BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03450.1 Length=2137 Score E Sequences producing significant alignments: (Bits) Value Ahg487121 jgi|Araly1|487121|fgenesh2_kg.6__255__AT5G03450.1 2837 0.0 Ahg349657 jgi|Araly1|349657|fgenesh1_pg.C_scaffold_6000250 680 0.0 > Ahg487121 jgi|Araly1|487121|fgenesh2_kg.6__255__AT5G03450.1 Length=2023 Score = 2837 bits (1536), Expect = 0.0 Identities = 1894/2060 (92%), Gaps = 52/2060 (3%) Strand=Plus/Plus Query 16 CTTCTTCTCTTCCGAAATCTGATACAGTAACAGAAACGAACCTAATGCCGCCTCGCCGGA 75 ||||||||| |||||| |||| | | |||||||||||||||||||||||||||||| Sbjct 1 CTTCTTCTCCTCCGAATTCTG----A-T-ACAGAAACGAACCTAATGCCGCCTCGCCGGC 54 Query 76 GTTACCCCTTCAGTGGTCACGGAGGTACAATTGCACG-ATTCATTGAATTTGGGGAAGCA 134 |||||||||||||||||| ||||| || ||||||||| ||| ||||||||| | || | Sbjct 55 GTTACCCCTTCAGTGGTCCCGGAGATATAATTGCACGAATT-ATTGAATTT---G-AGGA 109 Query 135 TTTGGACACTATGGagaagaagaagacgaagaagaggaagacgaagaggaagCATATGT- 193 | || | ||| |||| | | | ||| ||||| | || | ||||| Sbjct 110 --T-GA-A-TAT------GAAG--G-CTTTGTAGAAGAAGA--ATTTGG--G--TATGTC 149 Query 194 CGACTATGGTGAAGTACAAGA-G--GAAGACGAGGAGGAAGAGGAGGAAGAAGATTCCGA 250 || | |||| |||| | |||| | ||||| || |||||||| || |||||||||||||| Sbjct 150 CG-CCATGGAGAAGAAGAAGACGAAGAAGAAGAAGAGGAAGAAGACGAAGAAGATTCCGA 208 Query 251 ACGCCAAACCAGGGAATACATCGATGTCCTAGACTCACCTGTTAGGGTTTCACAGAACGA 310 | |||||||||||||||| |||||| | |||| |||||| ||||||||||||||||||| Sbjct 209 AAGCCAAACCAGGGAATATATCGATTTTGTAGAGTCACCTATTAGGGTTTCACAGAACGA 268 Query 311 GAGTGAAGGGATA-GAGAATCAGAAT-AGGTCACAAGGTGTTTGTTCATCGTCTTCCGGA 368 ||||| || || | ||||||||| || ||||||||||||||||| ||||||||||| ||| Sbjct 269 GAGTGGAGAGA-ACGAGAATCAG-ATAAGGTCACAAGGTGTTTGCTCATCGTCTTCAGGA 326 Query 369 TCGCAGGAGGATGTCGAATGGAAACAAGGTGACACTGAGGGATTGTCTTGTTCTATCTGT 428 ||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| Sbjct 327 TCGCAGGAGGATGTCGAATGGAAACCCGGCGACACTGAGGGATTGTCTTGTTCGATCTGT 386 Query 429 ATGGAAGTTTGGACCAGCGGTGGCCAACACCAAGTCTGTTGTCTTCCCTGTGGACACTTG 488 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 387 ATGGAAGTTTGGACCAGCGGTGGCCAACACCAAGTCTGTTGTCTTCCCTGTGGACACTTG 446 Query 489 TATGGATATTCCTGCATCAACAAGTGGTTTCAGCAGCGACGAAGTGGAGGG-AAGTGTCC 547 ||||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| Sbjct 447 TATGGATTTTCCTGCATCAACAAGTGGTTTCAGCAGCGACGAAGTGG-GGGCAAGTGTCC 505 Query 548 CCTGTGCAACAAAATATGTAGCTTGAGAGATGTCCGGAAAATCTATGCATCACGGGTTGC 607 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 506 CCTGTGCAACAAAACATGTAGCTTGAGAGATGTCCGGAAAATCTATGCATCACGGGTTGC 565 Query 608 TGCAGTAGATGATGAAGCACACAAGAGAATCTTATTTCTGGAGGCCAAGTTAAGGTCAAT 667 ||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 566 TGCAGTAGATGATGAAGCACACAAGAGAATCTTATTTTTGGAGGCCAAGTTAAGTTCAAT 625 Query 668 TGAACAGAAGACTGCGAGTTGGAGTAACAAAGAAGTTCAATGGAAAATAACTGAAGCTGA 727 ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| || Sbjct 626 TGAACAGAAGACTGCGAGTTGGAGTAACAAAGAAGCTCAATGGAAAAAAATTGAAGCAGA 685 Query 728 GCTACGATTAGAAGTTACTAAGCTGAAGAAGAAAATAGCTAATATGGAAAGTACGACTAA 787 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 686 GCTACAATTAGAAGTTAATAAGCTGAAGAAGAAAATAGCTAATATGGAAAGTACGACTAA 745 Query 788 GGGTTCGCAAAGCCAGTCTAATGTGGCTTCTCAGGAGAAATATATACCTGCTCATAATAT 847 |||| |||| ||||||||||||| |||||||||||||||||||||| ||| ||||||||| Sbjct 746 GGGTGCGCAGAGCCAGTCTAATGCGGCTTCTCAGGAGAAATATATATCTGGTCATAATAT 805 Query 848 CTACCAAGAGCATCATGGACAGTCACCTTCTTGCAGCTTCAGACATCAGGGAGATCTGCT 907 ||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| ||||| Sbjct 806 CTACCAAAAGCATCATGGACAGTCACCTTATTGCAGCTTCAGGCATCAGGGAGAACTGCT 865 Query 908 AATAAACGGTGGCCGTATATTTGACATAGATGGTGGTAGACAAATATTATTATATG-CCC 966 ||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| Sbjct 866 AATTAACGGTGGCCGTATATTTGACATAGATGGTGGTAGACAAATATTATTAT-TGGCCC 924 Query 967 GTAGGCTCTCAGGCGTTGGTGGAACGTTTGTGCTTACGCAAATGAGCCTACATTCGCCTT 1026 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 925 GTAGGCTCCCAGGCGTTGGTGGAACGTTTGTGCTTACGCAAATGAGCCTACATTCGTCGG 984 Query 1027 GTGAGATTGATGATATTTTGTTGCCTCGTACCACTAGAGCAATTAAAGATCTTCACCTTT 1086 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 985 GTGAGATTGATGATATTTTGTTGCCTCCTACCACTAGAGCAATTAAAGATCTTCACCTTT 1044 Query 1087 CCCCTCACAATAATGGGCTTGCAGTATTTGGGTCTCTAGGaaaaaaaTTATCTGTTATAA 1146 ||||||||| ||| |||||||| |||||||| |||||||| ||||| ||||| ||||||| Sbjct 1045 CCCCTCACAGTAACGGGCTTGCGGTATTTGGTTCTCTAGGGAAAAAGTTATCAGTTATAA 1104 Query 1147 GCTTGGAGAGCCACAATACTGTCTTATCTTATGATCTACCGGCTGCACCTTGGTCTTGCT 1206 |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| Sbjct 1105 GCTTGGAGAGCCACAACACTGTCTTATCTTATGATCTACCGGCTGCATCTTGGTCTTGCT 1164 Query 1207 CGTGGGATCTCAAAAGCTCTCACCATATTTATGCTGGACTACAAAATGGAATGGTTTTGA 1266 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1165 CGTGGGATCTCAACAGCTCTCACCATATTTATGCTGGACTACAAAATGGAATGGTTTTGG 1224 Query 1267 TATTTGACATGCGTCAAACCACGGGACCTTTCGCATCGATGACAGGCTTAACAACCAATC 1326 ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 1225 TATTTGACATGCGTCAAACCACGGGACCTTTTGCATCGATGACGGGCTTAACAACCAATC 1284 Query 1327 CAGTTCATACTGTCCATCATCTCTCTGGCAATTCCACTCCAACTTCTGATGTCCGTACCC 1386 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1285 CAGTTCATACTATCCATCATCTCTCTGGCAATTCCACTCCAACTTCTGATGTTCGTACCC 1344 Query 1387 TCTTATCTGCTTCTTCCATCGGGCTGTGTCAGTGGAACATTAGTGGTAGCGAGGGAAGCC 1446 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1345 TCTTATCTGCTTCTTCCATCGGGCTGTGTCAGTGGAACATTAGTGGCAGCGAGGGAAGCC 1404 Query 1447 CATCATTAGTTTCGGAAACGGGAAACCCAGGTGTATGCATATCCTCCTCGTACTGTCCCC 1506 |||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 1405 CATCATTAGTTTGGGAAACGGGAAACCCAGGAATTTGCATATCCTCCTCGTACTGTCCCC 1464 Query 1507 GCAGCAATCATATAGTAGCTTCTTATAGACCAAGAGTTGGATCATCTGATGATACAGTCC 1566 ||||| |||||||||| |||||||||||||| ||||||||||||||||| |||||||||| Sbjct 1465 GCAGCGATCATATAGTGGCTTCTTATAGACCGAGAGTTGGATCATCTGAGGATACAGTCC 1524 Query 1567 CGACTCAGCCCTCATTGACTCAAACAGGAGTCAGTAATAGTAATAGTAATGGTGTAGATG 1626 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct 1525 CGACTCAGCCCTCATTGACTCAAACAGGAGCCAATAATAGTAATAGTAATGGTGTAGATG 1584 Query 1627 GATTTCATGTTTGTCACAAGAGAAGAGGTGTTGATTCGTATTACCAGAAACTATCCTCCA 1686 |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1585 GATTTCATGTTTGTCATAAGAGAAGAGGTGTTGATTCGTATTACCAGAAACTTTCCTCCA 1644 Query 1687 CACAAGCTATTGTAGATCCCATCCGTTTGCCAAGAACAGCGATTATAGACTTTGGTGGGG 1746 ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1645 CACAAGCTATTGTTGATCCCATCCGTTTGCCGAGAACAGCGATTATAGACTTTGGTGGAG 1704 Query 1747 AAAGGAAACAACTTTTTGCATCTTGTGACGAGTCCACTCGGGAGCTCATCTTGCAAGATC 1806 |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 1705 AAAGGAAACAACTTTTTGCATCTTGTGACGAGTCCACTCGCAATCTCATCTTGCAAGATC 1764 Query 1807 CTTCGACTTTTACTATTTCTCAACGGTTGCCATTGTCAAGTCATCTTCCGCTTCAAGATG 1866 ||||||||||||| || |||||| ||| ||||||||||||||||||| ||| |||||| Sbjct 1765 CTTCGACTTTTACCATCACTCAACTGTTCCCATTGTCAAGTCATCTTCTGCTGCAAGATC 1824 Query 1867 TGAAATACTG-TCACGTCAATGGTTCGGATCTGCTCGGTCTCTTAACGGATGATAGATTG 1925 |||||||| | | ||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 1825 TGAAATAC-GCTGACGTCAATGGTTCGGGTCTGCTCGGTCTCTTAACAGATGATAGATTG 1883 Query 1926 CAGATTCTTAGGAACGAATCTCCATGAAGATTAAAAAAGATTGATAGTCTTGCAAGGATG 1985 ||| |||||||||||||||| |||||||||| |||||||||||||||||||||| ||||| Sbjct 1884 CAGCTTCTTAGGAACGAATCGCCATGAAGATGAAAAAAGATTGATAGTCTTGCAGGGATG 1943 Query 1986 GTGTTTGTTGAAGAGAAAACATGTATGTAAA-GCGGCTAACTAGTCTATCTATCT-T-TT 2042 ||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| | || Sbjct 1944 GTGTTTGTTGAAGAGCAAACATGTATGTAAAAGCGGCTAACTTGTCTATCTATCTATCTT 2003 Query 2043 --GTAATCTGGAGATGCTAT 2060 |||||||||||||||||| Sbjct 2004 TTGTAATCTGGAGATGCTAT 2023 > Ahg349657 jgi|Araly1|349657|fgenesh1_pg.C_scaffold_6000250 Length=1524 Score = 680 bits (368), Expect = 0.0 Identities = 615/731 (84%), Gaps = 29/731 (4%) Strand=Plus/Plus Query 846 ATCTACCAAGAGCATCATGGACAGT-CACCTTCTTGCAGCTTCAGACATCAGGGAGATCT 904 ||||| ||||| | ||||||||| | ||| |||| |||||| | |||| ||||||| | Sbjct 466 ATCTATCAAGAACGTCATGGACA-TGAACCCTCTTACAGCTTTAAACATAAGGGAGAAGT 524 Query 905 GCTAATAAACGGTGGCCGTATATTTGACATAGATGGTGGTAGACAAATAT-TATTA-TAT 962 | || | || ||||| |||||||| |||||||||||||||||||| || | | ||| || Sbjct 525 GTTAGTTAATGGTGGTCGTATATTCGACATAGATGGTGGTAGACAGAT-TCTGTTATTA- 582 Query 963 GCCCGTAGGCTCTCAGGC-GTTGGTGGAACGTTTGTGCTTACGCAAATGAGCCTACATTC 1021 |||||||||||||||||| | ||||||||||||||| ||||||||||||| | ||||||| Sbjct 583 GCCCGTAGGCTCTCAGGCAG-TGGTGGAACGTTTGTACTTACGCAAATGAACTTACATTC 641 Query 1022 GCCTTGTGAGATT---GATGATATTTTGTTGCCTCGTACCACTAGAGCAATTAAAGATCT 1078 | |||||||| |||||||||||||||||||||||||||||||| ||||||||||| Sbjct 642 G---GGTGAGATTGAAGATGATATTTTGTTGCCTCGTACCACTAGAGCTATTAAAGATCT 698 Query 1079 TCACCTTTCCCCTCACAATAATGGGCTTGCAGTATTTGGGT-CTCTAGGaaaaaaaTTAT 1137 || ||||||||||||||||| |||||||| |||||||| | ||||||| ||||| |||| Sbjct 699 TCGTCTTTCCCCTCACAATAACGGGCTTGCGGTATTTGG-TACTCTAGGGAAAAAGTTAT 757 Query 1138 CTGTTATAAGCTTGGAGAGCCACAATACTGTCTTATCTTATGATC-T--ACCGGCTGCAC 1194 | || ||||||||||| || ||||| ||||||||||||||||||| | ||| ||||||| Sbjct 758 CAGTCATAAGCTTGGATAGTCACAACACTGTCTTATCTTATGATCATCTACCAGCTGCAC 817 Query 1195 CTTGGTCTTGCTCGTGGGATCTCAA-AAGCTCTCACCATATTTATGCTGGACTACAAAAT 1253 |||||||||| || ||||||||||| || | ||||||| |||||||||||||||| ||| Sbjct 818 CTTGGTCTTGTTCTTGGGATCTCAACAAT-TGTCACCATGTTTATGCTGGACTACAGAAT 876 Query 1254 GGAATGGTTTT-GATATTTGACATGCGTCAAACCACGGGACCTTTCGCATCGATGACAGG 1312 ||||||||||| | |||||||||||||||||||||| |||||||| |||||| || | || Sbjct 877 GGAATGGTTTTAG-TATTTGACATGCGTCAAACCACAGGACCTTTGGCATCGTTGGCTGG 935 Query 1313 CTTAACAACCAATCCAGTTCATACTGTCCATCATCTCTCTGGC-AATTCCACTCCAACTT 1371 | |||||| |||||| ||||||| | | || |||||||||| | |||||||||||||||| Sbjct 936 CGTAACAAGCAATCCGGTTCATAGTATACACCATCTCTCTG-CTAATTCCACTCCAACTT 994 Query 1372 CTGATGTCCGTACCCTCTTATCTGCTTCTTCCATCGGG-CTGTGTCAGTGGAACATTAGT 1430 ||||||||||| | |||||||| |||||||||| |||| ||||||||||||||||| ||| Sbjct 995 CTGATGTCCGTGCGCTCTTATCCGCTTCTTCCA-CGGGGCTGTGTCAGTGGAACATCAGT 1053 Query 1431 GGTAGCGAGGGAAGCCCATCATTAGTTTCGGAAACGGGAAACCCAGGTGTATGCATAT-C 1489 || || |||||| | || | || ||||| | || |||||| ||| | ||||| | | Sbjct 1054 GGCAGTGAGGGATGGTCAACTTTGGTTTCTGTTACAAGAAACCTAGGAATTTGCAT-TGC 1112 Query 1490 CTCCTCGTACTGTCCCCGCAGCAATCATATAGTAGCTTCTTATAGACCAAGAGTTGGATC 1549 ||||||||| ||||| |||||||||||| | || || ||||||| || ||||||| ||| Sbjct 1113 CTCCTCGTATTGTCCTCGCAGCAATCATGTGGTTGCCTCTTATAAACGGAGAGTTGAATC 1172 Query 1550 ATCTGATGATA 1560 ||||| |||| Sbjct 1173 TTCTGAGGATA 1183 Score = 387 bits (209), Expect = 2e-106 Identities = 305/350 (87%), Gaps = 12/350 (3%) Strand=Plus/Plus Query 1609 ATAGTAATGGTGTAGATGGATTTCATGTTTGTCACAAGAGAAGAGGTGTTGATTCGTATT 1668 |||||||||||||||| |||||||||||||||| ||||| |||||||| || ||| |||| Sbjct 1181 ATAGTAATGGTGTAGAAGGATTTCATGTTTGTCTCAAGAAAAGAGGTGATGGTTCTTATT 1240 Query 1669 AC-CAGAAACTA-TCCTCCACACAAGCTATTGTAGATCCCATCCGTTTGCCAAGAACAGC 1726 | ||||||| | || ||||||||| |||| |||||| ||||| ||||||||||||||| Sbjct 1241 -CTCAGAAAC-AGTCATCCACACAACCTATAGTAGATTCCATCGGTTTGCCAAGAACAGA 1298 Query 1727 GATTATAGACTTTGGTGGGGAAAGGAAACAACTTTTTGCATCTTGTGACGAGTCCACTCG 1786 ||||||||||||||| ||||||| ||||||||||||||||| ||| ||||||||||| Sbjct 1299 GATTATAGACTTTGGCAAGGAAAGGTCACAACTTTTTGCATCTTATGAAGAGTCCACTCG 1358 Query 1787 GGAGCTCATCTTGCAAGATCCTTCGACTTTTACTATTTCTCAACG-GTTGCCATTGTCAA 1845 |||||||||||||||||||||| | ||||| || | |||||||| ||| ||||||||| Sbjct 1359 TGAGCTCATCTTGCAAGATCCTTGGTCTTTTGCTGTCTCTCAACGCTTTG-CATTGTCAA 1417 Query 1846 GTCATCTTCCGCTTCAAGATGTGAAATACTG-TCACGTCAATGGTTC-GGATCTGCTCGG 1903 ||||||||||||||||||| ||||||||| | | || ||||||| || || ||||||||| Sbjct 1418 GTCATCTTCCGCTTCAAGACGTGAAATAC-GCTAACCTCAATGGATCAGG-TCTGCTCGG 1475 Query 1904 TCTCTTAACGGATGATAGATTGCAGATTCTTAGGAA-CGAATCTCCATGA 1952 ||||||||| ||||||||||||||| ||||||| || |||||| |||||| Sbjct 1476 TCTCTTAACCGATGATAGATTGCAGTTTCTTAG-AAGCGAATCGCCATGA 1524 Score = 200 bits (108), Expect = 3e-50 Identities = 159/184 (86%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 417 TGTTCTATCTGTATGGAAGTTTGGACCAGCGGTGGCCAACACCAAGTCTGTTGTCTTCCC 476 ||||| |||||||||||||||||||||| ||||||| |||| ||||||| |||||||||| Sbjct 172 TGTTCGATCTGTATGGAAGTTTGGACCAACGGTGGCGAACATCAAGTCTCTTGTCTTCCC 231 Query 477 TGTGGACACTTGTATGGATATTCCTGCATCAACAAGTGGTTTCAGCAGCGACGAAGTGGA 536 ||||||||||||||||||| ||| ||||||||||||||||| ||||| |||| |||| | Sbjct 232 TGTGGACACTTGTATGGATTTTCTTGCATCAACAAGTGGTTACAGCATCGACCAAGTTCA 291 Query 537 GGGAAGTGTCCCCTGTGCAACAAAATATGTAGCTTGAGAGATGTCCG-GAAAATCTATGC 595 || |||||||| | ||||||| | ||||||||||| ||||||| | |||||| || | Sbjct 292 GGAAAGTGTCCTCAATGCAACAGAGCATGTAGCTTGAAAGATGTC-GTGAAAATTTACGG 350 Query 596 ATCA 599 |||| Sbjct 351 ATCA 354 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80408507195 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5