGAAAAGTGAAGAAGTACCCAGTCATCCCTCTCCCCAAGGAGAAGCTTGTT 1018
Query 1011 GACACCAACGGTGCAGGTGATGCATTTGTGGGAGGATTTATGTCACAGTTGGTGAAAGAG 1070
||||||||||||||||||||||| ||||| ||||| ||| | || ||| ||||| | | |
Sbjct 1019 GACACCAACGGTGCAGGTGATGCGTTTGTAGGAGGGTTTCTTTCGCAGCTGGTGCATG-G 1077
Query 1071 AAATCG-ATTGAGGAATGCGTGAAGGCTGGATGCTATGCGTCGAACGTGGTGATCCAAAG 1129
||| | ||||| || ||||||| ||| |||||||| || || ||||| |||||||| ||
Sbjct 1078 AAAGGGGATTGAAGAGTGCGTGAGGGCGGGATGCTACGCTTCAAACGTAGTGATCCAGAG 1137
Query 1130 ATCTGGCTGCACTTACCCTGAGAAGCCCGACTTTAACTAAA 1170
||||| ||||||||||||||||| || ||||| |||||||
Sbjct 1138 GTCTGGATGCACTTACCCTGAGAAACCAGACTTCAACTAAA 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50436619191
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5