BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03455.1

Length=633
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487122 jgi|Araly1|487122|fgenesh2_kg.6__256__AT5G03455.1          880    0.0  


> Ahg487122 jgi|Araly1|487122|fgenesh2_kg.6__256__AT5G03455.1
Length=581

 Score =  880 bits (476),  Expect = 0.0
 Identities = 515/534 (96%), Gaps = 1/534 (0%)
 Strand=Plus/Plus

Query  29   GAGATATGGGGAGAAGCATATTTTCCTTTTTCACTAAGAAGaaaaaaaTGGCGATGGCGA  88
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GAGATATGGGGAGAAGCATATTTTCCTTTTTCACTAAGAAGAAAAAAATGGCGATGGCGA  60

Query  89   GAAGCATCTCTTACATCACCTCTACTCAGCTTCTCCCTCTTCATCGTCGTCCCAACATCG  148
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  61   GAAGCATCTCTTACATCACCTCTACGCAGCTTCTCCCTCTTCATCGTCGTCCCAACATCG  120

Query  149  CCATCATCGATGTCAGGGATGAAGAGAGGAATTATGACGGGCATATAGCTGGATCGCTAC  208
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  121  CCATCATCGATGTCAGGGATGAAGAGAGGAATTATGACGGGCATATAGCTGGGTCGCTAC  180

Query  209  ACTATGCGAGTGGCTCGTTTGATGACAAGATCTCACATCTTGTTCAAAATGTCAAGGACA  268
            ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  181  ACTATGCAAGTGGCTCGTTTGATGACAAGATCTCTCATCTTGTTCAAAATGTCAAGGACA  240

Query  269  AAGACACACTTGTCTTCCATTGTGCCTTGAGCCAGGTTCGTGGCCCTACTTGTGCGAGAA  328
            ||||||||||||||||||||||||| |||||||||||||| || || |||||||| ||||
Sbjct  241  AAGACACACTTGTCTTCCATTGTGCTTTGAGCCAGGTTCGGGGTCCAACTTGTGCAAGAA  300

Query  329  GGCTCGTGAATTATCTTGATGAGAAGAAAGAAGATACTGGAATCAAAAACATCATGATCT  388
            |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GGCTCGTGAATTATCTCGATGAGAAGAAAGAAGATACTGGAATCAAAAACATCATGATCT  360

Query  389  TGGAACGCGGCTTTAACGGTTGGGAAGCTTCTGGAAAACCGGTCTGCCGCTGTGCAGAGG  448
            |||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct  361  TGGAACGCGGCTTTAATGGCTGGGAAGCTTCTGGAAAACCGGTCTGCCGCTGTGCAGACG  420

Query  449  TTCCTTGCAAGGGCGATTGCGCCTAAACCCTACTAAACCATATTGGGACCTAATTGATGT  508
            |||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
Sbjct  421  TTCCTTGCAAAGGCGATTGTGCCTAAACCCTACTTAACCATATTGGGACCTAATTGATCT  480

Query  509  TCCACATTGTCATGTACTAAAGTTGAATGAAGATT-ATCATAAATAATCTCTTA  561
            |||||||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct  481  TCCACATTGTCATGTATTAAAGTTGAATGAAGATTTATCATAAATAATCTCTTA  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23178733536


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5