BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03370.1
Length=764
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487109 jgi|Araly1|487109|fgenesh2_kg.6__243__AT5G03370.1 821 0.0
> Ahg487109 jgi|Araly1|487109|fgenesh2_kg.6__243__AT5G03370.1
Length=546
Score = 821 bits (444), Expect = 0.0
Identities = 519/553 (94%), Gaps = 14/553 (3%)
Strand=Plus/Plus
Query 1 AGAACAATTACTTCCAACGGAGAATGGCCTCAATTGTCGGAATTCGAACAAGATTCCTGA 60
|||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1 AGAACATTTACTTTTAACGGAGAATGGCCTGGATTGTCGGAATTCGAACAAGATTCCTGA 60
Query 61 GTTTCGGGAAGCTTT-CACAAATCTCTTCTTCACTGTTGAGAATAC-ACAATCCTCGTAA 118
||||||||||| ||| |||||||||||||||||||||||||||| | | ||||||||||
Sbjct 61 GTTTCGGGAAG-TTTCCACAAATCTCTTCTTCACTGTTGAGAAT-CTATTATCCTCGTAA 118
Query 119 TCATCAGAATCC-TCTTATTCTCCCTCTTCCTT-GTTTCTCTGCCGCTCC-TAGTCGTCA 175
|||||||||||| || | |||| |||||||||| | ||||||||||| || ||||||||
Sbjct 119 TCATCAGAATCCTTC-TCTTCTTCCTCTTCCTTCG-TTCTCTGCCGC-CCATAGTCGTCG 175
Query 176 TCGTCCTCTGATTTGGCTTCGCTCATCTCCGCCTGTGTCC-TCGATGACCACTCAGGCTG 234
|||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 176 TCGTCCTCTGCTTTGGCTTCGCTCATCTCCGCCTGTGTCCTTC-ATGACCACTCAGGCTG 234
Query 235 AATCTGGGTCTTCCCAGCAATCCGATTCTTCCAAAACGGTGAGAGTGGTGATAAAGGGAA 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 AATCTGGGTCTTCCCAGCAATCCGATTCTTCCAAAACGGTGAGAGTGGTGATAAAGGGAA 294
Query 295 GAGTACAGGGAGTGTGCTACAGAAACTGGACTGTTGAGAACGCTGAGCAGCT-GGGGATA 353
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 295 GAGTACAGGGAGTGTGCTACAGAAACTGGACTGTTGAGAACGCTGAGCAGCTTGGGGTTA 354
Query 354 AAGGGATGGGTTAGGAACCGCAGGGATGGTTCAGTGGAAGCACTCTTTTCAGGACCACCT 413
| ||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 355 A-GGGATGGGTGAGGAACCGCAGGGACGGTTCAGTGGAAGCACTCTTTTCTGGACCACCT 413
Query 414 GAAGCTGTTGATGAGATGCATCAGAGGTGTCGCCGTGGTCCTCCTGCAGCCATGGTTACC 473
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 414 GAAGCTGTTGATGAGATGCATCAGAGGTGTCGCCGTGGTCCTCCTGCAGCCATGGTAACT 473
Query 474 GGTTTGGAGGCTTTCCCTTCCACTGAAGAACCTGGATCAAGTTTTGAATACAGATCAACC 533
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 GGCTTGGAGGCTTTCCCTTCCACTGAAGAACCTGGATCAAGTTTTGAATACAGATCCACC 533
Query 534 GTCTGATTGATTC 546
|||||| ||||||
Sbjct 534 GTCTGACTGATTC 546
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28172835663
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5