BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03320.1
Length=1716
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939712 jgi|Araly1|939712|scaffold_600256.1 2093 0.0
> Ahg939712 jgi|Araly1|939712|scaffold_600256.1
Length=1306
Score = 2093 bits (1133), Expect = 0.0
Identities = 1252/1310 (96%), Gaps = 6/1310 (0%)
Strand=Plus/Plus
Query 275 GGTGTTTTAA-CATCTTTACGAAGATGAAATGCTTCTTATTCCCTCTTGGGGACAAGAAA 333
|||||||||| | |||||| |||||||| |||||||||||| |||||||| |||||||||
Sbjct 1 GGTGTTTTAATC-TCTTTAAGAAGATGAGATGCTTCTTATTTCCTCTTGGAGACAAGAAA 59
Query 334 GATGAACAGAGAAGCCCTAAACCGGTTTCACCAACGTCTAACTTCAGTGACGTAAACAAA 393
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 60 GATGAACAGAGAAGCCCTAAACCGGTTTCACCGACGTCTAACTTCAGTGATGTAAACAAA 119
Query 394 AGCGGTTCAGATTTCAGTCCCCGGGATGTTTCTGGAACGAGCACAGTATCATCCACTGGT 453
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 AGCGGTTCAGATTTCAGTCCCCGGGATGTTTCTGGAACGAGCACGGTATCATCCACTGGT 179
Query 454 AGGAACTCGAACACTAGCATGTCAGCTAGAGAAAACAACCTTAGAGAGTTCACTATTGGT 513
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGGAACTCCAACACTAGCATGTCAGCTAGAGAAAACAACCTTAGAGAGTTCACTATTGGT 239
Query 514 GATCTTAAATCTGCCACAAGGAACTTCAGCAGGTCAGGTATGATCGGGGAAGGCGGTTTT 573
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 240 GATCTTAAATCTGCCACAAGGAACTTCAGCAGGTCTGGTATGATTGGGGAAGGCGGTTTT 299
Query 574 GGTTGTGTCTTCTGGGGAACAATCAAGAACTTAGAAGACCCATCGAAGAAAATCGAAGTC 633
|||||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 300 GGTTGTGTCTACTGGGGAACGATCAAGAACTTAGAAGACCCGTCGAAGAAAATCGAAGTC 359
Query 634 GCGGTTAAACAGCTCGGCAAAAGAGGGTTGCAGGGTCATAAAGAATGGGTGACTGAAGTG 693
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCGGTTAAACAGCTTGGCAAAAGAGGGTTGCAGGGTCATAAAGAATGGGTGACTGAAGTA 419
Query 694 AACTTTCTCGGTGTAGTCGAGCATTCAAACTTGGTGAAGTTGCTGGGACATTGTGCAGAA 753
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 420 AACTTTCTCGGTGTAGTCGAGCATTCAAACTTGGTGAAATTGTTGGGACATTGTGCAGAA 479
Query 754 GACGATGAACGTGGAATCCAAAGGCTTTTGGTTTATGAATATATGCCAAACCAAAGTGTC 813
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 480 GACGATGAACGTGGAATCCAAAGGCTTTTGGTTTATGAATATATGCCAAACCAAAGCGTC 539
Query 814 GAGTTCCATTTATCTCCGCGGTCACCGACAGTACTTACTTGGGACCTCAGATTGAGAATA 873
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 GAGTTCCATTTATCCCCGCGGTCACCGACAGTACTTACTTGGGACCTCAGATTGAGAATA 599
Query 874 GCACAAGACGCAGCTCGAGGTTTAACATACCTTCATGAAGAAATGGACTTTCAGATAATA 933
|| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCCCAAGACGCAGCTCGGGGTTTAACATACCTTCATGAAGAAATGGACTTTCAGATAATC 659
Query 934 TTCCGTGATTTCAAGTCATCCAACATTCTACTAGACGAGAATTGGACAGCGAAGCTTTCG 993
|||||||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||
Sbjct 660 TTCCGTGATTTCAAGTCATCCAACATTCTATTAGGCGAGAATTGGAAAGCGAAGCTTTCA 719
Query 994 GATTTCGGTTTGGCTCGCTTAGGTCCTTCACCAGGATCCAGCCATGTTTCTACTGATGTA 1053
||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 720 GATTTCGGTCTGGCTCGCTTAGGTCCTTCACCAGGATCAAGTCATGTTTCTACTGATGTA 779
Query 1054 GTAGGAACAATGGGATACGCAGCTCCAGAGTATATCCAAACGGGTCGCCTCACGTCGAAA 1113
|||||||||||||| |||||||||||||| || |||||||| ||||| ||||| ||||||
Sbjct 780 GTAGGAACAATGGGTTACGCAGCTCCAGAATACATCCAAACCGGTCGTCTCACATCGAAA 839
Query 1114 AGCGATGTGTGGGGATACGGAGTTTTCATCTATGAGCTCATTACAGGAAGAAGGCCACTA 1173
|||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 840 AGCGATGTGTGGGGTTACGGAGTTTTCATCTATGAGCTCATTACAGGAAGGAGACCACTA 899
Query 1174 GACCGGAACAAGCCTAAAGGAGAGCAGAAGCTTTTAGAATGGGTGAGACCTTACTTATCC 1233
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 900 GACCGAAACAAGCCTAAAGGAGAGCAGAAGCTTCTAGAATGGGTGAGACCTTACTTATCC 959
Query 1234 GACACAAGGAGGTTCCGGCTAATAGTAGACCCGAGGCTCGAGGGAAAGTACATGATCAAG 1293
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 960 GACACAAGGAGGTTCCGTCTCATAGTAGACCCGAGGCTCGAGGGGAAGTACATGATCAAG 1019
Query 1294 TCAGTGCAGAAACTCGCGGTTGTAGCCAACCTTTGCCTTACTAGAAACGCAAAGGCGCGT 1353
|||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1020 CCAGTGCAGAAACTCGCGGTTGTGGCCAACCTCTGCCTTACTAGGAACGCAAAGGCGCGT 1079
Query 1354 CCAAAGATGAGCGAGGTGTTAGAGATGGTGACAAAGATTGTGGAAGCTTCATCGCCTGGG 1413
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CCAAAGATGAGTGAGGTGTTAGAGATGGTGACAAAGATTGTGGAAGCTTCATCGCCTGGG 1139
Query 1414 AATGGTGGCAAGAAGCCGCAGCTGGTTCCACTAAAGAGTCAAGAAACTTCTAGAGTCGAG 1473
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct 1140 AATGGTGGCAAGAAACCGCAGCTGGTTCCGCTAAAGAGTCAAGAAGCTTCTAGAGTCGAG 1199
Query 1474 GAAGGGAAGAATAAGAAGGTTCTTGATGGTG-CTGAAGGAGGTTGGTTAGAAAAGTTGTG 1532
|||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||
Sbjct 1200 GAAGGGAAGAATAAGAAGGTGCTTGATGGTGGC-GAAGGAGGTTGGTTAGAAAAGTTGTG 1258
Query 1533 GAACCCAAAGAATGTGAGAGCTTGTTGATTCGGGGTCTACGTCAGAAACA 1582
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1259 GAACCCAAAGAATGTGAGAGCTTGTTGATTCGGG--CTACGTCAGAAACA 1306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64372514050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5