BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03340.1
Length=2671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939714 jgi|Araly1|939714|scaffold_600258.1 4135 0.0
Ahg478309 jgi|Araly1|478309|fgenesh2_kg.3__1010__AT3G09840.1 2684 0.0
> Ahg939714 jgi|Araly1|939714|scaffold_600258.1
Length=2473
Score = 4135 bits (2239), Expect = 0.0
Identities = 2384/2456 (97%), Gaps = 2/2456 (0%)
Strand=Plus/Plus
Query 86 AGCTATCATTATGTCAAACGAACCGGAATCCTCCGACTCGAAAACTAAGAAGGATTTCAG 145
|||||||| |||||||||| |||| ||||| |||||||||||| ||||||||||||||||
Sbjct 11 AGCTATCACTATGTCAAACCAACCTGAATCTTCCGACTCGAAACCTAAGAAGGATTTCAG 70
Query 146 TACTGCGATTCTAGAGAGGAAGAAGTCTCCAAACCGACTTGTTGTCGATGAAGCTATTAA 205
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 71 TACTGCGATTCTCGAGAGGAAGAAGTCTCCAAACCGACTTGTTGTCGATGAAGCCATTAA 130
Query 206 CGATGACAACTCTGTTGTCTCTCTCCATCCTACTACCATGGAAAAACTCCAGCTTTTCCG 265
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 131 CGATGACAACTCTGTTGTCTCTCTCCATCCTGCTACCATGGAAAAGCTCCAGCTTTTCCG 190
Query 266 AGGCGATACAATTCTCATCAAGGGTAAGAAGAGGAAGGACACTGTATGCATTGCCCTCGC 325
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 191 AGGCGATACAATTCTCATCAAGGGTAAGAAGAGAAAGGACACTGTGTGCATTGCCCTTGC 250
Query 326 TGATGAAACATGTGAGGAACCCAAGATCAGAATGAATAAGGTTGTAAGGTCTAACTTGAG 385
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 251 TGATGAAACATGTGAGGAACCCAGGATCAGAATGAATAAGGTTGTAAGGTCTAACTTGAG 310
Query 386 GGTTAGGCTGGGAGATGTTATTTCTGTTCACCAATGCCCAGATGTCAAGTATGGAAAGCG 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GGTTAGGCTGGGAGATGTTATTTCTGTTCACCAATGCCCAGATGTCAAGTATGGAAAGCG 370
Query 446 TGTTCACATCTTGCCTGTTGATGATACAGTTGAAGGCGTTACTGGAAACCTCTTTGATGC 505
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 371 TGTGCACATCTTGCCAGTTGATGATACAGTTGAAGGCGTTACTGGAAACCTTTTTGATGC 430
Query 506 TTACCTGAAACCTTACTTTCTGGAGGCGTACCGTCCAGTGAGGAAGGGAGATCTTTTCCT 565
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 431 TTACCTTAAACCTTACTTCCTGGAGGCGTACCGCCCAGTGAGGAAGGGAGATCTTTTCCT 490
Query 566 AGTGAGAGGAGGAATGAGGAGTGTGGAGTTCAAAGTGATCGAGACTGATCCTGCTGAGTA 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 AGTGAGAGGAGGAATGAGGAGTGTGGAGTTCAAAGTGATCGAGACTGATCCTGCTGAGTA 550
Query 626 CTGTGTGGTGGCTCCAGATACAGAGATTTTCTGTGAGGGTGAACCAGTTAAGAGGGAGGA 685
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 551 CTGTGTGGTGGCTCCAGATACAGAGATTTTCTGTGAGGGTGAACCAGTCAAGAGGGAAGA 610
Query 686 CGAAGAAAGGCTTGATGAGGTTGGTTATGACGATGTTGGTGGTGTCAGGAAACAGATGGC 745
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 611 CGAAGAAAGGCTTGATGAGGTCGGTTATGACGATGTTGGTGGTGTCAGGAAACAGATGGC 670
Query 746 TCAGATTAGGGAATTGGTTGAACTTCCCTTGAGGCATCCACAACTCTTTAAATCAATTGG 805
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TCAGATTAGGGAATTGGTTGAACTTCCCTTGAGGCATCCACAACTCTTTAAATCAATTGG 730
Query 806 TGTGAAGCCACCAAAGGGAATTCTGCTTTACGGACCTCCTGGATCCGGGAAGACTCTTAT 865
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 731 TGTGAAGCCACCAAAGGGAATTCTGCTTTATGGACCTCCTGGATCCGGGAAGACTCTTAT 790
Query 866 TGCTCGTGCTGTGGCTAATGAAACCGGAGCATTCTTCTTCTGTATCAATGGACCGGAAAT 925
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 791 TGCTCGTGCTGTGGCTAATGAAACCGGGGCATTTTTCTTCTGTATCAATGGACCGGAAAT 850
Query 926 CATGTCGAAACTAGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGA 985
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 851 CATGTCCAAACTGGCTGGTGAGAGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGA 910
Query 986 GAAGAATGCCCCGTCTATCATATTCATTGATGAGATTGACTCTATTGCACCAAAAAGAGA 1045
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 GAAGAATGCCCCTTCTATCATATTCATTGATGAGATTGACTCTATTGCACCAAAAAGAGA 970
Query 1046 GAAGACGAATGGTGAGGTTGAGAGGAGGATTGTCTCTCAGCTCCTTACGCTTATGGATGG 1105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 971 GAAGACGAATGGTGAGGTTGAGAGGAGGATTGTCTCTCAGCTCCTTACGCTTATGGATGG 1030
Query 1106 ACTAAAATCACGTGCCCATGTTATTGTTATGGGAGCAACAAATCGTCCCAACAGTATTGA 1165
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1031 ACTAAAATCACGTGCCCATGTTATTGTTATGGGAGCAACAAATCGCCCCAACAGTATTGA 1090
Query 1166 TCCGGCTTTGAGAAGGTTTGGAAGATTCGACAGGGAAATTGATATCGGTGTTCCTGATGA 1225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 TCCGGCTTTGAGAAGGTTTGGAAGATTCGACAGGGAAATTGATATCGGTGTTCCTGATGA 1150
Query 1226 AATTGGACGTCTTGAAGTTCTTAGGATCCACACGAAGAACATGAAGCTAGCTGAAGATGT 1285
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1151 AATTGGACGTCTTGAAGTTCTTAGGATCCACACAAAGAACATGAAGCTAGCTGAAGATGT 1210
Query 1286 TGATCTAGAAAGAATCTCCAAGGACACGCATGGATATGTTGGAGCTGATCTTGCAGCTCT 1345
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1211 GGATCTAGAAAGAATCTCCAAGGACACGCATGGATATGTTGGAGCTGATCTTGCAGCTCT 1270
Query 1346 ATGCACTGAAGCTGCCCTTCAATGTATCAGAGAGAAGATGGATGTGATTGACTTGGAAGA 1405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1271 ATGCACTGAAGCTGCCCTTCAATGTATCAGAGAGAAGATGGATGTGATTGACTTGGAAGA 1330
Query 1406 TGACTCAATTGACGCCGAAATCCTCAATTCCATGGCTGTGTCTAATGAACACTTCCACAC 1465
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1331 TGACTCAATTGACGCCGAAATCCTCAATTCCATGGCGGTGTCTAATGAACACTTCCACAC 1390
Query 1466 TGCTCTTGGAAACAGCAACCCATCCGCCCTTCGTGAAACTGTTGTGGAGGTTCCAAATGT 1525
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1391 CGCTCTTGGAAACAGCAACCCATCCGCACTTCGTGAAACTGTTGTGGAGGTTCCAAATGT 1450
Query 1526 CTCCTGGGAGGATATTGGAGGTCTCGAGAATGTTAAGAGAGAGCTTCAGGAGACTGTTCA 1585
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1451 CTCCTGGGAGGATATTGGAGGTCTTGAGAATGTTAAGAGAGAGCTTCAGGAGACTGTTCA 1510
Query 1586 ATACCCTGTGGAGCATCCAGAGAAATTCGAGAAGTTTGGTATGTCTCCATCAAAGGGAGT 1645
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1511 ATACCCTGTTGAGCATCCAGAGAAATTCGAAAAGTTTGGTATGTCTCCATCAAAGGGAGT 1570
Query 1646 TCTTTTCTACGGTCCTCCTGGATGTGGTAAAACCCTGTTAGCCAAAGCTATAGCAAACGA 1705
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1571 TCTTTTCTACGGTCCTCCTGGATGTGGGAAAACCCTTTTAGCCAAAGCTATAGCAAACGA 1630
Query 1706 GTGCCAAGCAAACTTCATCAGTGTCAAGGGACCCGAGCTTCTCACAATGTGGTTTGGAGA 1765
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1631 GTGCCAAGCAAACTTCATCAGTGTCAAAGGACCTGAGCTTCTCACAATGTGGTTTGGAGA 1690
Query 1766 AAGTGAAGCCAACGTCCGAGAAATCTTTGACAAGGCTCGTCAATCTGCTCCTTGTGTTCT 1825
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1691 AAGTGAAGCCAACGTCCGTGAAATCTTTGACAAGGCTCGTCAATCTGCTCCTTGTGTTCT 1750
Query 1826 GTTTTTCGATGAGCTAGACTCCATTGCTACTCAGAGAGGGAACAGCGCGGGTGATGCCGG 1885
||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 1751 GTTTTTCGATGAGCTCGACTCCATTGCTACTCAGAGAGGAAACAGCGTGGGTGATGCCGG 1810
Query 1886 CGGTGCAGCTGACAGAGTGTTGAATCAGCTTTTGACAGAAATGGATGGAATGAATGCAAA 1945
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1811 CGGTGCAGCTGATAGAGTGTTGAATCAGCTTCTGACAGAAATGGATGGAATGAATGCAAA 1870
Query 1946 GAAGACGGTATTCATTATTGGAGCAACTAACAGACCGGATATCATAGATTCAGCTCTTCT 2005
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1871 GAAGACGGTATTCATTATTGGAGCAACTAACAGGCCGGATATCATAGATCCAGCTCTTCT 1930
Query 2006 TCGACCTGGAAGACTCGACCAGCTTATCTACATTCCTCTACCTGATGAAGATTCCCGTCT 2065
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1931 TCGACCTGGAAGACTCGACCAGCTTATCTATATTCCTCTACCTGATGAAGATTCCCGTCT 1990
Query 2066 CAATATCTTTAAGGCCTGCTTGAGAAAATCTCCCGTCGCTAAAGATGTAGATGTTACTGC 2125
||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1991 CAATATCTTCAAGGCCTGCTTGAGAAAATCTCCTGTCGCTAAAGATGTAGATGTGACTGC 2050
Query 2126 ACTCGCAAAGTACACTCAGGGATTCAGTGGTGCTGATATCACCGAGATCTGCCAGAGAGC 2185
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2051 ACTCGCTAAGTACACTCAGGGATTCAGTGGTGCTGATATCACTGAGATCTGCCAGAGAGC 2110
Query 2186 TTGCAAGTACGCCATCAGAGAAAACATCGAAAAGGATATTGAGAACGAGCGTAGAAGGAG 2245
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 2111 TTGCAAGTACGCCATCAGAGAAAATATCGAAAAGGATATTGAGAAAGAGCGTAGAAGGAG 2170
Query 2246 CCAGAATCCAGAGGCCATGGAGGAAGATATGGTGGATGATGAAGTTTCAGAGATTAGAGC 2305
| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2171 CGAGAATCCAGAGGCGATGGAGGAAGATATGGTGGATGATGAAGTTTCAGAGATTCGAGC 2230
Query 2306 TGCTCATTTCGAAGAGTCGATGAAATATGCAAGGAGAAGTGTGAGTGATGCTGATATTCG 2365
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2231 TGCTCATTTCGAAGAGTCGATGAAATATGCAAGGAGAAGTGTAAGTGATGCTGATATTCG 2290
Query 2366 CAAGTACCAAGCTTTTGCTCAGACGCTGCAGCAATCCAGAGGGTTTGGATCTGAGTTCAG 2425
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 2291 CAAGTACCAAGCTTTTGCTCAGACACTGCAGCAATCGAGAGGGTTTGGATCTGAGTTCAG 2350
Query 2426 GTTTGACTCAACCGCTGGTGTCGG-ACGCACCACTGGTGTTGCAGCCGCCGATCCCTTTG 2484
|||||||||||||||| || ||| |||||||| ||||| |||| |||| ||||||||||
Sbjct 2351 GTTTGACTCAACCGCTTCTG-CGGGACGCACCATTGGTGGTGCACCCGCTGATCCCTTTG 2409
Query 2485 CCACTTCTGCAGCTGCAGCTGATGACGACGATCTCTACAGTTAGATTTTGATTTCT 2540
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2410 CCACTTCTGCAGCTGCAGCTGATGACGACGATCTCTACAGTTAGATTATGATTTCT 2465
> Ahg478309 jgi|Araly1|478309|fgenesh2_kg.3__1010__AT3G09840.1
Length=2732
Score = 2684 bits (1453), Expect = 0.0
Identities = 2118/2439 (87%), Gaps = 45/2439 (2%)
Strand=Plus/Plus
Query 111 GAATCCTCCGACTCGAAAACTAAGAAGGATTTCAGTACTGCGATTCTAGAGAGGAAGAAG 170
||||| || ||||||||| | ||||| |||||||||||||| ||||| ||||||||||||
Sbjct 141 GAATCTTCAGACTCGAAATCGAAGAAAGATTTCAGTACTGCTATTCTCGAGAGGAAGAAG 200
Query 171 TCTCCAAACCGACTTGTTGTCGATGAAGCTATTAACGATGACAACTCTGTTGTCTCTCTC 230
||||| ||||| ||||| |||||||| || || |||||||| ||||| || ||||||||
Sbjct 201 TCTCCGAACCGTCTTGTCGTCGATGAGGCAATCAACGATGATAACTCCGTCGTCTCTCTT 260
Query 231 CATCCTACTACCATGGAAAAACTCCAGCTTTTCCGAGGCGATACAATTCTCATCAAGGGT 290
|| ||| | |||||||| || || ||||| ||||| || ||||| |||||||||||||||
Sbjct 261 CACCCTGCAACCATGGAGAAGCTTCAGCTCTTCCGTGGTGATACCATTCTCATCAAGGGT 320
Query 291 AAGAAGAGGAAGGACACTGTATGCATTGCCCTCGCTGATGAAACATGTGAGGAACCCAAG 350
||||| |||||||||||||| |||||||| ||||| ||||| |||||||||| || |||
Sbjct 321 AAGAAAAGGAAGGACACTGTCTGCATTGCTCTCGCCGATGAGTCATGTGAGGAGCCAAAG 380
Query 351 ATCAGAATGAATAAGGTTGTAAGGTCTAACTTGAGGGTTAGGCTGGGAGATGTTATTTCT 410
||||||||||| || || || || ||||||||||||||||| ||||||||||||||||||
Sbjct 381 ATCAGAATGAACAAAGTAGTCAGATCTAACTTGAGGGTTAGACTGGGAGATGTTATTTCT 440
Query 411 GTTCACCAATGCCCAGATGTCAAGTATGGAAAGCGTGTTCACATCTTGCCTGTTGATGAT 470
||||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 441 GTTCACCAATGCCCAGACGTCAAGTACGGAAAGCGTGTGCACATCTTGCCTGTTGATGAT 500
Query 471 ACAGTTGAAGGCGTTACTGGAAACCTCTTTGATGCTTACCTGAAACCTTACTTT-CTGGA 529
|| |||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct 501 ACTGTTGAAGGAGTGACTGGAAACCTCTTTGATGCTTACCTGAAACCTTA-TTTCCTGGA 559
Query 530 GGCGTACCGTCCAGTGAGGAAGGGAGATCTTTTCCTAGTGAGAGGAGGAATGAGGAGTGT 589
||| |||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||
Sbjct 560 GGCATACCGTCCAGTGAGGAAGGGTGATCTCTTCCTAGTCAGAGGAGGCATGAGGAGTGT 619
Query 590 GGAGTTCAAAGTGATCGAGACTGATCCTGCTGAGTACTGTGTGGTGGCTCCAGATACAGA 649
|||||||||||| || ||||| ||||||||||||||||| ||||| |||||||| |||||
Sbjct 620 GGAGTTCAAAGTCATAGAGACAGATCCTGCTGAGTACTGCGTGGTTGCTCCAGACACAGA 679
Query 650 GATTTTCTGTGAGGGTGAACCAGTTAAGAGGGAGGACGAAGAAAGGCTTGATGAGGTTGG 709
|||||||||||||||||| || || ||||| ||||| ||||||||||| ||||| || ||
Sbjct 680 GATTTTCTGTGAGGGTGAGCCTGTGAAGAGAGAGGATGAAGAAAGGCTAGATGATGTAGG 739
Query 710 TTATGACGATGTTGGTGGTGTCAGGAAACAGATGGCTCAGATTAGGGAA-TTGGTTGAAC 768
|||||| |||||||| |||||||||||||||||||||||||| || ||| || |||||||
Sbjct 740 TTATGATGATGTTGGCGGTGTCAGGAAACAGATGGCTCAGATCAGAGAACTT-GTTGAAC 798
Query 769 TTCCCTTGAGGCATCCACAACTCTTTAAATCAATTGGTGTGAAGCCACCAAAGGGAATTC 828
||||||||||||||||||| || || || ||||||||||| |||||||||||||||||||
Sbjct 799 TTCCCTTGAGGCATCCACAGCTATTCAAGTCAATTGGTGTTAAGCCACCAAAGGGAATTC 858
Query 829 TGCTTTACGGACCTCCTGGATCCGGGAAGACTCTT-ATTGCTCGTGCTGTGGCTAATGAA 887
| ||||| ||||| ||||| ||||| |||||| || ||||||||||||||||||||||||
Sbjct 859 TTCTTTATGGACCACCTGGGTCCGGAAAGACT-TTGATTGCTCGTGCTGTGGCTAATGAA 917
Query 888 ACCGGAGCATTCTTCTTCTGTATCAATGGACCGGAAATCATGTCGAAACTAGCTGGTGAG 947
|| || || || |||||||||||||| ||||| || |||||||| ||||| |||||||||
Sbjct 918 ACTGGTGCCTTTTTCTTCTGTATCAACGGACCTGAGATCATGTCCAAACTGGCTGGTGAG 977
Query 948 AGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGAGAAGAATGCCCCGTCTATCATA 1007
||||||||||||||||||||||||||||||||||||||||| |||||||| || ||||||
Sbjct 978 AGTGAGAGCAACCTCAGGAAAGCATTTGAGGAGGCTGAGAAAAATGCCCCTTCAATCATA 1037
Query 1008 TTCATTGATGAGATTGACTCTATTGCACCAAAAAGAGAGAAGACGAATGGTGAGGTTGAG 1067
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 1038 TTCATTGATGAGATTGACTCTATTGCACCCAAAAGAGAGAAGACGAATGGCGAGGTTGAG 1097
Query 1068 AGGAGGATTGTCTCTCAGCTCCTTACGCTTATGGATGGACTAAAATCACGTGCCCATGTT 1127
||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||
Sbjct 1098 AGGAGGATTGTGTCTCAGCTGCTTACGCTTATGGATGGACTGAAATCGCGTGCTCATGTT 1157
Query 1128 ATTGTTATGGGAGCAACAAATCGTCCCAACAGTATTGATCCGGCTTTGAGAAGGTTTGGA 1187
||||| ||||||||||| ||||| ||||||||||| || || ||||||||||||||||||
Sbjct 1158 ATTGTCATGGGAGCAACCAATCGCCCCAACAGTATCGACCCAGCTTTGAGAAGGTTTGGA 1217
Query 1188 AGATTCGACAGGGAAATTGATATCGGTGTTCCTGATGAAATTGGACGTCTTGAAGTTCTT 1247
||||| |||||||| || ||||| || |||||||| |||||||||||||||||||||||
Sbjct 1218 AGATTTGACAGGGAGATCGATATTGGGGTTCCTGACGAAATTGGACGTCTTGAAGTTCTG 1277
Query 1248 AGGATCCACACGAAGAACATGAAGCTAGCTGAAGATGTTGATCTAGAAAGAATCTCCAAG 1307
|||||||| || |||||||||||||| ||||||||||| ||||| ||||| ||||| |||
Sbjct 1278 AGGATCCATACAAAGAACATGAAGCTTGCTGAAGATGTGGATCTCGAAAGGATCTCAAAG 1337
Query 1308 GACACGCATGGATATGTTGGAGCTGATCTTGCAGCTCTATGCACTGAAGCTGCCCTTCAA 1367
|| || || || || || || ||||||||||||||| | ||||| || || ||||| |||
Sbjct 1338 GATACACACGGTTACGTCGGCGCTGATCTTGCAGCTTTGTGCACAGAGGCCGCCCTGCAA 1397
Query 1368 TGTATCAGAGAGAAGATGGATGTGATTGACTTGGAAGATGACTCAATTGACGCCGAAATC 1427
|| ||||| |||||||||||||||||||| |||||||||||||| || || || ||||||
Sbjct 1398 TGCATCAGGGAGAAGATGGATGTGATTGATTTGGAAGATGACTCCATAGATGCTGAAATC 1457
Query 1428 CTCAATTCCATGGCTGTGTCTAATGAACACTTCCACACTGCTCTTGGAAACAGCAACCCA 1487
|||||||||||||| ||| |||||||||| |||||||||||||| || ||||||||||||
Sbjct 1458 CTCAATTCCATGGCAGTGACTAATGAACATTTCCACACTGCTCTCGGGAACAGCAACCCA 1517
Query 1488 TCCGCCCTTCGTGAAACTGTTGTGGAGGTTCCAAATGTCTCCTGGGAGGATATTGGAGGT 1547
|| || |||||||||||||||||||| ||||| || ||||| ||| | ||||||||||||
Sbjct 1518 TCTGCACTTCGTGAAACTGTTGTGGAAGTTCCCAACGTCTCTTGGAATGATATTGGAGGT 1577
Query 1548 CTCGAGAATGTTAAGAGAGAGCTTCAGGAGACTGTTCAATACCCTGTGGAGCATCCAGAG 1607
|| |||||||| |||||||||||||||||||||||||||||||| || || || ||||||
Sbjct 1578 CTTGAGAATGTCAAGAGAGAGCTTCAGGAGACTGTTCAATACCCAGTCGAACACCCAGAG 1637
Query 1608 AAATTCGAGAAGTTTGGTATGTCTCCATCAAAGGGAGTTCTTTTCTACGGTCCTCCTGGA 1667
|| || ||||| || || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1638 AAGTTTGAGAAATTCGGGATGTCTCCATCAAAGGGAGTACTTTTCTACGGTCCTCCTGGA 1697
Query 1668 TGTGGTAAAACCCTGTTAGCCAAAGCTATAGCAAACGAGTGCCAAGCAAACTTCATCAGT 1727
||||| ||||| || || ||||||||||| || |||||||||||||| || |||||||||
Sbjct 1698 TGTGGGAAAACTCTTTTGGCCAAAGCTATTGCCAACGAGTGCCAAGCTAATTTCATCAGT 1757
Query 1728 GTCAAGGGACCCGAGCTTCTCACAATGTGGTTTGGAGAAAGTGAAGCCAACGTCCGAGAA 1787
|||||||| ||||||||||| || |||||||||||||| |||||||| || ||||| |||
Sbjct 1758 GTCAAGGGTCCCGAGCTTCTGACGATGTGGTTTGGAGAGAGTGAAGCGAATGTCCGTGAA 1817
Query 1788 ATCTTTGACAAGGCTCGTCAATCTGCTCCTTGTGTTCTGTTT-TTCGATGAGCTAGACTC 1846
||||| |||||||| |||||||| ||||| |||||||| ||| ||||||||||| |||||
Sbjct 1818 ATCTTCGACAAGGCCCGTCAATCCGCTCCATGTGTTCT-TTTCTTCGATGAGCTTGACTC 1876
Query 1847 CATTGCTACTCAGAGAGG-GAACAGC-GCGG-GT-GATGCCGGCGGTGCAGCTGACAGAG 1902
|||||| ||||||||||| | | | | || | |||| ||||| || || || ||||
Sbjct 1877 CATTGCGACTCAGAGAGGAGG-CGGAAGTGGAGGCGATGGAGGCGGCGCTGCGGATAGAG 1935
Query 1903 TGTTGAATCAGCTTTTGACAGAAATGGATGGAATGAATGCAAAGAAGACGGTATTCATTA 1962
||||||| ||||||||||| || |||||||||||||| || ||||| || || ||||| |
Sbjct 1936 TGTTGAACCAGCTTTTGACTGAGATGGATGGAATGAACGCCAAGAAAACTGTCTTCATCA 1995
Query 1963 TTGGAGCAACTAACAGACCGGATATCATAGATTCAGCTCTTCTTCGACCTGGAAGACTCG 2022
|||||||||| |||||||| || || || ||||| |||||||| || |||||||| || |
Sbjct 1996 TTGGAGCAACCAACAGACCTGACATTATCGATTCGGCTCTTCTCCGTCCTGGAAGGCTTG 2055
Query 2023 ACCAGCTTATCTACATTCCTCTACCTGATGAAGATTCCCGTCTCAATATCTTTAAGGCCT 2082
||||||| || |||||||| ||||| || || |||||||||||||||||||| ||||||
Sbjct 2056 ACCAGCTCATTTACATTCCACTACCAGACGAGGATTCCCGTCTCAATATCTTCAAGGCC- 2114
Query 2083 GC-TTGAGAAAATCTCCCGTCGCTAAAGATGTAGATGTTACTGCACTCGC-AAAGTACAC 2140
|| ||||| |||||||| | ||||||||||| || | |||||||||| ||| |||||
Sbjct 2115 GCCTTGAGGAAATCTCCTATTGCTAAAGATGTTGACATCGCTGCACTCGCTAAA-TACAC 2173
Query 2141 TCAGGGATTCAGTGGTGCTGATATCACCGAGATCTGCCAGAGAGCTTGCAAGTACGCCAT 2200
||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||
Sbjct 2174 TCAGGGATTCAGTGGTGCTGATATCACTGAGATTTGTCAGAGAGCTTGCAAGTACGCCAT 2233
Query 2201 CAGAGAAAACATCGAAAAGGATATTGAGAACGAGC-GTAGAAGGAGCCAGAATCCAGAGG 2259
|||||||||||| || ||||| ||||| || ||| | || |||||| |||| |||||||
Sbjct 2234 CAGAGAAAACATTGAGAAGGACATTGAAAAGGAGAAG-AGGAGGAGCGAGAACCCAGAGG 2292
Query 2260 CCATGGAGGAAGATATG-GTGGATGATGAAGTTTCAGAGATTAGAGCTGCTCA-TTTCGA 2317
| |||||||||||| | |||||||| | || |||||||| | |||||| || ||| ||
Sbjct 2293 CAATGGAGGAAGATG-GAGTGGATGA--A-GTATCAGAGATCAAAGCTGCACACTTT-GA 2347
Query 2318 AGAGTCGATGAAATATGCAAGGAGAAGTGTGAGTGATGCTGATATTC-GCAAGTACCAAG 2376
||||||||||| |||||| | || |||||||||||||| || || | | ||||||||||
Sbjct 2348 GGAGTCGATGAAGTATGCACGTAGGAGTGTGAGTGATGCAGACAT-CAGGAAGTACCAAG 2406
Query 2377 CTTTTGCTCAGACGCTGCAGCAATCCAGAGGGTTTGGATCTGAGTTCAGGTTTGACTCAA 2436
|||||||||||||| ||||||| || |||||||| || ||||| |||||||| || ||
Sbjct 2407 CTTTTGCTCAGACGTTGCAGCAGTCTAGAGGGTTCGGTTCTGAATTCAGGTTCGAG--AA 2464
Query 2437 C-C-GCTGGTGTC-GGACGC-ACCACTGGTGTTGCAGCCGCCGATCCCTTTGCCACTTCT 2492
| |||||| || || || |||||||| ||||||| |||| |||||||| |||
Sbjct 2465 TTCTGCTGGT-TCAGGT-GCCACCACTGGAGTTGCAG------ATCCGTTTGCCACGTCT 2516
Query 2493 GCAGCTGCAGCTGATGACGACGAT---CTCTACAGTTAG 2528
||||| || |||| ||||| ||| ||||||| ||||
Sbjct 2517 GCAGCCGCTGCTGGGGACGATGATGATCTCTACAATTAG 2555
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100748698025
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5