BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03450.1
Length=2137
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487121 jgi|Araly1|487121|fgenesh2_kg.6__255__AT5G03450.1 2837 0.0
Ahg349657 jgi|Araly1|349657|fgenesh1_pg.C_scaffold_6000250 680 0.0
> Ahg487121 jgi|Araly1|487121|fgenesh2_kg.6__255__AT5G03450.1
Length=2023
Score = 2837 bits (1536), Expect = 0.0
Identities = 1894/2060 (92%), Gaps = 52/2060 (3%)
Strand=Plus/Plus
Query 16 CTTCTTCTCTTCCGAAATCTGATACAGTAACAGAAACGAACCTAATGCCGCCTCGCCGGA 75
||||||||| |||||| |||| | | ||||||||||||||||||||||||||||||
Sbjct 1 CTTCTTCTCCTCCGAATTCTG----A-T-ACAGAAACGAACCTAATGCCGCCTCGCCGGC 54
Query 76 GTTACCCCTTCAGTGGTCACGGAGGTACAATTGCACG-ATTCATTGAATTTGGGGAAGCA 134
|||||||||||||||||| ||||| || ||||||||| ||| ||||||||| | || |
Sbjct 55 GTTACCCCTTCAGTGGTCCCGGAGATATAATTGCACGAATT-ATTGAATTT---G-AGGA 109
Query 135 TTTGGACACTATGGagaagaagaagacgaagaagaggaagacgaagaggaagCATATGT- 193
| || | ||| |||| | | | ||| ||||| | || | |||||
Sbjct 110 --T-GA-A-TAT------GAAG--G-CTTTGTAGAAGAAGA--ATTTGG--G--TATGTC 149
Query 194 CGACTATGGTGAAGTACAAGA-G--GAAGACGAGGAGGAAGAGGAGGAAGAAGATTCCGA 250
|| | |||| |||| | |||| | ||||| || |||||||| || ||||||||||||||
Sbjct 150 CG-CCATGGAGAAGAAGAAGACGAAGAAGAAGAAGAGGAAGAAGACGAAGAAGATTCCGA 208
Query 251 ACGCCAAACCAGGGAATACATCGATGTCCTAGACTCACCTGTTAGGGTTTCACAGAACGA 310
| |||||||||||||||| |||||| | |||| |||||| |||||||||||||||||||
Sbjct 209 AAGCCAAACCAGGGAATATATCGATTTTGTAGAGTCACCTATTAGGGTTTCACAGAACGA 268
Query 311 GAGTGAAGGGATA-GAGAATCAGAAT-AGGTCACAAGGTGTTTGTTCATCGTCTTCCGGA 368
||||| || || | ||||||||| || ||||||||||||||||| ||||||||||| |||
Sbjct 269 GAGTGGAGAGA-ACGAGAATCAG-ATAAGGTCACAAGGTGTTTGCTCATCGTCTTCAGGA 326
Query 369 TCGCAGGAGGATGTCGAATGGAAACAAGGTGACACTGAGGGATTGTCTTGTTCTATCTGT 428
||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 327 TCGCAGGAGGATGTCGAATGGAAACCCGGCGACACTGAGGGATTGTCTTGTTCGATCTGT 386
Query 429 ATGGAAGTTTGGACCAGCGGTGGCCAACACCAAGTCTGTTGTCTTCCCTGTGGACACTTG 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 ATGGAAGTTTGGACCAGCGGTGGCCAACACCAAGTCTGTTGTCTTCCCTGTGGACACTTG 446
Query 489 TATGGATATTCCTGCATCAACAAGTGGTTTCAGCAGCGACGAAGTGGAGGG-AAGTGTCC 547
||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 447 TATGGATTTTCCTGCATCAACAAGTGGTTTCAGCAGCGACGAAGTGG-GGGCAAGTGTCC 505
Query 548 CCTGTGCAACAAAATATGTAGCTTGAGAGATGTCCGGAAAATCTATGCATCACGGGTTGC 607
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 506 CCTGTGCAACAAAACATGTAGCTTGAGAGATGTCCGGAAAATCTATGCATCACGGGTTGC 565
Query 608 TGCAGTAGATGATGAAGCACACAAGAGAATCTTATTTCTGGAGGCCAAGTTAAGGTCAAT 667
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 566 TGCAGTAGATGATGAAGCACACAAGAGAATCTTATTTTTGGAGGCCAAGTTAAGTTCAAT 625
Query 668 TGAACAGAAGACTGCGAGTTGGAGTAACAAAGAAGTTCAATGGAAAATAACTGAAGCTGA 727
||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||
Sbjct 626 TGAACAGAAGACTGCGAGTTGGAGTAACAAAGAAGCTCAATGGAAAAAAATTGAAGCAGA 685
Query 728 GCTACGATTAGAAGTTACTAAGCTGAAGAAGAAAATAGCTAATATGGAAAGTACGACTAA 787
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 GCTACAATTAGAAGTTAATAAGCTGAAGAAGAAAATAGCTAATATGGAAAGTACGACTAA 745
Query 788 GGGTTCGCAAAGCCAGTCTAATGTGGCTTCTCAGGAGAAATATATACCTGCTCATAATAT 847
|||| |||| ||||||||||||| |||||||||||||||||||||| ||| |||||||||
Sbjct 746 GGGTGCGCAGAGCCAGTCTAATGCGGCTTCTCAGGAGAAATATATATCTGGTCATAATAT 805
Query 848 CTACCAAGAGCATCATGGACAGTCACCTTCTTGCAGCTTCAGACATCAGGGAGATCTGCT 907
||||||| ||||||||||||||||||||| |||||||||||| ||||||||||| |||||
Sbjct 806 CTACCAAAAGCATCATGGACAGTCACCTTATTGCAGCTTCAGGCATCAGGGAGAACTGCT 865
Query 908 AATAAACGGTGGCCGTATATTTGACATAGATGGTGGTAGACAAATATTATTATATG-CCC 966
||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 866 AATTAACGGTGGCCGTATATTTGACATAGATGGTGGTAGACAAATATTATTAT-TGGCCC 924
Query 967 GTAGGCTCTCAGGCGTTGGTGGAACGTTTGTGCTTACGCAAATGAGCCTACATTCGCCTT 1026
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 925 GTAGGCTCCCAGGCGTTGGTGGAACGTTTGTGCTTACGCAAATGAGCCTACATTCGTCGG 984
Query 1027 GTGAGATTGATGATATTTTGTTGCCTCGTACCACTAGAGCAATTAAAGATCTTCACCTTT 1086
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 985 GTGAGATTGATGATATTTTGTTGCCTCCTACCACTAGAGCAATTAAAGATCTTCACCTTT 1044
Query 1087 CCCCTCACAATAATGGGCTTGCAGTATTTGGGTCTCTAGGaaaaaaaTTATCTGTTATAA 1146
||||||||| ||| |||||||| |||||||| |||||||| ||||| ||||| |||||||
Sbjct 1045 CCCCTCACAGTAACGGGCTTGCGGTATTTGGTTCTCTAGGGAAAAAGTTATCAGTTATAA 1104
Query 1147 GCTTGGAGAGCCACAATACTGTCTTATCTTATGATCTACCGGCTGCACCTTGGTCTTGCT 1206
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1105 GCTTGGAGAGCCACAACACTGTCTTATCTTATGATCTACCGGCTGCATCTTGGTCTTGCT 1164
Query 1207 CGTGGGATCTCAAAAGCTCTCACCATATTTATGCTGGACTACAAAATGGAATGGTTTTGA 1266
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 CGTGGGATCTCAACAGCTCTCACCATATTTATGCTGGACTACAAAATGGAATGGTTTTGG 1224
Query 1267 TATTTGACATGCGTCAAACCACGGGACCTTTCGCATCGATGACAGGCTTAACAACCAATC 1326
||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct 1225 TATTTGACATGCGTCAAACCACGGGACCTTTTGCATCGATGACGGGCTTAACAACCAATC 1284
Query 1327 CAGTTCATACTGTCCATCATCTCTCTGGCAATTCCACTCCAACTTCTGATGTCCGTACCC 1386
||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1285 CAGTTCATACTATCCATCATCTCTCTGGCAATTCCACTCCAACTTCTGATGTTCGTACCC 1344
Query 1387 TCTTATCTGCTTCTTCCATCGGGCTGTGTCAGTGGAACATTAGTGGTAGCGAGGGAAGCC 1446
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1345 TCTTATCTGCTTCTTCCATCGGGCTGTGTCAGTGGAACATTAGTGGCAGCGAGGGAAGCC 1404
Query 1447 CATCATTAGTTTCGGAAACGGGAAACCCAGGTGTATGCATATCCTCCTCGTACTGTCCCC 1506
|||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 1405 CATCATTAGTTTGGGAAACGGGAAACCCAGGAATTTGCATATCCTCCTCGTACTGTCCCC 1464
Query 1507 GCAGCAATCATATAGTAGCTTCTTATAGACCAAGAGTTGGATCATCTGATGATACAGTCC 1566
||||| |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1465 GCAGCGATCATATAGTGGCTTCTTATAGACCGAGAGTTGGATCATCTGAGGATACAGTCC 1524
Query 1567 CGACTCAGCCCTCATTGACTCAAACAGGAGTCAGTAATAGTAATAGTAATGGTGTAGATG 1626
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1525 CGACTCAGCCCTCATTGACTCAAACAGGAGCCAATAATAGTAATAGTAATGGTGTAGATG 1584
Query 1627 GATTTCATGTTTGTCACAAGAGAAGAGGTGTTGATTCGTATTACCAGAAACTATCCTCCA 1686
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1585 GATTTCATGTTTGTCATAAGAGAAGAGGTGTTGATTCGTATTACCAGAAACTTTCCTCCA 1644
Query 1687 CACAAGCTATTGTAGATCCCATCCGTTTGCCAAGAACAGCGATTATAGACTTTGGTGGGG 1746
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1645 CACAAGCTATTGTTGATCCCATCCGTTTGCCGAGAACAGCGATTATAGACTTTGGTGGAG 1704
Query 1747 AAAGGAAACAACTTTTTGCATCTTGTGACGAGTCCACTCGGGAGCTCATCTTGCAAGATC 1806
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 1705 AAAGGAAACAACTTTTTGCATCTTGTGACGAGTCCACTCGCAATCTCATCTTGCAAGATC 1764
Query 1807 CTTCGACTTTTACTATTTCTCAACGGTTGCCATTGTCAAGTCATCTTCCGCTTCAAGATG 1866
||||||||||||| || |||||| ||| ||||||||||||||||||| ||| ||||||
Sbjct 1765 CTTCGACTTTTACCATCACTCAACTGTTCCCATTGTCAAGTCATCTTCTGCTGCAAGATC 1824
Query 1867 TGAAATACTG-TCACGTCAATGGTTCGGATCTGCTCGGTCTCTTAACGGATGATAGATTG 1925
|||||||| | | ||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 1825 TGAAATAC-GCTGACGTCAATGGTTCGGGTCTGCTCGGTCTCTTAACAGATGATAGATTG 1883
Query 1926 CAGATTCTTAGGAACGAATCTCCATGAAGATTAAAAAAGATTGATAGTCTTGCAAGGATG 1985
||| |||||||||||||||| |||||||||| |||||||||||||||||||||| |||||
Sbjct 1884 CAGCTTCTTAGGAACGAATCGCCATGAAGATGAAAAAAGATTGATAGTCTTGCAGGGATG 1943
Query 1986 GTGTTTGTTGAAGAGAAAACATGTATGTAAA-GCGGCTAACTAGTCTATCTATCT-T-TT 2042
||||||||||||||| ||||||||||||||| |||||||||| |||||||||||| | ||
Sbjct 1944 GTGTTTGTTGAAGAGCAAACATGTATGTAAAAGCGGCTAACTTGTCTATCTATCTATCTT 2003
Query 2043 --GTAATCTGGAGATGCTAT 2060
||||||||||||||||||
Sbjct 2004 TTGTAATCTGGAGATGCTAT 2023
> Ahg349657 jgi|Araly1|349657|fgenesh1_pg.C_scaffold_6000250
Length=1524
Score = 680 bits (368), Expect = 0.0
Identities = 615/731 (84%), Gaps = 29/731 (4%)
Strand=Plus/Plus
Query 846 ATCTACCAAGAGCATCATGGACAGT-CACCTTCTTGCAGCTTCAGACATCAGGGAGATCT 904
||||| ||||| | ||||||||| | ||| |||| |||||| | |||| ||||||| |
Sbjct 466 ATCTATCAAGAACGTCATGGACA-TGAACCCTCTTACAGCTTTAAACATAAGGGAGAAGT 524
Query 905 GCTAATAAACGGTGGCCGTATATTTGACATAGATGGTGGTAGACAAATAT-TATTA-TAT 962
| || | || ||||| |||||||| |||||||||||||||||||| || | | ||| ||
Sbjct 525 GTTAGTTAATGGTGGTCGTATATTCGACATAGATGGTGGTAGACAGAT-TCTGTTATTA- 582
Query 963 GCCCGTAGGCTCTCAGGC-GTTGGTGGAACGTTTGTGCTTACGCAAATGAGCCTACATTC 1021
|||||||||||||||||| | ||||||||||||||| ||||||||||||| | |||||||
Sbjct 583 GCCCGTAGGCTCTCAGGCAG-TGGTGGAACGTTTGTACTTACGCAAATGAACTTACATTC 641
Query 1022 GCCTTGTGAGATT---GATGATATTTTGTTGCCTCGTACCACTAGAGCAATTAAAGATCT 1078
| |||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 642 G---GGTGAGATTGAAGATGATATTTTGTTGCCTCGTACCACTAGAGCTATTAAAGATCT 698
Query 1079 TCACCTTTCCCCTCACAATAATGGGCTTGCAGTATTTGGGT-CTCTAGGaaaaaaaTTAT 1137
|| ||||||||||||||||| |||||||| |||||||| | ||||||| ||||| ||||
Sbjct 699 TCGTCTTTCCCCTCACAATAACGGGCTTGCGGTATTTGG-TACTCTAGGGAAAAAGTTAT 757
Query 1138 CTGTTATAAGCTTGGAGAGCCACAATACTGTCTTATCTTATGATC-T--ACCGGCTGCAC 1194
| || ||||||||||| || ||||| ||||||||||||||||||| | ||| |||||||
Sbjct 758 CAGTCATAAGCTTGGATAGTCACAACACTGTCTTATCTTATGATCATCTACCAGCTGCAC 817
Query 1195 CTTGGTCTTGCTCGTGGGATCTCAA-AAGCTCTCACCATATTTATGCTGGACTACAAAAT 1253
|||||||||| || ||||||||||| || | ||||||| |||||||||||||||| |||
Sbjct 818 CTTGGTCTTGTTCTTGGGATCTCAACAAT-TGTCACCATGTTTATGCTGGACTACAGAAT 876
Query 1254 GGAATGGTTTT-GATATTTGACATGCGTCAAACCACGGGACCTTTCGCATCGATGACAGG 1312
||||||||||| | |||||||||||||||||||||| |||||||| |||||| || | ||
Sbjct 877 GGAATGGTTTTAG-TATTTGACATGCGTCAAACCACAGGACCTTTGGCATCGTTGGCTGG 935
Query 1313 CTTAACAACCAATCCAGTTCATACTGTCCATCATCTCTCTGGC-AATTCCACTCCAACTT 1371
| |||||| |||||| ||||||| | | || |||||||||| | ||||||||||||||||
Sbjct 936 CGTAACAAGCAATCCGGTTCATAGTATACACCATCTCTCTG-CTAATTCCACTCCAACTT 994
Query 1372 CTGATGTCCGTACCCTCTTATCTGCTTCTTCCATCGGG-CTGTGTCAGTGGAACATTAGT 1430
||||||||||| | |||||||| |||||||||| |||| ||||||||||||||||| |||
Sbjct 995 CTGATGTCCGTGCGCTCTTATCCGCTTCTTCCA-CGGGGCTGTGTCAGTGGAACATCAGT 1053
Query 1431 GGTAGCGAGGGAAGCCCATCATTAGTTTCGGAAACGGGAAACCCAGGTGTATGCATAT-C 1489
|| || |||||| | || | || ||||| | || |||||| ||| | ||||| | |
Sbjct 1054 GGCAGTGAGGGATGGTCAACTTTGGTTTCTGTTACAAGAAACCTAGGAATTTGCAT-TGC 1112
Query 1490 CTCCTCGTACTGTCCCCGCAGCAATCATATAGTAGCTTCTTATAGACCAAGAGTTGGATC 1549
||||||||| ||||| |||||||||||| | || || ||||||| || ||||||| |||
Sbjct 1113 CTCCTCGTATTGTCCTCGCAGCAATCATGTGGTTGCCTCTTATAAACGGAGAGTTGAATC 1172
Query 1550 ATCTGATGATA 1560
||||| ||||
Sbjct 1173 TTCTGAGGATA 1183
Score = 387 bits (209), Expect = 2e-106
Identities = 305/350 (87%), Gaps = 12/350 (3%)
Strand=Plus/Plus
Query 1609 ATAGTAATGGTGTAGATGGATTTCATGTTTGTCACAAGAGAAGAGGTGTTGATTCGTATT 1668
|||||||||||||||| |||||||||||||||| ||||| |||||||| || ||| ||||
Sbjct 1181 ATAGTAATGGTGTAGAAGGATTTCATGTTTGTCTCAAGAAAAGAGGTGATGGTTCTTATT 1240
Query 1669 AC-CAGAAACTA-TCCTCCACACAAGCTATTGTAGATCCCATCCGTTTGCCAAGAACAGC 1726
| ||||||| | || ||||||||| |||| |||||| ||||| |||||||||||||||
Sbjct 1241 -CTCAGAAAC-AGTCATCCACACAACCTATAGTAGATTCCATCGGTTTGCCAAGAACAGA 1298
Query 1727 GATTATAGACTTTGGTGGGGAAAGGAAACAACTTTTTGCATCTTGTGACGAGTCCACTCG 1786
||||||||||||||| ||||||| ||||||||||||||||| ||| |||||||||||
Sbjct 1299 GATTATAGACTTTGGCAAGGAAAGGTCACAACTTTTTGCATCTTATGAAGAGTCCACTCG 1358
Query 1787 GGAGCTCATCTTGCAAGATCCTTCGACTTTTACTATTTCTCAACG-GTTGCCATTGTCAA 1845
|||||||||||||||||||||| | ||||| || | |||||||| ||| |||||||||
Sbjct 1359 TGAGCTCATCTTGCAAGATCCTTGGTCTTTTGCTGTCTCTCAACGCTTTG-CATTGTCAA 1417
Query 1846 GTCATCTTCCGCTTCAAGATGTGAAATACTG-TCACGTCAATGGTTC-GGATCTGCTCGG 1903
||||||||||||||||||| ||||||||| | | || ||||||| || || |||||||||
Sbjct 1418 GTCATCTTCCGCTTCAAGACGTGAAATAC-GCTAACCTCAATGGATCAGG-TCTGCTCGG 1475
Query 1904 TCTCTTAACGGATGATAGATTGCAGATTCTTAGGAA-CGAATCTCCATGA 1952
||||||||| ||||||||||||||| ||||||| || |||||| ||||||
Sbjct 1476 TCTCTTAACCGATGATAGATTGCAGTTTCTTAG-AAGCGAATCGCCATGA 1524
Score = 200 bits (108), Expect = 3e-50
Identities = 159/184 (86%), Gaps = 2/184 (1%)
Strand=Plus/Plus
Query 417 TGTTCTATCTGTATGGAAGTTTGGACCAGCGGTGGCCAACACCAAGTCTGTTGTCTTCCC 476
||||| |||||||||||||||||||||| ||||||| |||| ||||||| ||||||||||
Sbjct 172 TGTTCGATCTGTATGGAAGTTTGGACCAACGGTGGCGAACATCAAGTCTCTTGTCTTCCC 231
Query 477 TGTGGACACTTGTATGGATATTCCTGCATCAACAAGTGGTTTCAGCAGCGACGAAGTGGA 536
||||||||||||||||||| ||| ||||||||||||||||| ||||| |||| |||| |
Sbjct 232 TGTGGACACTTGTATGGATTTTCTTGCATCAACAAGTGGTTACAGCATCGACCAAGTTCA 291
Query 537 GGGAAGTGTCCCCTGTGCAACAAAATATGTAGCTTGAGAGATGTCCG-GAAAATCTATGC 595
|| |||||||| | ||||||| | ||||||||||| ||||||| | |||||| || |
Sbjct 292 GGAAAGTGTCCTCAATGCAACAGAGCATGTAGCTTGAAAGATGTC-GTGAAAATTTACGG 350
Query 596 ATCA 599
||||
Sbjct 351 ATCA 354
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80408507195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5