BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03345.1
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487108 jgi|Araly1|487108|fgenesh2_kg.6__242__AT5G03345.1 791 0.0
> Ahg487108 jgi|Araly1|487108|fgenesh2_kg.6__242__AT5G03345.1
Length=561
Score = 791 bits (428), Expect = 0.0
Identities = 522/567 (92%), Gaps = 7/567 (1%)
Strand=Plus/Plus
Query 1 ACTGATCGTCTTCTATTCTAGTTCGATTCTCGACGGAGAATACTCGACGAGAAAATCCAG 60
|||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 1 ACTGATCGTCTTCTATTCTAGTTCGATTCTCGGCGGAGAGTACTGGACGAGAAAATCCAG 60
Query 61 ATCGGGAATCAACTTAGAGAAGAAGAAAATTAAAAAAGAGAACTTCTAAAGATGAATTTG 120
||||||||||||||| | | ||||||||| | ||| ||||| ||||||||||||||||
Sbjct 61 ATCGGGAATCAACTT-G-G-AGAAGAAAA--ACAAAGGAGAATTTCTAAAGATGAATTTA 115
Query 121 GGGTTCTTAGTTGGAGTTTTCGGCGTTCTTATTCTTTCTCATGCCGCTTATTCAACAATC 180
|||||| |||||||| ||||||||||||| ||||| || |||||||||||||||||||||
Sbjct 116 GGGTTCGTAGTTGGATTTTTCGGCGTTCTGATTCTCTCACATGCCGCTTATTCAACAATC 175
Query 181 CAATATAGAGGATTGTTGAAGATTATGGAGGAAGAGTTTTCTCGACCACCGATTAATGTT 240
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 176 CAATATAGAGGATTGTTGAAGATCATGGAGGAAGAGTTTTCTCGACCACCGATTAATGTT 235
Query 241 ATTCTGGAGTTGATCATTGGACTAGCTCTGTGTATGTGGGCTGCTTTGACTTTCCCTGGT 300
||||||||| ||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 236 ATTCTGGAGCTGATCATCGGGCTAGCTCTGTGTATGTGGGCTGCTTTGACTTTTCCTGGG 295
Query 301 AAATTTCTCTCGATCCATCCGGATTCTGATGAAAACAGGGCGGTGTTTTTACCAGATAAT 360
||||| ||||| ||||||||||| ||||||||||||||| | |||| ||||||||||||
Sbjct 296 AAATTCCTCTCCATCCATCCGGACTCTGATGAAAACAGGACTGTGTCTTTACCAGATAAC 355
Query 361 TCGGATTTCATGATATTCAATCACCGTGGCAGACTGTTCCCACCGCAGATCGACATGAAG 420
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 356 TCAGATTTCATGATATTCAATCACCGTGGCAGACTGTTCCCACCGGAGATCGACATGAAG 415
Query 421 TTTTGAATTTTTATCACACTGCTTAGTCAAACACTGATCTGTGTAATGTTATGAGATGTT 480
||||| | ||||||||||||||||||||||||| |||||| | ||| |||||||||| ||
Sbjct 416 TTTTG-ACTTTTATCACACTGCTTAGTCAAACATTGATCTATCTAAAGTTATGAGATATT 474
Query 481 TCCATTGAAATTCTACTC-TAAGTAACTACTCTGCTTTGCATCAATTTTTGATTCTTGAA 539
||||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 475 TCCATTGAACTTATACTCTTAAGCAACTACTCTGCTTTGCATCAATTTTTGATTCTTGAA 534
Query 540 ACGAGTCTTGTGATGTTTCTGTGTGTC 566
|||||||||| || |||||||||||||
Sbjct 535 ACGAGTCTTGAGAAGTTTCTGTGTGTC 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20718484827
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5