BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03330.1
Length=1537
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487104 jgi|Araly1|487104|fgenesh2_kg.6__238__AT5G03330.1 2183 0.0
Ahg937424 jgi|Araly1|937424|scaffold_501615.1 113 3e-24
Ahg937007 jgi|Araly1|937007|scaffold_501198.1 95.3 1e-18
Ahg482952 jgi|Araly1|482952|fgenesh2_kg.4__2012__AT2G39320.1 89.8 5e-17
> Ahg487104 jgi|Araly1|487104|fgenesh2_kg.6__238__AT5G03330.1
Length=1484
Score = 2183 bits (1182), Expect = 0.0
Identities = 1321/1384 (95%), Gaps = 26/1384 (2%)
Strand=Plus/Plus
Query 153 AATTTGAATTATGTTTATTTCCAACCTAAATTCTCAATCTTTCTTCCCAAAACTCTAAAA 212
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 122 AATTTGAATTATGTTTATTTCCAACCTAAATTCTCAATCTTTCATCCCAAAATTCTAAAA 181
Query 213 ATTGTCTATTTTTAGTAAAAATTCAATTCCGTCTTCAAGTTGCAGAGATTTTAGTAAGTG 272
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 182 GTTGTCTATTTTTAGTAAAAATTCAATTCCGTCTTCAAGTTGCAGAGA-TTTAGTAAGTG 240
Query 273 AAAGttttttttGTTGTTTGAAGATGGTGTCACATGAAGAGAACACAAGTATTGTGGAAT 332
|||| | ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGGTCAGTTTCTTTTTTGAAGATGGTGTCACATGAAGAGAACACAAGTATTGTGGAAT 300
Query 333 GGTTTCTTGGTCCACATCCATACACGTATCCGCCTTATGGTATTGAGATGATTCATGAGG 392
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 GGTTTCTTGGTCCACATCCATACACGTATCCTCCTTATGGTATTGAGATGATTCATGAGG 360
Query 393 ATGATGAAGTAGCAGTAGCtcatcatcatcatcatcaCCAGAGCGGTGAGTATTACAGAG 452
||||| | | ||||| | |||||||||||||||||| ||||||||||||||||
Sbjct 361 ATGAT---G-A--AGTAG-----C-TCATCATCATCACCAGAGTGGTGAGTATTACAGAG 408
Query 453 AGTATGAAGATCATCGTAGTAGCGATGTAGATAACGATGAGATCATTGCTAGAACTCTCC 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 AGTATGAAGATCATCGTAGTAGCGATGTAGATAACGATGAGATCATTGCTAGAACTCTCC 468
Query 513 AAGACGATTTTTTGCAGCTTGAAATCGCAGAAAGTAACGATTATTCGCATCAGAATcaac 572
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct 469 AAGACGATTTTTTGCAGCTTGAAATCGCAGAAAGTAACGATTTTTCGCATCAGAAT---C 525
Query 573 aacaacaacatcaacaagaaggttatactaacaactatagtaataacaacaaTGGTTATG 632
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 526 AACAACAACATCAACAAGAAGGTTATACTAATAACTATAGTAATAACAACAATGGATATG 585
Query 633 CTTGGAATGATCAGTCTCCTGCTGTGGATTATTCTTCAGAATGGATAGGAAATGATAATG 692
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 586 CTTGGAATGATCAG--T-CTGCTGTGGATTATTCTTCAGAATGGATAGGAAATGATAATG 642
Query 693 ATCAAGATGGGAGGAGCGATGATTCGGTTAATGTCTTTTCGTGTTCAAGCCCGAGTGACA 752
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 ATCAAGATGGGAGGAGTGATGATTCGGTTAATGTCTTTTCGTGTTCAAGCCCGAGTGACA 702
Query 753 CGGATGAGTATGTATACTCGTGGGAATCGGATCAGTGTGATGCTGATGGTGAATTTGGAA 812
||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||
Sbjct 703 CGGATGAGTATGTGTACTCGTGGGAGTCAGATCAATGTGATGCTGATGGTGAATTTGGAA 762
Query 813 GGAGATTGAATCAAATGGTTCCCATTCCGTATATACCGAAAATAAATGGAGAAATACCTC 872
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 763 GGAGATTGAATCAAATGATTCCCATTCCGTATATACCGAAAATAAACGGAGAAATACCTC 822
Query 873 CGGAAGAAGAAGCAGTTTCAGATCATGAAAGACTTCGGAATAGGTTAGAGATGTTTGACT 932
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 CGGAAGAAGAAGCAGTTTCAGATCATGAAAGACTTCGGAATAGGTTAGAGATGTTTGACT 882
Query 933 TCACTGAGGTTAAGGTTCCAGGAGATGGTAATTGCCAGTTCCGTGCTTTAGCTGATCAAC 992
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 883 TCACCGAGGTTAAGGTTCCGGGAGATGGTAATTGCCAGTTCCGTGCTTTAGCTGATCAAC 942
Query 993 TGTACAAAACCGCAGATCGCCATAAACATGTTCGACGACAAATAGTAAAACAGCTAAAAT 1052
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||
Sbjct 943 TGTACAAAACCGCAGATCGCCATAAACATGTTAGACGACAAATTGTAAAACAGCTCAAAT 1002
Query 1053 CTCGTCCAGATTCTTATCAAGGATACGTTCCTATGGACTTCTCTGATTATCTAAGAAAGA 1112
|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 1003 CTCGTCCAGATTCTTATCAAGGATACGTTCCTATGGACTTCTCTGAGTATCTAAAAAAGA 1062
Query 1113 TGTCTCGGAGCGGCGAATGGGGCGATCATGTGACATTACAGGCAGCTGCAGATGCGTATC 1172
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TGTCTCGGAGTGGCGAGTGGGGCGATCATGTGACATTACAGGCAGCTGCAGATGCGTATC 1122
Query 1173 GGGTGAAAATAGTAGTCCTAACATCGTTCAAAGATACATGTTACATTGAAATTCTTCCTA 1232
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1123 GGGTGAAAATAGTAGTCCTAACATCGTTCAAGGATACATGTTACATTGAAATCCTTCCTA 1182
Query 1233 CCTCCCAAGAATCCAAAGGAGTAATCTTCTTGAGCTTCTGGGCAGAGGTTCATTACAACG 1292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 CCTCCCAAGAATCCAAAGGAGTAATCTTCTTGAGCTTCTGGGCAGAGGTTCATTACAACG 1242
Query 1293 CCATCTACTTAAACAGAGATACATCTGAAACAGAGCTACAGAGGAAGAGAAAATGGTGGC 1352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 CCATCTACTTAAACAGAGATACATCTGAAACAGAGCTACAGAGGAAGAGAAAATGGTGGC 1302
Query 1353 GTTTCGGAAACTAGACAGACCATTGGATCATCATCACTGGGTTACATTAATATTTATTGA 1412
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 1303 GTTTCGGAAACTAGACAGGCCAT-GGATCATCATCACTGGGTTATATTAATATTTATTGA 1361
Query 1413 CTTG--AGAGAGA--TGTTCTTAGACATAGTCCCTTCGTagagagagagagGATGCTGAA 1468
|||| ||||||| ||||||| |||||||||||||||||||| | ||||||||| ||||
Sbjct 1362 CTTGTGAGAGAGAAATGTTCTTTGACATAGTCCCTTCGTAGAG-G-GAGAGGATGATGAA 1419
Query 1469 CAGAGCTCACAGCTTCAAAGCCTTACAATAATATTATTTTCTTCTTTGAAAGAAAGAAAA 1528
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1420 CAGAGCTCACAGCTTCAAAGTCTTACAATAATATTATTTTCTTCTTTGAAAGAAAGAAAA 1479
Query 1529 TTTT 1532
||||
Sbjct 1480 TTTT 1483
Score = 150 bits (81), Expect = 2e-35
Identities = 113/126 (90%), Gaps = 12/126 (10%)
Strand=Plus/Plus
Query 1 CTGGGTTTCTTTCTCGAATCGAAAAAGGGAAGAACAGCTTTATTTTTATTCGAATCATTC 60
|||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 1 CTGGGTTTCTTTCTCGAATCGAAAAAGGGAAG-A-A-CTTTATTTTTATTCGAATCATTC 57
Query 61 TCGATCCttttt-tt--t-t-C---ATCATCAGCCaaaaaaattcagtctttttcagaag 112
|||||||||||| || | | | ||||||||||||||||||| ||||||||| |||||
Sbjct 58 TCGATCCTTTTTCTTCATCTTCTTCATCATCAGCCAAAAAAATTGAGTCTTTTT-AGAAG 116
Query 113 aagaaa 118
||||||
Sbjct 117 AAGAAA 122
> Ahg937424 jgi|Araly1|937424|scaffold_501615.1
Length=520
Score = 113 bits (61), Expect = 3e-24
Identities = 193/254 (76%), Gaps = 19/254 (7%)
Strand=Plus/Plus
Query 962 AATTGCCAGTTCCGTGCTTTAGCTGATCAACTGTA-CAAAACCGCAGATCGCCATAAACA 1020
|||||||||||||||||||||||||||||| | || |||| || | ||| | |||||||
Sbjct 139 AATTGCCAGTTCCGTGCTTTAGCTGATCAATTTTATCAAA-CCTCGGATTGTCATAAACG 197
Query 1021 TGTTCGACGACAAATAGTAAAACAGCTAAAATCTCGTCCA--GATTCTTATCAA-GGATA 1077
|||| ||| | |||| ||||||||||| ||||||| |||| |||| | | ||| || |
Sbjct 198 TGTTAGACAAGAAATCGTAAAACAGCTTAAATCTCATCCAAAGATT-T-A-CAAAGGGTT 254
Query 1078 CGT---TCCTATGGACTTCTCTGATTATCTAA-GAAAGATGTCT-CGGAGCGGCGAATGG 1132
|| | |||||||||||| | ||| ||| ||| ||||| | | | |||||||
Sbjct 255 TGTGAATAATATGGACTTCTCCCAGTATGTAAAGAAT-ATGTCCACTAA-CTCCGAATGG 312
Query 1133 GGCGATCATGTGACATT-ACAGGCAGCTGCAGATGCGTATCGG-GTGAAAATAGTAGTCC 1190
|||||| | || ||||| | || | | ||| |||| |||| || || ||||||||| ||
Sbjct 313 GGCGATGAAGTCACATTGAGAGTC-GTTGCTGATGTGTAT-GGAGTCAAAATAGTACTCA 370
Query 1191 TAACATCGTTCAAA 1204
| ||||| |||||
Sbjct 371 TTACATCAATCAAA 384
> Ahg937007 jgi|Araly1|937007|scaffold_501198.1
Length=379
Score = 95.3 bits (51), Expect = 1e-18
Identities = 78/91 (86%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 956 GATGGTAATTGCCAGTTCCGTGCTTTAGCTGATCAACTGTACAAAACCGCAGATCGCCAT 1015
||||| |||||||||||||||||||||||||||||||| ||||||||| | ||| | |||
Sbjct 228 GATGGAAATTGCCAGTTCCGTGCTTTAGCTGATCAACTCTACAAAACCTCGGATTGTCAT 287
Query 1016 AAACATGTTCGACGACAAAT-AGTAAAACAG 1045
|||| |||| ||| | |||| | || |||||
Sbjct 288 AAACGTGTTAGACAAGAAATCA-TACAACAG 317
> Ahg482952 jgi|Araly1|482952|fgenesh2_kg.4__2012__AT2G39320.1
Length=615
Score = 89.8 bits (48), Expect = 5e-17
Identities = 77/91 (85%), Gaps = 2/91 (2%)
Strand=Plus/Plus
Query 956 GATGGTAATTGCCAGTTCCGTGCTTTAGCTGATCAACTGTA-CAAAACCGCAGATCGCCA 1014
||||| |||||||||||||||||||||||||||||||| || |||| || | ||| | ||
Sbjct 40 GATGGAAATTGCCAGTTCCGTGCTTTAGCTGATCAACTTTATCAAA-CCTCGGATAGTCA 98
Query 1015 TAAACATGTTCGACGACAAATAGTAAAACAG 1045
||||| |||| ||| | |||| ||||| |||
Sbjct 99 TAAACGTGTTAGACAAGAAATCGTAAATCAG 129
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57554360195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5