BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03430.1
Length=2019
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487118 jgi|Araly1|487118|fgenesh2_kg.6__252__AT5G03430.1 2946 0.0
Ahg487117 jgi|Araly1|487117|fgenesh2_kg.6__251__AT5G03420.1 89.8 7e-17
> Ahg487118 jgi|Araly1|487118|fgenesh2_kg.6__252__AT5G03430.1
Length=1814
Score = 2946 bits (1595), Expect = 0.0
Identities = 1734/1800 (96%), Gaps = 13/1800 (1%)
Strand=Plus/Plus
Query 104 ACTAAATAGTTCGGACGTGATTCTCGAGAT-AAAGGAGAGAAAGAAGA-AGATGGAGATC 161
|||||||| ||| |||| ||||||||| || |||| |||| ||| || |||||||||||
Sbjct 24 ACTAAATACTTCCGACGGGATTCTCGATATAAAAGCAGAG-AAG-CGAGAGATGGAGATC 81
Query 162 GATAAAGCGATCGGAGAAAGTGACGATAAGAGGTTGAAGACTAAGTACAATAACGCCATC 221
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 82 GATAAAGCGATCGGAGAAAGTGACGATAAGAGGTTGAAGACCAAGTACAACAACGCCATC 141
Query 222 TTCGTCATTAAAAGAGCTCTTGCTCTTTACTCTATTGAAGAGGTCGCCTTTAGTTTCAAT 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 142 TTCGTCATTAAAAGAGCTCTTGCTCTTTACTCTATTGAAGAGGTCGCCTTTAGTTTCAAT 201
Query 282 GGAGGAAAAGACTCCACTGTACTGTTGCACCTTCTTAGAGCTGGTTATTTTTTGCATAAA 341
|||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 202 GGAGGAAAAGACTCTACTGTACTGTTGCACCTTCTTAGGGCTGGCTATTTTTTGCATAAG 261
Query 342 AAAGAGCAGACTTGTTCTAATGGTGGTCTATCAAGTTTTCCAGTCCGGACCATTTATTTT 401
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 262 AAAGAGCAGACTTGTTCTAATGGAGGTCTATCAAGTTTTCCAGTCCGGACCATATATTTT 321
Query 402 GAGAGCCCTTCTGCCTTCACTGAAATCAATGCTTTTACATACGATGCTGCTCAAACTTAC 461
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||
Sbjct 322 GAGAGCCCTTCTGCCTTCACTGAAATCAATGCATTTACATATGATGCAGCTCAAACTTAC 381
Query 462 AATCTGCAACTTGATATCATTCGCCAGGATTTCAAATCCGGGTTGGAGGCATTATTAAAG 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 382 AATCTGCAACTTGATATCATTCGCCAGGATTTCAAATCCGGGTTGGAGGCATTATTAAAG 441
Query 522 GCTAACCCTATCAGAGCTATTTTCCTTGGCGTCCGAATTGGTGATCCTACTGCGGTTGGT 581
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 442 GCTAACCCTATCAGAGCTATTTTTCTTGGCGTCCGAATTGGTGATCCTACTGCGGTTGGT 501
Query 582 CAAGAGCAATTCTCTCCTAGTTCACCTGGATGGCCTCCCTTTATGAGGGTGAATCCTATA 641
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 502 CAAGAGCAATTCTCTCCTAGTTCACCTGGATGGCCGCCCTTTATGAGGGTGAATCCTATA 561
Query 642 TTGGATTGGTCCTACAGAGATGTTTGGGCGTTTCTCCTAACTTGCAAGGTCAAGTATTGC 701
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 562 TTGGATTGGTCGTACAGAGATGTTTGGGCATTTCTCCTAACTTGCAAGGTCAAGTATTGC 621
Query 702 AGTCTTTATGACCAGGGATATACATCAATTGGGAGCATTCATGATACGGTTCCCAACTCA 761
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 622 AGTCTTTATGACCAGGGATATACATCAATTGGGAGCATTCATGATACTGTTCCCAATTCA 681
Query 762 TTATTGTCTGTTAACGACACTAGTAGTAAAGAGAAATTCAAACCTGCTTATTTGCTTTCT 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 682 TTATTGTCTGTTAACGACACTAGTAGTAAAGAGAAATTCAAACCTGCTTATTTGCTTTCT 741
Query 822 GATGGGAGATTAGAAAGGGCAGGGAGAGTCAAGAAAATTGCTTCACTGAAAAAAGACGTA 881
||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||
Sbjct 742 GATGGGAGATTAGAAAGGGCAGGGAGAGTCAAGAAAATTGCTTCACTCAAATATGACGTA 801
Query 882 GATACCGAATCACAGAAACACGAGGTGCTTTTGGCCTCAGTAATTGCTGTCGGCGATGAG 941
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 GAAACCGAATCACAGAAACACGAGGTGCTTTTGGCCTCAGTAATTGCTGTCGGCGATGAG 861
Query 942 ATTCTGTCTGGCACTGTTGAGGATCAATTAGGACTGTCTTTGTGTAAGAAGTTGACTTCT 1001
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 862 ATTCTGTCTGGCACTGTTGAGGATCAATTAGGACTGTCTTTGTGTAAGAAGTTGACTTTT 921
Query 1002 GTCGGTTGGTCGGTGCAACAAACCACTGTCCTTCGGAATGATATAGATTCTGTATCCGAG 1061
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 922 GTCGGTTGGTCGGTGCAACAAACCACTGTCCTGCGGAATGATATAGATTCTGTTTCCGAG 981
Query 1062 GAAGTTGACCGCCAAAGGTCTACGAGTGATATGGTATTCATATATGGAGGAGTTGGTCCT 1121
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 982 GAAGTTGACCGCCAAAGGTCTACGAGTGATATGGTATTTATATATGGAGGAGTTGGTCCT 1041
Query 1122 TTGCATTCAGATGTTACTTTGGCCGGTGTTGCTAAGGCATTTGGAGTTCGCCTGGCACCT 1181
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1042 TTGCATTCAGATGTTACTTTGGCTGGTGTTGCTAAGGCATTTGGAGTTCGCCTGGCACCT 1101
Query 1182 GATGAAGAGTTTGAGGAATACCTTAGGCATCTTATCAGCGACCAGTGCACAGGTGACAGG 1241
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1102 GATGAAGAATTTGAGGAATACCTTAGGCATCTTATCAGCGAGCAGTGCACAGGTGACAGG 1161
Query 1242 AATGAGATGGCTCAGTTACCGGAAGGAATTACAGAACTACTGCATCATGAAAAGCTTTCT 1301
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 AATGAGATGGCTCAGTTACCGGAAGGAATTACAGAACTACTGCATCATGAAAAGCTTTCG 1221
Query 1302 GTGCCATTGATTAAGTGCCGCAATGTGATTGTTCTTGCTGCTACAAACACTGAGGAGCTC 1361
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1222 GTGCCATTGATCAAGTGCCGCAATGTGATTGTTCTTGCTGCTACAAACACTGAGGAGCTC 1281
Query 1362 GAGAAAGAGTGGGAATGTCTGACGGAACTTACTAAATTGGGTGGAGGTTCACTCATAGAA 1421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 GAGAAAGAGTGGGAATGTCTGACGGAACTTACTAAATTGGGTGGAGGTTCACTCATAGAA 1341
Query 1422 TATTCGTCGAGGCGCTTGATGACATCTTTAACAGATGTTGAAGTTGCAGAACCTCTGTCC 1481
|||||||| || ||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1342 TATTCGTCAAGACGCTTAATGACATCTTTAACAGATGTGGAAGTTGCAGAACCTCTGTCC 1401
Query 1482 AAACTAGGTCTCGAATTCCCAGACATATATCTTGGGTGTTACCGGAAATCTAGACAAGGT 1541
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 AAACTTGGTCTCGAATTCCCAGACATATATCTTGGGTGTTACCGGAAATCTAGACAAGGT 1461
Query 1542 CCTATCATCATCTGCTTAACGGGAAAGGATAATGCACGGATGGACTCAGCTGCACAGGCA 1601
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1462 CCTATCATCATCTGCTTAACGGGAAAGGATAATGCACGGATTGACTCAGCTGCACAGGCA 1521
Query 1602 CTACGCAAGAAATTCAAGAAAGATGTGTTCGTAGAAATCAAGTAGACACAAGTTTAAGAA 1661
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1522 CTATGCAAGAAATTCAAGAAAGATGTGTTCGTAGAAATCAAGTAGACACAAGTTTAAGAA 1581
Query 1662 CCGGTTGAGAAAGAGACACAGCTTCAATGGTCCACTTGAATGGCTTCTATGTACCGGTCA 1721
||||||||| ||||||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1582 CCGGTTGAGCAAGAGACGCAGCTTCAACGGTCCACTAGAATGGCTTCTATGTACCGGTCA 1641
Query 1722 CAGAACCTGAGAGGAAGTAACTGA-GAGGATAGGATCAGAATCTGACACTTTTTAAGGAA 1780
|| ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1642 CATAACCTGAGAGGAAGTAACTGAAGAGGATAGGATCGGAATCTGACACTTTTTAAGGAA 1701
Query 1781 ACTGGAAGCAGTTATTGTGGCGTAAACATATTTATCATA-ACCTATAAAATTGAATGTAT 1839
||||||||||||||||||||| |||||||||||||| | |||| |||||||||||||
Sbjct 1702 ACTGGAAGCAGTTATTGTGGCAAAAACATATTTATCA-AGACCTTTAAAATTGAATGT-- 1758
Query 1840 CACTCTTATCAGTTATCAACTCTAAATAATGAAATTTGTAGGAAAGTAACCCATAAGGGT 1899
| | | |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1759 C--T-T-ATCAGTTATCAACTCTAAATAACGAAATTTGTAGGAAAGTAACCCATAAGGGT 1814
> Ahg487117 jgi|Araly1|487117|fgenesh2_kg.6__251__AT5G03420.1
Length=2127
Score = 89.8 bits (48), Expect = 7e-17
Identities = 48/48 (100%), Gaps = 0/48 (0%)
Strand=Plus/Minus
Query 1972 CCTTATAAATGTATTATTTTACCTTAAATTACAATTTTGTACAGAGTC 2019
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2127 CCTTATAAATGTATTATTTTACCTTAAATTACAATTTTGTACAGAGTC 2080
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75913858285
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5