BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03390.1
Length=1536
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939719 jgi|Araly1|939719|scaffold_600263.1 1622 0.0
Ahg939803 jgi|Araly1|939803|scaffold_600347.1 532 2e-150
Ahg939804 jgi|Araly1|939804|scaffold_600348.1 475 4e-133
> Ahg939719 jgi|Araly1|939719|scaffold_600263.1
Length=1174
Score = 1622 bits (878), Expect = 0.0
Identities = 1081/1177 (92%), Gaps = 21/1177 (2%)
Strand=Plus/Plus
Query 250 GTCTAGGGTTTTC-ATTTTCAACAATGTCTCAGCTTTTGGGTCGAACCGCTAAGATCTCC 308
||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 1 GTCTAGGGTTTTCAATTTT-AACAATGTCTCAGCTTTTGGGTCGAATCGCTAAGATCTCC 59
Query 309 TCAGTTGTGAAGAAGCAGAGACTCTGTTTCAGTGAACTGCGGTCTTTCTCCACGGCGGCG 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TCAGTTGTGAAGAAGCAGAGACTCTGTTTCAGTGAACTGCGGTCTTTCTCCACGGCGGCG 119
Query 369 ACGCCGTATCTGCTTTTAAAG-GATACCAACTACA----GG-GCGG----CGTCTGGTGG 418
||||||||||||||||| | || |||||||||| || | || | | ||||||
Sbjct 120 ACGCCGTATCTGCTTTT-CTGTGAGACCAACTACAGGTTGGTGAGGACACCATTTGGTGG 178
Query 419 ATCAGTGGTCGACATTAACCTGTATGATCCGAGGAAGAAGGAAATAGTGAAAATTCGCGA 478
| |||||||||||||||||||||| ||||||||||||||||||| ||||||| | | |||
Sbjct 179 AGCAGTGGTCGACATTAACCTGTACGATCCGAGGAAGAAGGAAACAGTGAAAGTCCCCGA 238
Query 479 CCAATATCTGTCGGAGGAGCTCCAATGTACGATGAAGATGGGATCTTCGAGGGGATGGAT 538
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 239 CCAATATCTGTCCAAGGAGCTCCAATGTACGATGAAGATGGGATCTTCGAGGGGATGGGT 298
Query 539 TGTTGCGA-AGACGATATACGAGC-CCACATTGTATCTCACTAATATCTTCAACCCGTGT 596
|||||||| | || |||| ||| | |||||||| |||||| |||||||||||||| |||
Sbjct 299 TGTTGCGAGAAAC-ATATTCGA-CTCCACATTGCGTCTCACCAATATCTTCAACCCTTGT 356
Query 597 GCCTCTGTTTCGTCACATAAGGTTTTCAATCTGCCTCCATTGGAGGATGATGCTAAAGCT 656
|||||||||||||| || |||||| ||| |||||||||||||||||||||||||||||||
Sbjct 357 GCCTCTGTTTCGTCTCACAAGGTTATCACTCTGCCTCCATTGGAGGATGATGCTAAAGCT 416
Query 657 CGTATCTCCAGTATCTCTCTATCAGCCTCTCCAAACCAGCAAGACTGTGTATTGGCAGTC 716
| |||||||| ||||||| | |||||||| ||| ||||||||||||||||| |||||| |
Sbjct 417 CTTATCTCCACTATCTCTTTCTCAGCCTCCCCAGACCAGCAAGACTGTGTAGTGGCAGCC 476
Query 717 AAGTCCTCTAGTAGTCCATTCCTCAGCCTGTGGCGGCCTGGTGACTCGGCTTGGACACGC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 AAGTCCTCTAGTAGTCCATTCCTCAGCCTGTGGCGGCCTGGTGACTCGGCTTGGACACGC 536
Query 777 ATCAAGGTCCCGTTTCCTGCCTCCAATGTGATGATGTATTCTG-GAAGAGACCGCAAGTT 835
|||||||||||||||||||||||||| ||||| |||||||||| || |||||||||||||
Sbjct 537 ATCAAGGTCCCGTTTCCTGCCTCCAAGGTGATAATGTATTCTGCGA-GAGACCGCAAGTT 595
Query 836 CTATCTCCTCCCCAGGGAGAGTAAGGAAGAGTGTGAGGGTCCCATTGATCTCATCAACAC 895
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 596 CTATCTCCTCCCAAGGGAGAGTAAGGAAGAGTACGAGGGTCCCATTGATCTCATCAACAC 655
Query 896 TAGCTCCGACGACTTCCCTCAGGTGACTCTGTACCAGAGATTCCCTAACTCTGACATCCC 955
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct 656 TAGCTCCGACGACTTCCCTCAGGTGAGTCTGTACCAGGGATTCCCTAACTCTGACATCCC 715
Query 956 CGTGAGTAGGCAAGAACAGCTTCTCTCAAGTATCAAGACTCGATACCTGGTCGAGTCACC 1015
||||||||| |||||||||||| |||| | |||||||||| ||| || |||||||||||
Sbjct 716 CGTGAGTAGACAAGAACAGCTTGTCTCTACTATCAAGACTAAATATCTCGTCGAGTCACC 775
Query 1016 TTCTGGCGACTCCTTCATCGTTTACTGGTGTAATGAGAGATCCTTCTATTGGAAGAAAGG 1075
||||||||||||||||||||||||||||| ||||||||||||||| |||| |||| ||||
Sbjct 776 TTCTGGCGACTCCTTCATCGTTTACTGGTATAATGAGAGATCCTTATATTTGAAGGAAGG 835
Query 1076 AGAAGTGAAGCCGTGGACCGGAAAGAACCCTCCTCCT-TCAAGGATCTCTTGCAGGCTTA 1134
| ||||| ||||||||| ||| |||||||| |||||| | |||||||||||||||| ||
Sbjct 836 AAAAGTGGAGCCGTGGAACGGCAAGAACCCCCCTCCTAT-AAGGATCTCTTGCAGGAGTA 894
Query 1135 AGACCAGAACCTTTGTGGTTTTTAGACAAGACAGTGAGCAAGGAATCGGTTCATACACTG 1194
||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 895 AGACCAGAACCTTTGTGGTGTTTAGACAAGACCTTGAGCAAGGGTTCGGTTCATACACTG 954
Query 1195 AAGACATTGGCGATCTCTGCATTTTCCTAGGCCATAGGGAGGCCTTTTGCGTCTCTGCAA 1254
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 955 AAGACATTGGCGATCTCTGCATTTTCCTAGGCCAAAGGGAGGCCTTTTGCTTCTCTGCAA 1014
Query 1255 CCGAATATCCCGGACTTCGCCCTAATTCTGTCTACTATGCAACCTCGGGCACGGGGTTTG 1314
|||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||
Sbjct 1015 CCGAATATCCCGGACTTCACCCTAATTCTGTCTACTATGCAAGCTCGGGCACTGGGTTTG 1074
Query 1315 GTTACTACGACCTCTCCTCCAACACTCTCCACGACGTTATCCATGAGGGCCTTTTCTCGT 1374
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1075 GTTACTACGACCTCTCCTCCAACACTCTCCACGACGTTATCCATGAGGCCCCTTTCTCGT 1134
Query 1375 GGATTGCCCCACTCCAGTGAATAGAGCTTATTTGCTC 1411
|| ||||||| |||||||||||| |||||||||||||
Sbjct 1135 GGCTTGCCCCTCTCCAGTGAATATAGCTTATTTGCTC 1171
> Ahg939803 jgi|Araly1|939803|scaffold_600347.1
Length=457
Score = 532 bits (288), Expect = 2e-150
Identities = 344/371 (93%), Gaps = 4/371 (1%)
Strand=Plus/Plus
Query 1043 GTGTAATGAGAGATCCTTCTATTGGAAGAAAGGAGAAGT-GAAGCCGTGGACCGGAAAGA 1101
|||||||||||||||||| |||| ||||||||||||||| ||| ||||||| ||| ||||
Sbjct 86 GTGTAATGAGAGATCCTTATATTTGAAGAAAGGAGAAGTGGAA-CCGTGGAACGGCAAGA 144
Query 1102 ACCCTCCTCCT-TCAAGGATCTCTTGCAGGCTTAAGACCAGAACCTTTGTGGTTTTTAGA 1160
|||| |||||| | |||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 145 ACCCCCCTCCTAT-AAGGATCTCTTGCAGGAGTAAGACCAGAACCTTTGTGGTGTTTAGA 203
Query 1161 CAAGACAGTGAGCAAGGAATCGGTTCATACACTGAAGACATTGGCGATCTCTGCATTTTC 1220
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 CAAGACCTTGAGCAAGGGATCGGTTCATACACTGAAGACATTGGCGATCTCTGCATTTTC 263
Query 1221 CTAGGCCATAGGGAGGCCTTTTGCGTCTCTGCAACCGAATATCCCGGACTTCGCCCTAAT 1280
|||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 264 CTAGGCCAAAGGGAGGCCTTTTGCGTCTCTGCAACCGAATATCCCGGACTTCACCCTAAT 323
Query 1281 TCTGTCTACTATGCAACCTCGGGCACGGGGTTTGGTTACTACGACCTCTCCTCCAACACT 1340
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 324 TCTGTCTACTATGCAAGCTCGGGCATTGGGTTTGGTTACTACGACCTCTCCTCCAACACT 383
Query 1341 CTCCACGACGTTATCCATGAGGGCCTTTTCTCGTGGATTGCCCCACTCCAGTGAATAGAG 1400
|||||||||||||||||||||| || |||||||||| ||| ||| ||||||| |||| ||
Sbjct 384 CTCCACGACGTTATCCATGAGGCCCCTTTCTCGTGGCTTGTCCCTCTCCAGTAAATATAG 443
Query 1401 CTTATTTGCTC 1411
|||||||||||
Sbjct 444 CTTATTTGCTC 454
> Ahg939804 jgi|Araly1|939804|scaffold_600348.1
Length=522
Score = 475 bits (257), Expect = 4e-133
Identities = 298/318 (94%), Gaps = 2/318 (1%)
Strand=Plus/Plus
Query 1074 GGAGAAGTGAAGCCGTGGACCGGAAAGAACCCTCCTCCT-TCAAGGATCTCTTGCAGGCT 1132
||||||||| ||||||||| ||| |||||||| |||||| | ||||||||||||||||
Sbjct 41 GGAGAAGTGGAGCCGTGGAACGGCAAGAACCCCCCTCCTAT-AAGGATCTCTTGCAGGAG 99
Query 1133 TAAGACCAGAACCTTTGTGGTTTTTAGACAAGACAGTGAGCAAGGAATCGGTTCATACAC 1192
||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||
Sbjct 100 TAAGACCAGAACCTTTGTGGTGTTTAGACAAGACCTTGAGCAAGGGATCGGTTCATACAC 159
Query 1193 TGAAGACATTGGCGATCTCTGCATTTTCCTAGGCCATAGGGAGGCCTTTTGCGTCTCTGC 1252
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 160 TGAAGACATTGGCGATCTCTGCATTTTCCTAGGCCAAAGGGAGGCCTTTTGCGTCTCTGC 219
Query 1253 AACCGAATATCCCGGACTTCGCCCTAATTCTGTCTACTATGCAACCTCGGGCACGGGGTT 1312
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||||
Sbjct 220 AACCGAATATCCCGGACTTCACCCTAATTCTGTCTACTATGCAAGCTCGGGCACTGGGTT 279
Query 1313 TGGTTACTACGACCTCTCCTCCAACACTCTCCACGACGTTATCCATGAGGGCCTTTTCTC 1372
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 280 TGGTTACTACGACCTCTCCTCCAACACTCTCCACGACGTTATCCATGAGGCCCCTTTCTC 339
Query 1373 GTGGATTGCCCCACTCCA 1390
|||| ||||||| |||||
Sbjct 340 GTGGCTTGCCCCTCTCCA 357
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57516269950
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5