BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03440.1
Length=688
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487119 jgi|Araly1|487119|fgenesh2_kg.6__253__AT5G03440.2 699 0.0
> Ahg487119 jgi|Araly1|487119|fgenesh2_kg.6__253__AT5G03440.2
Length=690
Score = 699 bits (378), Expect = 0.0
Identities = 505/562 (90%), Gaps = 26/562 (5%)
Strand=Plus/Plus
Query 133 AGTACAATGGAAGCTAATAAGGAGCCTGGTAATGTGTCAAGTAATTCGAGCAATGATAAA 192
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 141 AGTACAATGGAAGCTAATAATGAGCCTGGTAATGTGTCAACTAATTCGAGCAATGATAAA 200
Query 193 GAGAAGTCGTCTGAGGA-GATCTTTGTCAACCATGCCGAGATTGCGTGGCAAGAGATGAG 251
||||| ||| |||| || ||||||||| || |||||||||||||||||||||||||||||
Sbjct 201 GAGAATTCGACTGA-GACGATCTTTGTGAATCATGCCGAGATTGCGTGGCAAGAGATGAG 259
Query 252 AAAGAAGTGGGTTGGTGATCCGTCTAATAGGACTTCAGAGATGCCTGATGAACCTGTAAT 311
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 260 AAAGAAGTGGGTTGGAGATCCGTCTAATAGGACTTCAGAGATGCCTGCTGAACCTGTAAT 319
Query 312 TGGTTTCAACGCTACCTATGAAGACTTGCTCACATCCAACACTCCTTTCAACAAGCCGAT 371
|| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 320 AGGCTTCAACGCTACTTATGAAGACTTGCTCACATCCAACAATCCTTTCAACAAGCCCAT 379
Query 372 CCCTCTAGCTGAAATGGTGGATTTTCTGTTCGATATCTGGCACGGGGATGGTCTTTTCGA 431
|||||||||||||| ||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 380 CCCTCTAGCTGAAACGGTGGATTTTCTGTTCGATATATGGCATGGGGATGGTCTTTTCGA 439
Query 432 GTAGGTAACAGAGAGGGGATTCTCAGTATTCTTGGTACAGAAATTTAGTTGCAGGATGGC 491
|||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 440 CTAGGTAACGGAGAGGGGATTCTCAGTATTCTTGGTACAGAA-TTTAGTTGCAGGCTGGC 498
Query 492 TCTAATCCATTTAGGTTTAAAGGATC--AAAGTCCTTTATCTTTAGAAGAAACTCTTGTT 549
|||||| ||||||||| ||||||||| ||| ||| |||||||||||||||||||| |||
Sbjct 499 TCTAATACATTTAGGTCTAAAGGATCTCAAATTCCATTATCTTTAGAAGAAACTCTGGTT 558
Query 550 TTTTCCATTGACTTACCATGAAGATATA--TAACTAAATTAGGT-TCTTTTGAGATTCTC 606
|||| ||||||||||||||||| ||||| ||| | |||||||| | |||||||||||||
Sbjct 559 TTTTGCATTGACTTACCATGAACATATAACTAATTTAATTAGGTAT-TTTTGAGATTCTC 617
Query 607 TTCCATGATAAATTCACCAAACCTGTATCATGCTTCTGATGCCATTTGGTTCTTTTCTTT 666
||||| | | | | || | ||||||||||||||||||||||| ||||||||
Sbjct 618 ATCCAT-A-A--T--A--AA---T----CATGCTTCTGATGCCATTTGGTTATTTTCTTT 662
Query 667 AAGATTGACACTTTAGTAGTGG 688
|| |||||| |||||||||||
Sbjct 663 AATATTGAC--TTTAGTAGTGG 682
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25275493971
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5