BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03310.1

Length=483
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg939710 jgi|Araly1|939710|scaffold_600254.1                        516    6e-146


> Ahg939710 jgi|Araly1|939710|scaffold_600254.1
Length=374

 Score =  516 bits (279),  Expect = 6e-146
 Identities = 352/385 (91%), Gaps = 13/385 (3%)
 Strand=Plus/Plus

Query  41   ttctca-tctctctcATAAACATGATGAAGAAGAGCAAGCTGATCGCAAAGGCATGGAAG  99
            |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct  1    TTCTCATTCTCTCTCATAAACATGATGAAGAAGAGCAAGCTGATCACAAAGGCATGGAAG  60

Query  100  CAAATGTCAAGCAGAGTTGCCAAACACCGCGTCGCCACCGGAAATCCTAAGGATCAATAT  159
            |||||||||||||||||||||||||||| |||||   ||    |  |||| |||||||||
Sbjct  61   CAAATGTCAAGCAGAGTTGCCAAACACCACGTCG---CC----A--CTAATGATCAATAT  111

Query  160  CATATACCACATGACGTACCAAAGGGACACCTTGTGGTGTACGTTGGTAAAGATGAGGAA  219
            |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct  112  CATATACCACATGACGTACCAAAGGGGCACCTAGTGGTGTACGTTGGTAAAGAAGAGGAA  171

Query  220  ACTTATAAGAGGTTCGTTATAAAGATCACGTTGCTTCACGATCCCATCTTCAGAGCTTTG  279
            | ||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||
Sbjct  172  AGTTACAAGAGGTTCGTTATAAAGATCACGTTGCTTCACGATCCCCTCTTCAGGGCTTTG  231

Query  280  CTTGATCAATCAAAAGATGAAGCTTACGACGATTTCACTTCCGGAGATTCCAAGCTTTGT  339
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  232  CTTGATCAATCAAAAGATGAAGCTTATGACGATTTCACTTCCGGAGATTCCAAGCTTTGT  291

Query  340  ATTGCTTGTGACGAAACTCTCTTTCTCGAGGTCCTCCGTTGCGCTTCTCCTCGTTATTCG  399
            ||| | ||||| |||| |||||| || |||||| ||||||| ||||||||||||||||| 
Sbjct  292  ATTCCCTGTGAAGAAAGTCTCTTCCTTGAGGTCATCCGTTGTGCTTCTCCTCGTTATTC-  350

Query  400  TT-ATGAGTCTTTGATTCAAGAAGA  423
            || ||||||||||||| || |||||
Sbjct  351  TTGATGAGTCTTTGAT-CACGAAGA  374



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17513415351


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5