BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03480.1
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892258 jgi|Araly1|892258|Al_scaffold_0006_254 569 1e-161
Ahg892255 jgi|Araly1|892255|Al_scaffold_0006_251 538 3e-152
Ahg905423 jgi|Araly1|905423|Al_scaffold_0003_2551 486 1e-136
Ahg892253 jgi|Araly1|892253|Al_scaffold_0006_249 346 2e-94
Ahg897235 jgi|Araly1|897235|Al_scaffold_0005_1201 185 4e-46
Ahg892227 jgi|Araly1|892227|Al_scaffold_0006_223 148 6e-35
Ahg897421 jgi|Araly1|897421|Al_scaffold_0005_1387 102 4e-21
Ahg892422 jgi|Araly1|892422|Al_scaffold_0006_418 62.1 7e-09
Ahg487293 jgi|Araly1|487293|fgenesh2_kg.6__427__AT5G05430.1 62.1 7e-09
> Ahg892258 jgi|Araly1|892258|Al_scaffold_0006_254
Length=747
Score = 569 bits (308), Expect = 1e-161
Identities = 527/626 (84%), Gaps = 42/626 (7%)
Strand=Plus/Plus
Query 336 CACGACGATCTCCGTTGAGGGATATGACACTTCGCTTCAAAAGTATCTTCTCGAGCTCAT 395
||||||| | |||||||||||||||||||||| ||||| |||||||| |||| | ||| |
Sbjct 132 CACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGT 191
Query 396 CTTGGAAAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTA 455
|||||||||||||||| ||||||||||||||| | | || ||||||| ||||||||||
Sbjct 192 GTTGGAAAAACATTTCGCTTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTT 251
Query 456 TGAAAGGGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGA 515
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 252 TGAAAGGGGTATCCTCAAGAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGA 311
Query 516 CAAGGCATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC--- 572
||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 312 AAAGGCATTGCAACTTAGTGGAACTGACGTCGGAGGATGGACTGCTATCGTTAAGCCTGC 371
Query 573 A---TC-C-GAAA-TATTCTATG-ATAATTCTTCGCGTGCT---CCT-G-----CAACTA 616
| || | |||| ||||| ||| || || ||| | |||| ||| | | ||
Sbjct 372 ACCGTCGCAGAAAGTATTC-ATGGATGATCCTTGGTATGCTGGTCCTAGGTGTGCTGCTG 430
Query 617 CTCCTGAGGCAT-CCAAAATACACAGGTTCCGTGTTACGGGATATGACGCTTCGCTTCCT 675
|||| | || || |||||||||||||| |||| ||||| ||||||||| |||||||||||
Sbjct 431 CTCCCGCGG-ATACCAAAATACACAGGATCCGCGTTACCGGATATGACACTTCGCTTCCT 489
Query 676 GAGATTGATATCCAGATGGCTCTGTGTAAACATTTCTCTTCATGTGGAGA-GATCTGGCA 734
||||||||||| ||||| || ||||||||||||||||| ||||||||| | | ||| | |
Sbjct 490 GAGATTGATATGCAGATCGCGCTGTGTAAACATTTCTCCTCATGTGGATACG-TCTCGAA 548
Query 735 AGTTACAGTTCTCTCTAG---TACAGCTTTCGTTTCTCTTAGAGGAGAAAGATGTGTAGA 791
||||| |||||||||||| | |||||||| | | ||||| ||||||||||||||||||
Sbjct 549 AGTTATAGTTCTCTCTAGCGGTGCAGCTTTCCTGTGTCTTAAAGGAGAAAGATGTGTAGA 608
Query 792 CAAGGCGCTGGAACTAAGTGGATGTAACATGGGAGAAAGGACTCTTGTAGTTAATGAACC 851
||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||
Sbjct 609 CAAGGCGCTGGAACTAAGTCGATGTAACATGGGAGGAAGGACTCTTGTAGTT---GAACC 665
Query 852 TGTTGTGCCGCAACCCGA-ACTCTTAAAAAGAAA-AAGG--G-TACGCCACTGCACTACC 906
||||||||||| |||||| | || |||||| ||| |||| | | |||| ||||||||
Sbjct 666 TGTTGTGCCGCGACCCGATA-TCCTAAAAA-AAAGAAGGCCGCT-CGCC--TGCACTACT 720
Query 907 ACTGGCTATA-TGCCCCCAGGTACAT 931
|||||||| | | | |||| ||||||
Sbjct 721 ACTGGCTACACT-CTCCCAAGTACAT 745
Score = 261 bits (141), Expect = 7e-69
Identities = 211/244 (86%), Gaps = 8/244 (3%)
Strand=Plus/Plus
Query 67 AGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTTAAG-GAGTATCCTCTCAGGCT 125
|||||| | ||| |||||| ||||||||||||| |||| | |||||||||||| ||
Sbjct 130 AGCACGACGGTTTCCGTTGAGGGATATGACACTTGGCTT-CGAAAGTATCCTCTCAAACT 188
Query 126 GGCGTT-GACAAAACATTTCGCTTCATGCGGAGAGATCACACAA-ATTTATGTTCCAAGA 183
| ||| || ||||||||||||||||||||||||||||||| || |||||||| || | |
Sbjct 189 CGTGTTGGA-AAAACATTTCGCTTCATGCGGAGAGATCACA-AATATTTATGTACCCACA 246
Query 184 GACTTTAAAAAGAAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAAGGTGC 242
|||||| ||| | |||||||||||||| | |||||||| ||||| |||||||||||||
Sbjct 247 GACTTTGAAAGGGGTATCCTCAAGAGTGT-TGCCTTCATGAGGATCGAGGGAGAAGGTGC 305
Query 243 CGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATCGTTAA 302
|||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 306 CGAAGAAAAGGCATTGCAACTTAGTGGAACTGACGTCGGAGGATGGACTGCTATCGTTAA 365
Query 303 GCCT 306
||||
Sbjct 366 GCCT 369
> Ahg892255 jgi|Araly1|892255|Al_scaffold_0006_251
Length=789
Score = 538 bits (291), Expect = 3e-152
Identities = 521/625 (83%), Gaps = 44/625 (7%)
Strand=Plus/Plus
Query 336 CACGACGATCTCCGTTGAGGGATATGACACTTCGCTTCAAAAGTATCTTCTCGAGCTCAT 395
||||||||| |||||||||||||||||||||| ||||| |||||||| |||| | ||| |
Sbjct 93 CACGACGATTTCCGTTGAGGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGT 152
Query 396 CTTGGAAAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTA 455
|||||||||||||||| ||||||||||||||| | | || ||||||| ||||||||||
Sbjct 153 GTTGGAAAAACATTTCGCTTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTT 212
Query 456 TGAAAGGGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGA 515
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 213 TGAAAGGGGTATCCTCAAGAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGA 272
Query 516 CAAGGCATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC--- 572
||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct 273 AAAGGCATTGCAACTTAGTGGAACTGACGTCGGAGGATGGACTGCTATCGTTAAGCCTGC 332
Query 573 A---TC-C-GAAA-TATTCTATG-ATAATTCTTCGCGTGCT---CCT-G-----CAACTA 616
| || | |||| ||||| ||| || || ||| | |||| ||| | | ||
Sbjct 333 ACCGTCGCAGAAAGTATTC-ATGGATGATCCTTGGTATGCTGGTCCTAGGTGTGCTGCTG 391
Query 617 CTCCTGAGGCAT-CCAAAATACACAGGTTCCGTGTTACGGGATATGACGCTTCGCTTCCT 675
|||| | | || |||||| ||||| | |||| ||||| ||||||||| |||||||||||
Sbjct 392 CTCCCGCCG-ATACCAAAACACACATGATCCGCGTTACCGGATATGACACTTCGCTTCCT 450
Query 676 GAGATTGATATCCAGATGGCTCTGTGTAAACATTTCTCTTCATGTGGAG-AGATCTGGCA 734
|||||||||| ||||| || |||| |||||||||||| ||||||||| | |||||| |
Sbjct 451 AAGATTGATATGCAGATCGCGCTGTATAAACATTTCTCCTCATGTGGATCA-ATCTGGAA 509
Query 735 AGTTACAGTTCTCTCTAG---TACAGCTTTCGTTTCTCTTAGA-GGAGAAAGATGTGTAG 790
||||| |||||||||||| | ||||||| ||| |||| || ||||||||||||||||
Sbjct 510 AGTTATAGTTCTCTCTAGCGGTGCAGCTTTTATTTATCTT-GAAGGAGAAAGATGTGTAG 568
Query 791 ACAAGGCGCTGGAACTAAGTGGATGTAACATGGGAGAAAGGACTCTTGTAGTTAATGAAC 850
||||||||||||||||||||||| | |||||||||| | ||||||||||||| ||||
Sbjct 569 ACAAGGCGCTGGAACTAAGTGGACGGAACATGGGAGGATCGACTCTTGTAGTT---GAAC 625
Query 851 CTGTTGTGCCGCAACCCGA-ACTCTTAAAAAGAAA-AAGG--G-TACGCCACTGCACTAC 905
|||||||||||| |||||| | ||||||||| ||| |||| | | |||| ||||||||
Sbjct 626 CTGTTGTGCCGCGACCCGATA-TCTTAAAAA-AAAGAAGGCCGCT-CGCC--TGCACTAC 680
Query 906 CACTGGCTATA-TGCCCCCAGGTAC 929
|||||||||| | | |||| ||||
Sbjct 681 TACTGGCTATACT-CTCCCAAGTAC 704
Score = 268 bits (145), Expect = 4e-71
Identities = 215/248 (87%), Gaps = 8/248 (3%)
Strand=Plus/Plus
Query 63 CACTAGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTTAAG-GAGTATCCTCTCA 121
||| |||||| | |||| |||||| ||||||||||||| |||| | ||||||||||||
Sbjct 87 CACCAGCACGACGATTTCCGTTGAGGGATATGACACTTGGCTT-CGAAAGTATCCTCTCA 145
Query 122 GGCTGGCGTT-GACAAAACATTTCGCTTCATGCGGAGAGATCACACAA-ATTTATGTTCC 179
|| | ||| || ||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 146 AACTCGTGTTGGA-AAAACATTTCGCTTCATGCGGAGAGATCACA-AATATTTATGTACC 203
Query 180 AAGAGACTTTAAAAAGAAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAAG 238
| ||||||| ||| | |||||||||||||| | |||||||| ||||| |||||||||
Sbjct 204 CACAGACTTTGAAAGGGGTATCCTCAAGAGTGT-TGCCTTCATGAGGATCGAGGGAGAAG 262
Query 239 GTGCCGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATCG 298
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 263 GTGCCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACGTCGGAGGATGGACTGCTATCG 322
Query 299 TTAAGCCT 306
||||||||
Sbjct 323 TTAAGCCT 330
> Ahg905423 jgi|Araly1|905423|Al_scaffold_0003_2551
Length=960
Score = 486 bits (263), Expect = 1e-136
Identities = 502/611 (82%), Gaps = 42/611 (7%)
Strand=Plus/Plus
Query 336 CACGACGATCTCCGTTGAGGGATATGACACTTCGCTTCAAAAGTATCTTCTCGAGCTCAT 395
||||||| | |||||||||||||||||||||| ||||| |||||||| |||| | ||| |
Sbjct 132 CACGACGGTTTCCGTTGAGGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGT 191
Query 396 CTTGGAAAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTA 455
|||||||||||||||| ||||||||||||||| | | || ||||||| ||||||||||
Sbjct 192 GTTGGAAAAACATTTCGCTTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTT 251
Query 456 TGAAAGGGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGA 515
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 252 TGAAAGGGGTATCCTCAAGAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGA 311
Query 516 CAAGGCATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC--- 572
||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||
Sbjct 312 AAAGGCATTGCAACTTAGTGGAACTGACATCGGAGGATGGACTGCTATCGTTAAGCCTGC 371
Query 573 ATCC-G--A-AA--TATTCTATG-ATAATTCTTCGCGTGCT---CCT-G-----CAACTA 616
| || | | || ||||| ||| || || || | |||| ||| | | ||
Sbjct 372 ACCCTGGCAGAAAGTATTC-ATGGATGATCCTAGGTATGCTGGTCCTAGGTGTGCTGCTG 430
Query 617 CTCCTGAGGCAT-CCAAAATACACAGGTTCCGTGTTACGGGATATGACGCTTCGCTTCCT 675
|||| | | || |||||| ||||| | |||| |||| ||||||||| |||||||||||
Sbjct 431 CTCCCGCCG-ATACCAAAACACACATGATCCGCATTACCGGATATGACACTTCGCTTCCT 489
Query 676 GAGATTGATATCCAGATGGCTCTGTGTAAACATTTCTCTTCATGTGGAG-AGATCTGGCA 734
|||||||||| ||||| || |||| |||||||||||| ||||||||| | |||||| |
Sbjct 490 AAGATTGATATGCAGATCGCGCTGTATAAACATTTCTCCTCATGTGGATCA-ATCTGGAA 548
Query 735 AGTTACAGTTCTCTCTAG---TACAGCTTTCGTTTCTCTTAGA-GGAGAAAGATGTGTAG 790
||||| ||||||| || | ||||||| ||| |||| || ||||||||||||||||
Sbjct 549 AGTTATAGTTCTCAAAAGCGGTGCAGCTTTTATTTATCTT-GAAGGAGAAAGATGTGTAG 607
Query 791 ACAAGGCGCTGGAACTAAGTGGATGTAACATGGGAGAAAGGACTCTTGTAGTTAATGAAC 850
||||||||||||||||||||||| | |||||||||| | ||||||||||||| ||||
Sbjct 608 ACAAGGCGCTGGAACTAAGTGGACGGAACATGGGAGGATCGACTCTTGTAGTT---GAAC 664
Query 851 CTGTTGTGCCGCAACCCGA-ACTCTTAAAAAGAAA-AAGG--G-TACGCCACTGCACTAC 905
|||||||||||| |||||| | || |||||| ||| |||| | | |||| ||||||||
Sbjct 665 CTGTTGTGCCGCGACCCGATA-TCCTAAAAA-AAAGAAGGCCGCT-CGCC--TGCACTAC 719
Query 906 CACTGGCTATA 916
||||||||||
Sbjct 720 TACTGGCTATA 730
Score = 255 bits (138), Expect = 3e-67
Identities = 210/244 (86%), Gaps = 8/244 (3%)
Strand=Plus/Plus
Query 67 AGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTTAAG-GAGTATCCTCTCAGGCT 125
|||||| | ||| |||||| ||||||||||||| |||| | |||||||||||| ||
Sbjct 130 AGCACGACGGTTTCCGTTGAGGGATATGACACTTGGCTT-CGAAAGTATCCTCTCAAACT 188
Query 126 GGCGTT-GACAAAACATTTCGCTTCATGCGGAGAGATCACACAA-ATTTATGTTCCAAGA 183
| ||| || ||||||||||||||||||||||||||||||| || |||||||| || | |
Sbjct 189 CGTGTTGGA-AAAACATTTCGCTTCATGCGGAGAGATCACA-AATATTTATGTACCCACA 246
Query 184 GACTTTAAAAAGAAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAAGGTGC 242
|||||| ||| | |||||||||||||| | |||||||| ||||| |||||||||||||
Sbjct 247 GACTTTGAAAGGGGTATCCTCAAGAGTGT-TGCCTTCATGAGGATCGAGGGAGAAGGTGC 305
Query 243 CGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATCGTTAA 302
|||||| ||||||||||||||||||||||||||| | ||||||||||||| |||||||||
Sbjct 306 CGAAGAAAAGGCATTGCAACTTAGTGGAACTGACATCGGAGGATGGACTGCTATCGTTAA 365
Query 303 GCCT 306
||||
Sbjct 366 GCCT 369
> Ahg892253 jgi|Araly1|892253|Al_scaffold_0006_249
Length=486
Score = 346 bits (187), Expect = 2e-94
Identities = 279/321 (87%), Gaps = 15/321 (5%)
Strand=Plus/Plus
Query 1 ATGGAAGAATCCGCCATTAAACGTCTGAAGTCGCTGGAATTGAACGATA---GT---GA- 53
||||||||||| ||||| ||| ||||||| | ||||||||| ||||||| || ||
Sbjct 1 ATGGAAGAATCAGCCATCAAAGGTCTGAAATTGCTGGAATTCAACGATAGTGGTGCAGAC 60
Query 54 --T--AA---ACAGT-CCACTAGCACGGCTATTTGCGTTGAAGGATATGACACTTCGCTT 105
| || ||||| |||||| |||||||||| ||||||||||||| ||||| |||||
Sbjct 61 TCTCAAACTCACAGTAGCACTAGTACGGCTATTTCCGTTGAAGGATATAACACTACGCTT 120
Query 106 AAGGAGTATCCTCTCAGGCTGGCGTTGACAAAACATTTCGCTTCATGCGGAGAGATCACA 165
|||||||||||||||||||| || ||| ||||||||||||||||||||||| ||||||||
Sbjct 121 AAGGAGTATCCTCTCAGGCTCGCATTGGCAAAACATTTCGCTTCATGCGGAAAGATCACA 180
Query 166 CAAATTTATGTTCCAAGAGACTTTAAAAAGAAAATCCTCAAGAGTGTCTCCTTCATGTGG 225
|||||||||||||| |||||||||||||||||| |||||||||| | ||||||| | |||
Sbjct 181 CAAATTTATGTTCCTAGAGACTTTAAAAAGAAACTCCTCAAGAGAGCCTCCTTCGTTTGG 240
Query 226 ATCAAGGGAGAAGGTGCCGAAGACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGA 285
||| ||||||| | ||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 241 ATCGAGGGAGACGATGCCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACGTTGGAGGA 300
Query 286 TGGACTGTTATCGTTAAGCCT 306
||||||| |||||||||||||
Sbjct 301 TGGACTGCTATCGTTAAGCCT 321
Score = 198 bits (107), Expect = 5e-50
Identities = 192/232 (83%), Gaps = 10/232 (4%)
Strand=Plus/Plus
Query 346 TCCGTTGAGGGATATGACACTTCGCTTCAA-AAGTATCTTCTCGA-GCTCATC-TTGGAA 402
|||||||| |||||| ||||| ||||| || |||||| |||| | |||| | |||| |
Sbjct 94 TCCGTTGAAGGATATAACACTACGCTT-AAGGAGTATCCTCTC-AGGCTC-GCATTGGCA 150
Query 403 AAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTATGAAAGG 462
|||||||||| |||||||||| |||| | ||| |||||||||| | ||||| | ||| |
Sbjct 151 AAACATTTCGCTTCATGCGGAAAGATCACACAAATTTATGTTCCTAGAGACTTTAAAAAG 210
Query 463 GGTGTCCTCAAGAGTG-TTGCCTTC-TTGAGGATCGAGGGAGAAGGTGCCGAAGACAAGG 520
|||||||||| | | ||||| || ||||||||||||| | ||||||||| ||||
Sbjct 211 AAACTCCTCAAGAGAGCCT-CCTTCGTT-TGGATCGAGGGAGACGATGCCGAAGAAAAGG 268
Query 521 CATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC 572
||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 269 CATTGCAACTTAGTGGAACTGACGTTGGAGGATGGACTGCTATCGTTAAGCC 320
> Ahg897235 jgi|Araly1|897235|Al_scaffold_0005_1201
Length=369
Score = 185 bits (100), Expect = 4e-46
Identities = 144/165 (87%), Gaps = 4/165 (2%)
Strand=Plus/Plus
Query 130 TTGACAAAACATTTCGCTTCATGCGGAGAGATCACACAAATTTATGTTCCAAGAGACTTT 189
|||| |||||||||| ||||||||||| |||||| ||| || ||||||||||||||||||
Sbjct 37 TTGAGAAAACATTTCTCTTCATGCGGAAAGATCAAACATATCTATGTTCCAAGAGACTTT 96
Query 190 AAAAAG-AAAATCCTCAAGAGTGTCT-CCTTCATGTGGATCAAGGGAGAAGGTGCCGAAG 247
|||| | ||||||||| || | | |||||| |||| ||||||||||||||||||
Sbjct 97 -GAAAGTGGTACCCTCAAGAGAGT-TGCTTTCATGAGGATTGAGGGAGAAGGTGCCGAAG 154
Query 248 ACAAGGCATTGCAACTTAGTGGAACTGACGTGGGAGGATGGACTG 292
||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 155 ACAAGGCATTGGAACTTAGTGGAACTGACGTGGGAGGATGGACTG 199
Score = 182 bits (98), Expect = 5e-45
Identities = 138/158 (87%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 402 AAAACATTTCGATTCATGCGGAGAGATTAGACATGTTTATGTTCCCACAGACTATGAAAG 461
|||||||||| |||||||||| |||| | |||| | |||||||| | ||||| ||||||
Sbjct 42 AAAACATTTCTCTTCATGCGGAAAGATCAAACATATCTATGTTCCAAGAGACTTTGAAAG 101
Query 462 GGGTGTCCTCAAGAGTGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGACAAGGC 521
||| ||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||
Sbjct 102 TGGTACCCTCAAGAGAGTTGCTTTCATGAGGATTGAGGGAGAAGGTGCCGAAGACAAGGC 161
Query 522 ATTGCAACTTAGTGGAACTGACGTTGTAGGATGGACTG 559
|||| ||||||||||||||||||| | |||||||||||
Sbjct 162 ATTGGAACTTAGTGGAACTGACGTGGGAGGATGGACTG 199
> Ahg892227 jgi|Araly1|892227|Al_scaffold_0006_223
Length=579
Score = 148 bits (80), Expect = 6e-35
Identities = 94/101 (93%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 215 CCTTCATGTGGATCAAGGGAGAAGGTGCCGAAGACAAGGCATTGCAACTTAGTGGAACTG 274
|||||||| ||||| ||||||||| || |||||| |||||||||||||||||||||||||
Sbjct 227 CCTTCATGAGGATCGAGGGAGAAGATGTCGAAGAAAAGGCATTGCAACTTAGTGGAACTG 286
Query 275 ACGTGGGAGGATGGACTGTTATCGTTAAGCCTAAACCCAAA 315
|||| ||||||||||||| ||||||||||||||||||||||
Sbjct 287 ACGTTGGAGGATGGACTGCTATCGTTAAGCCTAAACCCAAA 327
Score = 145 bits (78), Expect = 7e-34
Identities = 90/96 (94%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 477 TGTTGCCTTCTTGAGGATCGAGGGAGAAGGTGCCGAAGACAAGGCATTGCAACTTAGTGG 536
|||||||||| |||||||||||||||||| || |||||| ||||||||||||||||||||
Sbjct 222 TGTTGCCTTCATGAGGATCGAGGGAGAAGATGTCGAAGAAAAGGCATTGCAACTTAGTGG 281
Query 537 AACTGACGTTGTAGGATGGACTGTTATCGTTAAGCC 572
||||||||||| ||||||||||| ||||||||||||
Sbjct 282 AACTGACGTTGGAGGATGGACTGCTATCGTTAAGCC 317
> Ahg897421 jgi|Araly1|897421|Al_scaffold_0005_1387
Length=555
Score = 102 bits (55), Expect = 4e-21
Identities = 90/106 (85%), Gaps = 6/106 (6%)
Strand=Plus/Plus
Query 201 CCTCAAGAGTGTCT-CCTTCATGTGGA-TCAAGGGAGAAGGTGCCGAA-GACAAGGCATT 257
||||||||| || | |||||||| ||| | || |||||| |||| || || || |||||
Sbjct 123 CCTCAAGAGAGT-TGCCTTCATGAGGATTGAA-GGAGAAAATGCC-AATGAGAAAGCATT 179
Query 258 GCAACTTAGTGGAACTGACGTGGGAGGATGGACTGTTATCGTTAAG 303
| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 180 GGAACTTAGTGGAACTGACGTGGGAGGATGGACTGCAATCGTTAAG 225
> Ahg892422 jgi|Araly1|892422|Al_scaffold_0006_418
Length=1017
Score = 62.1 bits (33), Expect = 7e-09
Identities = 71/88 (81%), Gaps = 8/88 (9%)
Strand=Plus/Plus
Query 649 GTTACGGGATATGACGCTTCG-CTTCCTGA-GATTGATATCCAGATGGC-TCTGTGTA-A 704
||||||||||||||| || | |||||| ||| ||| || | | ||| | || | | |
Sbjct 55 GTTACGGGATATGACACTG-GTCTTCCTCTTGAT-GATGTCTACACGGCGT-TG-GCAGA 110
Query 705 ACATTTCTCTTCATGTGGAGAGATCTGG 732
||||||||||||||||||||||||||||
Sbjct 111 ACATTTCTCTTCATGTGGAGAGATCTGG 138
> Ahg487293 jgi|Araly1|487293|fgenesh2_kg.6__427__AT5G05430.1
Length=415
Score = 62.1 bits (33), Expect = 7e-09
Identities = 71/88 (81%), Gaps = 8/88 (9%)
Strand=Plus/Plus
Query 649 GTTACGGGATATGACGCTTCG-CTTCCTGA-GATTGATATCCAGATGGC-TCTGTGTA-A 704
||||||||||||||| || | |||||| ||| ||| || | | ||| | || | | |
Sbjct 19 GTTACGGGATATGACACTG-GTCTTCCTCTTGAT-GATGTCTACACGGCGT-TG-GCAGA 74
Query 705 ACATTTCTCTTCATGTGGAGAGATCTGG 732
||||||||||||||||||||||||||||
Sbjct 75 ACATTTCTCTTCATGTGGAGAGATCTGG 102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35873664897
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5