BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03415.1
Length=1621
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487116 jgi|Araly1|487116|fgenesh2_kg.6__250__AT5G03415.1 2109 0.0
> Ahg487116 jgi|Araly1|487116|fgenesh2_kg.6__250__AT5G03415.1
Length=1590
Score = 2109 bits (1142), Expect = 0.0
Identities = 1421/1546 (92%), Gaps = 58/1546 (4%)
Strand=Plus/Plus
Query 51 AACCCCGATCGACTTATCCTCCTCCTTCTCCGGCGAAATC-CATTAACTCTCCGCCGCGA 109
||| ||||||||||||||||||||||||||||||| |||| | | ||||||| | |||||
Sbjct 39 AACTCCGATCGACTTATCCTCCTCCTTCTCCGGCG-AATCTC-TAAACTCTCTGACGCGA 96
Query 110 AAACCACCTTTCCAGAGTAGTATCACACTAAGAATTCTAATGTTGATCCGCCATTATTGA 169
|||||||| |||||||| ||||||||||||| || ||||||| |||||||||||||||||
Sbjct 97 AAACCACCGTTCCAGAGAAGTATCACACTAATAAATCTAATGGTGATCCGCCATTATTGA 156
Query 170 AGCTTCTAATTCTCGTTAATAACC--AAAAACCCAAGTCGATTTTCAAGTAGC------- 220
| ||||||||||||||||||| || ||||||| || ||||||||||||||||
Sbjct 157 ACCTTCTAATTCTCGTTAATATCCAAAAAAACCGAACTCGATTTTCAAGTAGCGGTTTGT 216
Query 221 GC-GGTAGTTAGTTTTAGGTGGAAGAAGAATGACAACTACTGGGTCTAATTCTAATCACA 279
|| ||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 217 GCGGGTAGTTAG-TTTAGGTGGAAGAAGAATGAC-A--ACTGGGTCTAATTCTAATCACA 272
Query 280 ACCA-C----C-A----T---G-A-AAGCAATAATAACAACAATAACCCTAGTACTAGGT 324
|||| | | | | | | |||||||||||| ||||||||||||||||||||||
Sbjct 273 ACCACCATGACGATGGTTCCGGTAGAAGCAATAATAATAACAATAACCCTAGTACTAGGT 332
Query 325 CTTGGGGCACGGCGGTTTCAGGTCAATCTGTGTCTACTAGCGGCAGTATGGGCTCTCCGT 384
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 333 CTTGGGGCACGGCGGTTTCAGGTCAATCTGTGTCTACTAGCGGCAGTATGGGCTCTCCCT 392
Query 385 CGAGCCGGAGTGAGCAAACCATCACCGTTGTTACATCTACTAGCGACACTACTTTTCAAC 444
|||||||||||||||||||||||||||||| ||||||| ||||||| | |||||||| ||
Sbjct 393 CGAGCCGGAGTGAGCAAACCATCACCGTTGCTACATCTGCTAGCGATAGTACTTTTCTAC 452
Query 445 GCCTGAATAATTTGGACATTCAAGGTGATGATGCTGGTTCTCAAGGAGCTTCTGGTGTTA 504
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 453 GCATGAACAATTTGGACATTCAAGGTGATGATGCTGGTTCTCAAGGAGCTTCTGGCATTA 512
Query 505 AGAAGAAGAAGAGGGGACAGCGTGCGGCTGGTCCAGATAAGACTGGAAGAGGACTACGTC 564
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 513 AGAAGAAGAAGAGGGGACAGCGTGCGGCTGGTCCAGATAAGAGTGGAAGAGGACTACGTC 572
Query 565 AATTTAGTATGAAAGTTTGTGAAAAGGTGGAAAGCAAAGGAAGGACAACTTACAATGAGG 624
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 573 AATTTAGCATGAAAGTTTGTGAAAAGGTGGAAAGCAAAGGAAGGACAACTTACAATGAGG 632
Query 625 TTGCAGACGAGCTTGTTGCTGAATTTGCACTTCCAAATAACGATGGAACATCCCCTGATC 684
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 TTGCAGACGAGCTTGTTGCTGAATTTGCACTTCCAAATAACGATGGAACATCCCCTGATC 692
Query 685 AGCAACAGTATGATGAGAAAAACATAAGACGAAGAGTATATGATGCTTTAAACGTCCTCA 744
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 693 AGCAACAGTATGATGAGAAGAACATAAGACGAAGAGTATATGATGCTTTAAACGTCCTCA 752
Query 745 TGGCTATGGATATAATATCCAAGGATAAAAAAGAAATTCAATGGAGAGGTCTTCCTCGGA 804
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 753 TGGCTATGGATATAATATCCAAGGATAAAAAAGAGATTCAATGGAGAGGTCTTCCTCGAA 812
Query 805 CAAGCTTAAGCGACATTGAAGAATTAAAGAACGAACGACTCTCACTTAGGAACAGAATTG 864
|||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 813 CAAGTTTAAGCGACATTGAAGAATTAAAGAACGAACGGCTTTCACTTAGGAACAGAATTG 872
Query 865 AGAAGAAAACTGCATATTCCCAAGAACTGGAAGAACAATATGTAGGCCTTCAGAATCTGA 924
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AGAAGAAAACTGCATATTCCCAAGAACTGGAAGAACAATATGTAGGCCTTCAGAATCTGA 932
Query 925 TACAGAGAAATGAGCACTTATATAGCTCAGGAAATGCTCCCAGTGGCGGTGTTGCTCTTC 984
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 933 TACAGAGAAATGAGCACTTATATAGCTCAGGAAATGCTCCCAGTGGTGGTGTTGCTCTTC 992
Query 985 CTTTTATCCTTGTCCAGACTCGTCCTCACGCAACAGTAGAAGTGGAGATATCAGAAGATA 1044
|||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 993 CTTTTATCCTTGTCCAGACTCGTCCTCATGCGACAGTAGAAGTGGAAATATCAGAAGATA 1052
Query 1045 TGCAGCTCGTGCATTTTGATTTCAACAGCACTCCATTTGAGCTCCACGACGACAATTTTG 1104
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1053 TGCAGCTTGTGCATTTTGATTTCAACAGCACTCCATTCGAGCTCCACGACGACAATTTTG 1112
Query 1105 TCCTCAAGACTATGAAGTTTTGTGATCAACCGCCGCAACAACCAAACGGTCGGAACAACA 1164
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1113 TCCTCAAGACTATGAAGTTTTGTGATCAACCGCCGCAACAACCAAACGGTCACAACAACA 1172
Query 1165 GCCAGCTGGTTTGTCACAATTTCACGCCAGAAAACCCTAACAAAGGCCCCAGCACAGGTC 1224
||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1173 GCCAGGTGGTTTCTCACAATTTCACGCCAGAAAACCCTAACGAAGGCCCCAGCACAGGTC 1232
Query 1225 CAACACCGCAG-CTGGATATGTACGAGACTCATCTTCAATCGCAACAACATCAGCAGCAT 1283
|| | |||||| | |||||||||| || ||||||| ||| ||||||||||| ||||||||
Sbjct 1233 CAGCGCCGCAGGC-GGATATGTACCAGTCTCATCTCCAACCGCAACAACATGAGCAGCAT 1291
Query 1284 TCTCAGCTACAAATCATTCCTATGCCTGAGACTAACAACGTTACTTCCAGC-GCTGATAC 1342
||||||||||||||||||| || || ||||||||||| ||| ||||| || ||||||||
Sbjct 1292 TCTCAGCTACAAATCATTCGTACACCGGAGACTAACAAAGTTGCTTCC-GCCGCTGATAC 1350
Query 1343 TGCTCCAGTGAAATCCCCGTCTCTTCCAGGGATAATGAACTCCAGCATGAAGCCGGAGAA 1402
||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||
Sbjct 1351 TGCTCCAGTGAAATCACCGTCGCTCCCAGGGATAATGAACTCCAGCGTGAAGCCGGAGAA 1410
Query 1403 TTGAAACACGTATGAAGGCCCCTTGTACAATTTCTGTAAAACTGTAAAGTAGCTCTTGAA 1462
||||||||||||||||| ||| |||||||||||||||||||||||||||||| | ||
Sbjct 1411 TTGAAACACGTATGAAGACCC-TTGTACAATTTCTGTAAAACTGTAAAGTAG-T-TT--- 1464
Query 1463 AAACTTTACCTGGTTTTTTGACGAATAGTCTGTTTAGCGGTAAATGTACCGGTGGTTTAT 1522
||| | | |||||| | |||||||||||||||||||||||||||||
Sbjct 1465 ----TTT----GA------G--GAATAGCCGGTTTAGCGGTAAATGTACCGGTGGTTTAT 1508
Query 1523 CGAATCTAGGATCCTTGTCGGGTTTAGCGATTTTAAGAATCTTTGC 1568
||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1509 CGAATCTAGGATCGTACTCGGGTTTAGCGATTTTAAGAATCTTTGC 1554
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60753940775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5