BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03380.1
Length=1586
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939718 jgi|Araly1|939718|scaffold_600262.1 1821 0.0
> Ahg939718 jgi|Araly1|939718|scaffold_600262.1
Length=1197
Score = 1821 bits (986), Expect = 0.0
Identities = 1139/1208 (94%), Gaps = 30/1208 (2%)
Strand=Plus/Plus
Query 101 CTACTACTACGATGGGTGAGAAAAAGGAAGAAACGGCGACGAAACCTCAAGGAGAGAAGA 160
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 12 CTACTACTTCCATGGGTGAGAAAAAGGAAGAAACGGCGACGAAACCTCAAGGAGAGAAGA 71
Query 161 AACCTACCGATGGTGGAATCACCACCGTCGTTATGAAGCTTGATATGCATTGTGAAGGTT 220
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 AACCTGTCGATGGTGGTATCACCACCGTCGTTATGAAGCTTGATATGCATTGTGAAGGTT 131
Query 221 GCGGCaaaaaaaTCAAACGCATCTTCAAACATTTCAAAGGTGTGGAAGATGTGAAGATTG 280
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 132 GCGGCAAGAAAATCAAACGAATCTTCAAACATTTCAAAGGTGTGGAAGATGTGAAGATTG 191
Query 281 ATTATAAGAGTAACAAATTGACGGTGATCGGAAACGTAGATCCAGTGGAAGTTCGTGATA 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 ATTATAAGAGTAACAAATTGACGGTGATCGGAAACGTAGATCCAGTGGAAGTTCGTGATA 251
Query 341 AAGTGGCCGACAAAATTAAGAGACCAGTCGAACTTGTCTCTACAGTAGCGCCGCCGAAGA 400
|||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 252 AAGTGGCCGAGAAAATTAAGAGACCAGTCGAACTCGTCTCTACAGTTGCGCCACCGAAGA 311
Query 401 AAGAGACACCTCCTTCATCAGGCGGTGCAGAGAAGAAGCCTTCTCCGGCAGCGGAGGAGA 460
|||| |||||||||||| ||||||| ||| | ||||||| || |||| | | ||||||
Sbjct 312 AAGACACACCTCCTTCA---GGCGGTG-AGA-A-GAAGCCTCCTGCGGC-G-G-AGGAGA 362
Query 461 AACCGGCTGAGAAGAAACCAGCCGCCGTTGAGAAACCCGGTgagaaaaaagaagagaaga 520
||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct 363 AACCGGCTGAGAAAAAACCAGCCGCCGATGAGAAATCCGGTGAGAAAAAAGAAGAGAAGA 422
Query 521 agaaagaggaaggagagaagaaagCTTCTCCTCCACCACCACCTAAAGAGAGTACTGTGG 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 423 AGAAAGAGGAAGGAGAGAAGAAAGCTTCTCCTCCACCACCACCTAAAGAGAGTACTGTGG 482
Query 581 TTTTGAAGACCAAGTTACATTGTGAAGGTTGCGAACACAAAATCAAAAGAATAGTCAACA 640
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 483 TTTTGAAGACGAAGTTACATTGTGAAGGTTGCGAACACAAAATCAAAAGAATAGTCAACA 542
Query 641 AAATTAAAGGGGTTAATTCGGTTGCTATTGATAGTGCCAAGGATTTGGTTATAGTTAAGG 700
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 543 AAATTAAAGGGGTTAATTCAGTTGCTATTGATAGTGCCAAGGATTTGGTTATAGTTAAGG 602
Query 701 GGATCATTGACGTGAAACAACTCACTCCTTATCTTAACGAGAAGCTTAAACGCACGGTGG 760
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 603 GGATCATTGACGTGAAACAGCTCACTCCTTATCTTAACGAGAAGCTTAAACGCACGGTTG 662
Query 761 AAGTTGTTCCGGCCAAAAAGGATGACGGAGCACCAGTGGCAGC---TGCAGCGGCGGCTC 817
||||||||||||| |||||||||||||||||||| |||||||| |||||| || ||||
Sbjct 663 AAGTTGTTCCGGCGAAAAAGGATGACGGAGCACCCGTGGCAGCGGCTGCAGCTGCAGCTC 722
Query 818 CAGCTGGCGGTGAGAAGAAGGACAAAGTTGCTGGTgaaaagaaagagattaaagatgttg 877
|||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||
Sbjct 723 CAGCTGGCGGTGAGAAAAAGGACAAAGGTGCTGGTGAAAAGAAAGAGAACAAAGATGTTG 782
Query 878 gagaaaagaaagtcgacggtggtggtgagaagaagaaagaagTTGCTGTTGGCGGCGGTG 937
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GAGAAAAGAAAGTCGACGGTGGTGGTGAGAAGAAGAAAGAAGTTGCTGTTGGCGG----- 837
Query 938 GAGGAGGAGGTGGAGGTGGAGGAGACGGTGGTGCTATGGATGTGAAGAAATCGGAGTATA 997
||||||||| || | |||||||||||| ||||||||||||||||||||||
Sbjct 838 -AGGAGGAGG---AG----A-----CGGTGGTGCTATTGATGTGAAGAAATCGGAGTATA 884
Query 998 ACGGTTACGGTTATCCTCCACAGCCGATGTATTACTACCCAGAAGGACAAGTATACGGTC 1057
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 885 ACGGTTACGGTTATCCTCCACAGCCGATGTATTACTACCCACAAGGACAAGTATACGGTC 944
Query 1058 AACAACATTACATGATGCAAGGTCAATCATCGCAATCGTATGTACAAGAACCGTATTCGA 1117
||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |
Sbjct 945 AACAACATTACATGATGCAAGGTCAATCATCTCAATCGTATGTACAAGAACCGTATACAA 1004
Query 1118 ACCAAGGATACGTGCAAGAATCGTATATGAACCAAGGTTACGGTCAAGGGTATGGACAAG 1177
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1005 ACCAAGGATACGTACAAGAATCGTATATGAACCAAGGTTACGGTCAAGGGTATGGACAAG 1064
Query 1178 AAGCTCCACCACCACCATATATGAACCAACAAGGTTACGCAGATCCTTATGGTCACATGC 1237
|||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1065 AAGCACCACCACCACCATATATGAACCACCAAGGTTACGCGGATCCTTATGGTCACATGC 1124
Query 1238 GTGCGCCTGAGTTGTTTAGTGATGAGAATCCAAATGGGTGTTCTGTGATGTGAGTAAAAC 1297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 GTGCGCCTGAGTTGTTTAGTGATGAGAATCCAAATGGGTGTTCTGTGATGTGAGTAAAAC 1184
Query 1298 AAATGGGG 1305
|| |||||
Sbjct 1185 AAGTGGGG 1192
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59420782200
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5