BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03460.1

Length=549
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg487123 jgi|Araly1|487123|fgenesh2_kg.6__257__AT5G03460.1          636    0.0  


> Ahg487123 jgi|Araly1|487123|fgenesh2_kg.6__257__AT5G03460.1
Length=403

 Score =  636 bits (344),  Expect = 0.0
 Identities = 388/408 (95%), Gaps = 7/408 (2%)
 Strand=Plus/Plus

Query  114  GTTTGCGTTATGTGTTTGGTGCCTCTGTTCCTCGTCCCGCTCATCAATTTAATGCCTCGA  173
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    GTTTGCGTTATGTGTTTGGTGCCTCTGTTCCTCGTCCCGCTCATCAATTTAATGCCTCGA  60

Query  174  ATCATCGATTATTTCATGGCTAAATTGTACGCGTGGCTCGGATGGGAGTACAGGAAGCCA  233
            |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct  61   ATCATCGATTATTTCATGGCCAAATTGTATGCGTGGCTCGGATGGGAGTACAGGAAGCCA  120

Query  234  GCGAGAGTTCCTCCAGCTTGTCCTTTCAAGCCAGTTGCTAAAAACGACAACGCCACCAAA  293
            || |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  GCTAGAGTTCCTCCAGCGTGTCCTTTCAAGCCGGTTGCTAAAAACGACAACGCCACCAAA  180

Query  294  GTGGGTGCGGAAACTGGAACTGAAGGTACAGAAACAATAGCTAAACCTGGCGTTGTAGAG  353
            |||| ||||||||||||||||||||||||||||||||||||||||||||  || |  |||
Sbjct  181  GTGGCTGCGGAAACTGGAACTGAAGGTACAGAAACAATAGCTAAACCTGTTGTAGCGGAG  240

Query  354  GAGACGGGTGGTATTAAGCAGGATTGAGGCCGAGTCTTTTCTTCAATAAAACCTTTTGTA  413
            |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct  241  GAGACGGGTGGTATTAAGCAGGATTGAGGCTGAGTCTTTTCTTCAATAAAACCTTT-GTA  299

Query  414  TTTGTGGATAT--GTTTTGGATAAGAGAAGAAGCTGGAAGTTGAAATTACCTGATGTGAT  471
            |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  TTTGTGGATATATGTTTTGGATAAGAGAAGAAGCTGGAAGTTGAAATTACCTGATGTGAT  359

Query  472  ACTGATAATGAATGATGTACGTTGAAAATGCTACGTAACAGATAATTT  519
            ||||||||||| | ||  |||||||||||||| |||||||||||||||
Sbjct  360  ACTGATAATGA-T-AT--ACGTTGAAAATGCTGCGTAACAGATAATTT  403



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20031684225


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5