BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03360.1
Length=4923
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939716 jgi|Araly1|939716|scaffold_600260.1 239 2e-61
Ahg347590 jgi|Araly1|347590|fgenesh1_pg.C_scaffold_5000982 126 1e-27
Ahg487109 jgi|Araly1|487109|fgenesh2_kg.6__243__AT5G03370.1 84.2 8e-15
> Ahg939716 jgi|Araly1|939716|scaffold_600260.1
Length=977
Score = 239 bits (129), Expect = 2e-61
Identities = 219/262 (84%), Gaps = 7/262 (3%)
Strand=Plus/Plus
Query 2389 GAGCCTAAGTCGAAGATCATATCGCTCATAAAGCAAATAATCTCTGTCAGCAACTC---T 2445
||||| |||||||||||||||| || || ||||||| |||| | ||| ||||||| |
Sbjct 178 GAGCCGGAGTCGAAGATCATATCACTGATGAAGCAAACAATCGCCGTCGGCAACTCTGTT 237
Query 2446 GTTTCAGGACCAGGACCAGAGTGCG-AGTTGGTATCACTGGTGACTAAAATGATCTCTAT 2504
||||||||| |||||||||| | || |||||||| |||||||||||||||||||||||||
Sbjct 238 GTTTCAGGATCAGGACCAGA-TTCGCAGTTGGTAACACTGGTGACTAAAATGATCTCTAT 296
Query 2505 CATCAGCTCTACATATTTTGATCTCAAGCAGTCAGAGCCGGAGCTTATA-TCACTTACCG 2563
||||| ||| | | ||| ||||| |||| |||||||||||||||| | | ||||| |
Sbjct 297 CATCAACTCCATAGATTCTGATCCCAAGGAGTCAGAGCCGGAGCTGA-ACTCACTCATTT 355
Query 2564 CTCAAATATTCTCTATCCTCCTAGCAATGGACCAGCGCTCGGAGCTCTTAACACTCCTTT 2623
||||| |||||||||||||||| | |||||||| | |||||||||||| |||| ||||
Sbjct 356 CTCAAGTATTCTCTATCCTCCTTGAAATGGACCCGAATTCGGAGCTCTTATCACTTCTTT 415
Query 2624 CTCAGCTAGGCCGTCTCGTCCA 2645
||||| |||||| ||| |||||
Sbjct 416 CTCAGTTAGGCCATCTGGTCCA 437
> Ahg347590 jgi|Araly1|347590|fgenesh1_pg.C_scaffold_5000982
Length=855
Score = 126 bits (68), Expect = 1e-27
Identities = 95/107 (89%), Gaps = 6/107 (6%)
Strand=Plus/Plus
Query 3757 CATTTTCGATGTCG-AGGTTGCAATGGTGAGAACCATAAAGGTTATGAAC-AGGCTCCGG 3814
||||||||||| || |||||||||||| ||||||||| ||| ||| ||| || ||||||
Sbjct 571 CATTTTCGATG-CGCAGGTTGCAATGGCGAGAACCATGAAGAATAT-AACAAGACTCCGG 628
Query 3815 TTGATG-TCAAACACCCTCTTCATCCAAAACATTCTCTTCAGCTTGT 3860
|||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 629 TTGA-GATCAAACACCATCTTCATCCAAAACATTCTCTTCAGCTTGT 674
> Ahg487109 jgi|Araly1|487109|fgenesh2_kg.6__243__AT5G03370.1
Length=546
Score = 84.2 bits (45), Expect = 8e-15
Identities = 47/48 (98%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 2066 AGGAGGACCACGGCGGCACCTCTGATGCATCTCATCAACAGCTTCAGG 2113
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 458 AGGAGGACCACGGCGACACCTCTGATGCATCTCATCAACAGCTTCAGG 411
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 186329877408
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5