BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03490.1
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487125 jgi|Araly1|487125|fgenesh2_kg.6__259__AT5G03490.1 2135 0.0
Ahg923596 jgi|Araly1|923596|scaffold_104877.1 617 6e-176
Ahg480568 jgi|Araly1|480568|fgenesh2_kg.3__3269__AT2G16890.2 58.4 2e-07
> Ahg487125 jgi|Araly1|487125|fgenesh2_kg.6__259__AT5G03490.1
Length=1481
Score = 2135 bits (1156), Expect = 0.0
Identities = 1297/1367 (95%), Gaps = 2/1367 (0%)
Strand=Plus/Plus
Query 125 CGGAGAATTCAAAACCACCGCACATAGTGGTGTTTCCATTCCCAGCACAAGGCCACTTAC 184
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 CGGAGAATTCGAAACCACCGCACATAGTGGTGTTTCCATTCCCAGCACAAGGCCACTTAC 140
Query 185 TTCCTCTACTTGACTTAACTCACCAACTCTGCCTCCGTGGATTCAACGTCTCCGTCATCG 244
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 141 TTCCTCTACTTGACTTAACTCACCAACTCTGCCTCCGTGGAGTCAACGTCTCCGTCATCG 200
Query 245 TTACTCCCGGTAACCTTACTTAcctctctcctcttctctccgctcatccctcctccgtca 304
| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TCACTCCCGGAAACCTAACTTACCTCTCTCCTCTTCTCTCCGCTCATCCCTCCTCCGTCA 260
Query 305 cctccgtcgttttccctttccctcctcatccttcactctctcccGGCGTCGAAAACGTTA 364
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 261 CCTCCGTCGTTTTCCCTTTCCCTCCTCATCCTTCACTCTCTCCCGGCGTCGAAAACGTCA 320
Query 365 AAGACGTCGGAAATTCAGGAAATCTCCCGATCATGGCTTCTCTTCGTCAGCTACGAGAAC 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 321 AAGACGTCGGAAATTCAGGAAATCTCCCGATCATGGCTTCTCTTCGTCAGCTTCGAGATC 380
Query 425 CAATCATCAACTGGTTCCAATCTCATCCGAATCCGCCTATCGCTCTCATCTCCGATTTCT 484
|||||||| ||||||||| ||||||||| ||||| || ||||||||||||||||||||||
Sbjct 381 CAATCATCCACTGGTTCCGATCTCATCCTAATCCTCCGATCGCTCTCATCTCCGATTTCT 440
Query 485 TCCTCGGATGGACTCACGATCTCTGCAATCAAATCGGTATCCCCAGATTCGCTTTCTTCT 544
||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 441 TCCTCGGGTGGACTCACGATCTCTGCAATCAAATCAGTATCCCTAGATTCGCTTTCTTCT 500
Query 545 CCATCAGCTTCTTCTTAGTTTCCGTTCTTCAATTTTGCTTCGAGAACATCGATCTAATCA 604
|||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||
Sbjct 501 CCATCAGCTTCTTCTTAGTTTCCGTTCTCCATTTTTGCTTCGAAAACATCGATCTAATCA 560
Query 605 AATCAACGGATCCGATTCATCTCCTTGATCTTCCTCGCGCTCCGATTTTCAAAGAAGAGC 664
||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 561 AATCACCGGATCCGATTCATCTCCTGGATCTTCCTCGTGCTCCGATTTTCAAAGAAGAGC 620
Query 665 ATCTTCCGTCTATAGTCCGACGAAGTCTCCAAACTCCGTCACCGGATCTCGAATCAATCA 724
||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 621 ATCTTCCGTCTATAGTCCGACGAAGTCTCCAAACTCCGTCACCGGATATCGAAACAATCA 680
Query 725 AAGATTTCTCCATGAATTTGTTGAGCTACGGATCTGTTTTCAATTCTTCTGAGATTCTGG 784
|||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 681 AAGATTTCTCCAAGAATTTGTTGAGCTATGGATCTGTTTTCAATTCTTCTGAGATTCTTG 740
Query 785 AAGATGATTATCTTCAGTACGTGAAACAGAGGATGGGTCATGATCGGGTTTATGTTATTG 844
|||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 741 AAGATGATTATCTTGAGTACGTGAAACAGAGGATGGGTCATGATCGGGTTTTTGTAATTG 800
Query 845 GCCCGCTTTGTTCAATCGGGTCGGGTCTTAAATCGAATTCGGGTTCTGTAGACCCGAGTT 904
|||||||||||||||||||||| |||||||||||| |||| |||||| ||||||||||||
Sbjct 801 GCCCGCTTTGTTCAATCGGGTCAGGTCTTAAATCGGATTCAGGTTCTATAGACCCGAGTT 860
Query 905 TGCTGAGTTGGTTAGACGGATCCCCAAACGGGTCAGTTCTATACGTTTGTTTCGGAAGTC 964
|||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 861 TGCTAAGTTGGTTAGACGGATCCCCAAACCGGTCAGTGCTATACGTTTGTTTCGGAAGTC 920
Query 965 AAAAGGCGTTGACTAAAGACCAGTGTGATGCT-TTGGCTCTAGGCTTAGAGAAAAGCATG 1023
|||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||| ||
Sbjct 921 AAAAGGCGTTGACTAAAGACCAGTGTGATGCTCTTG-CTCTAGGCTTAGAAAAAAGCGTG 979
Query 1024 ACCCGGTTTGTTTGGGTGGTTAAGAAAGATCCGATACCCGACGGGTTTGAGGATCGGGTT 1083
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 ACTCGGTTTGTTTGGGTGGTTAAGAAAGATCCGATACCCGACGGGTTTGAGGATCGGGTT 1039
Query 1084 TCCGGAAGGGGATTGGTGGTAAGAGGATGGGTCTCCCAGCTGGCGGTGTTGCGACACGTG 1143
|| ||| ||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1040 TCTGGACGGGGATTGGTGGTTAGAGGATGGGTTTCCCAGCTGGCGGTCTTGCGACACGTG 1099
Query 1144 GCGGTTGGTGGATTTTTGAGCCATTGTGGATGGAACTCAGTGCTTGAAGGGATAACGAGT 1203
|| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1100 GCAGTTGGTGGATTTTTGAGCCATTGTGGATGGAACTCGGTGCTTGAAGCGATAACGAGT 1159
Query 1204 GGGGCTGTGATCTTGGGCTGGCCCATGGAGGCGGACCAGTTTGTGAACGCGAGGTTGCTT 1263
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1160 GGGGCTGTGATCTTGGGCTGGCCCATGGAGGCGGATCAGTTTGTGAACGCGAGGTTGCTT 1219
Query 1264 GTGGAGCATTTGGGTGTTGCGGTTAGGGTTTGCGAAGGTGGTGAAACTGTGCCTGACTCG 1323
| ||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| ||
Sbjct 1220 GCGGAGCATTTGGGTATTGCGGTTAGGGTTTGTGAAGGTGGTGAAACTGTACCTGACCCG 1279
Query 1324 GATGAGTTGGGTCGGGTCATAGCGGAAACGATGGGTGAGGGAGGACGCGAGGTGGCTGCT 1383
| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1280 GTTGAGCTGGGTCGGGTCATAGCGGAAACGATGAGTGAGGGAGGACGCGAGGTGGCTGCT 1339
Query 1384 CGGGCTGAGGAGATACGGCGGAAGACCGAGGCTGCCGTGACGGAGGCAAATGGAAGCTCC 1443
||||| ||||||||||||| ||||||||||| |||||||||||| |||||||||||||
Sbjct 1340 CGGGCGGAGGAGATACGGCAAAAGACCGAGGCCGCCGTGACGGAGACAAATGGAAGCTCT 1399
Query 1444 GTTGAAAATGTACAAAGACTTGTCAAAGAATTTGAAAAAGTCTAAAA 1490
||||| || ||||||||||||| |||||||||| ||||||||||||
Sbjct 1400 ATTGAAGATTTACAAAGACTTGTTAAAGAATTTGGAAAAGTCTAAAA 1446
Score = 69.4 bits (37), Expect = 7e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1529 AATATTTTTAGTGGGGATTTTGCAAATGTATGTACCA 1565
|||||||||||||||||||||||||||||||||||||
Sbjct 1445 AATATTTTTAGTGGGGATTTTGCAAATGTATGTACCA 1481
> Ahg923596 jgi|Araly1|923596|scaffold_104877.1
Length=1411
Score = 617 bits (334), Expect = 6e-176
Identities = 996/1301 (77%), Gaps = 103/1301 (8%)
Strand=Plus/Plus
Query 141 ACCGCACAT-AGTGGTGTTTCCAT-TCCCAGCACAAGGCCACTTACTTCCTCTACTTGAC 198
|||||| || | |||||||||||| | ||||||||||||||||| || ||||| || |||
Sbjct 62 ACCGCATATCA-TGGTGTTTCCATAT-CCAGCACAAGGCCACTTGCTCCCTCTTCTCGAC 119
Query 199 TTAACTCACCAACTCTGCCTCCGTGGATTCAAC-GTCTCCGTCATCGTTACTCCCGGTAA 257
|||||||| |||||||| || ||||| || || |||||| ||||||| ||||| ||
Sbjct 120 TTAACTCATCAACTCTGTCTTCGTGGCCTC-ACAGTCTCCATCATCGTCACTCCTAAAAA 178
Query 258 CCTTACTTAcctctctcctcttctctccgctcatccctcctccgtcacc-tccgtcgttt 316
|||| ||||||||||| |||||||||||| |||||| ||| |||| || | |||| ||
Sbjct 179 CCTTCCTTACCTCTCTTCTCTTCTCTCCGTTCATCCATCCGCCGTTTCCGT-CGTCACTT 237
Query 317 tccctttccctcctc-atcct-tcactctctcccGGCGTCGAAAACGTTAAAGACGTCGG 374
| ||||| ||||| | ||||| | | || || ||||||| ||||||||||||||| ||||
Sbjct 238 TACCTTTTCCTCC-CAATCCTATGA-TCCCTTCCGGCGTTGAAAACGTTAAAGACCTCGG 295
Query 375 AAATTCA-GGAAATCTCCC-GATCATGGCTTCTCTTCGTCAGCTACGAGAACCAATCATC 432
|| | ||||||| ||| ||| ||||||||||||||||| || ||||| || ||| ||
Sbjct 296 TGGTT-ACGGAAATC-CCCTGATGATGGCTTCTCTTCGTCATCTTCGAGAGCCTATCGTC 353
Query 433 AACTGGTTCCAA--TCTCATCCGAATCCGCCTATCGCTCTCATCTCCGATTTCTTCCTCG 490
|||||||| || |||||||| ||||| || |||||||||| || ||||||||||| |
Sbjct 354 AACTGGTT--AAGTTCTCATCCAAATCCACCGGTCGCTCTCATTTCTGATTTCTTCCTTG 411
Query 491 GATGGACTCACGATCTCTGCAATCAAATCGGTATCCC-CAGATTCGCTTTCTTCTCCATC 549
|||||||| | | | ||| | |||||||| | | || ||||||||| ||
Sbjct 412 GATGGACT-A--A-----G-GATC---TTGGTATCCCTC-GCTTTGCTTTCTTC-AGTTC 457
Query 550 AGCTTC-TTCTTAGTTTCCG-TTCTTCAATTTTGCT-TC-GAGAA-CATCGATCTAATCA 604
| | ||||||| || || ||| || |||||| | || || || | || |||| |
Sbjct 458 TGGAGCATTCTTAGCTT-CGATTC-TCCATTTTG-TCTCGGACAAGCCTC-ATCTCTTTG 513
Query 605 AATCAACGGATCCGAT-TCAT-CTCCT-TGATCTTCCTCGCGCTCC-GATTTTCA-AAGA 659
||||||| || || | || | | | ||||||||||| | || | |||| | ||
Sbjct 514 AATCAACTGAGCC--TGTC-TGTTTATCGGATCTTCCTCGTTCCCCTG-TTTTTAGAA-C 568
Query 660 AGAGCATCTTCCGTCTATAGTCCGACGAAGTCTCCAAACTCCGTCACCGGATCTCGAATC 719
||||||||| |||||| || ||| | ||||||| | | | || | ||||| |||
Sbjct 569 AGAGCATCTCCCGTCTTTAATCC--CTCAGTCTCC--A-T-CATCGCAAGATCTTGAAAG 622
Query 720 AATCAAAGATTTCT-CCATGAATTTGTT-GAGCTACGGATCTGTTTTCAATTCTTCTGAG 777
| ||||| | |||||||||| || ||| || || | | |||||||| ||| ||||
Sbjct 623 TGTAAAAGA-CAGTACCATGAATTT-TTCGAGTTATGGTTGTATTTTCAATACTTGTGAG 680
Query 778 AT-TCTGGAAGATGATTATC-TTCAGTACGTGAAACAG-AGGATGGGTCATG-ATCGGGT 833
| | ||||||| || || | | |||| ||||| ||| | | || || | | |||||||
Sbjct 681 -TGTTTGGAAGAAGAGTA-CATGGAGTATGTGAAGCAGAATG-TGAGTGA-GAATCGGGT 736
Query 834 -TTATGTTATTGGCCCGCTTTGTTCAATCGGGTCGGGTCTTAAATCGAATT-CGGGTTC- 890
|| || | |||| ||||||| ||||||||||| ||| || | ||| || | |
Sbjct 737 GTT-TGGTGTTGGTCCGCTTTCTTCAATCGGGTTAGGTAGGGAA--G-ATTCCGAATCCA 792
Query 891 -TGTAGAC-CCGA-G-TTTGCTGAGTTGGTTAGACGGATCCCCAAACGGGTCAGTTCTAT 946
||||||| | | | |||||||||||| | ||||||| ||| | || || || || |
Sbjct 793 ATGTAGACGCAAAGGCGTTGCTGAGTTGGCTCGACGGATGTCCAGATGGTTCTGTGCTTT 852
Query 947 ACGTTTGTTTCGGAAGTCAAAAGGCGTTGACTAAAGACCAGTGTGATGCTTTGGCTCTAG 1006
|| | || |||||||||||||||| ||| |||||||| |||||||||||| |||||||||
Sbjct 853 ACATCTGCTTCGGAAGTCAAAAGGTGTTAACTAAAGAACAGTGTGATGCTCTGGCTCTAG 912
Query 1007 G-CTTAGAGAAA-AGCATGACCCGGTTTGTTTGGGTGGTTAAGAAAGATCCGATACCCGA 1064
| ||| || ||| || ||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 913 GTCTT-GA-AAAGAGTATGACCCGGTTCGTTTGGGTGGTTAAGAAAGATCCGATACCTGA 970
Query 1065 CGGGTTTGAGGATCGGGTTTCCGGAAGGGGATTGGTGGTAAGAGGATGGGTCTCC-CA-G 1122
||||||||||||||| | | || | ||| || | || ||||| |||| |||| || |
Sbjct 971 TGGGTTTGAGGATCGGATCGCAGGTCGAGGAATGATTGTTAGAGGGTGGG-CTCCTCAAG 1029
Query 1123 CTGGCGGTGTTGCGACACGTGGCGGTTGGTGGATTTTTGAGCCATTGTGGATGGAACTCA 1182
|||| ||||| | || |||||||||||||| ||||| ||||| || |||||||||||
Sbjct 1030 -TGGCTATGTTGAGTCATGTGGCGGTTGGTGGGTTTTTAAGCCACTGCGGATGGAACTCG 1088
Query 1183 GTGCTTGAAGGGATAACGAGTGGGGCTGTGATCTTGGGCT-GGCCCATGGAGGCGGACCA 1241
||||| |||| || | ||||| | ||||||||| || |||||||||| || |||||
Sbjct 1089 GTGCTCGAAGCAATGGCTAGTGGAACAATGATCTTGG-CTTGGCCCATGGAAGCAGACCA 1147
Query 1242 GTTTGT-GAACGCGAGGTTGCTTGTGGAGCATTTGGGTGTTGCGGTTAGGGTTTGCGAAG 1300
|||||| || ||||||||||| ||||||||| ||||||| ||||| || | || ||||
Sbjct 1148 GTTTGTAGAT-GCGAGGTTGCTAGTGGAGCATATGGGTGTGGCGGTCAGTATATGTGAAG 1206
Query 1301 GTGGTGAA-ACTGTGCCTGACTCGGATGAGTTGGGTCGGGTCATAGCG-GAAACGATGGG 1358
| ||| || |||||||||| | || |||||||| |||||||||||| | ||||| |||||
Sbjct 1207 GGGGT-AAGACTGTGCCTGCCCCGCATGAGTTGAGTCGGGTCATAG-GTGAAACAATGGG 1264
Query 1359 TGAGGGA-GGACGCGAGGTG-GCTGCTCGGGCTGAGGAGAT 1397
|||| | |||||||||| | | |||||||||| |||||||
Sbjct 1265 TGAGC-ATGGACGCGAGGCGCG-TGCTCGGGCTAAGGAGAT 1303
> Ahg480568 jgi|Araly1|480568|fgenesh2_kg.3__3269__AT2G16890.2
Length=1637
Score = 58.4 bits (31), Expect = 2e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Plus
Query 1153 GGATTTTTGAGCCATTGTGGATGGAACTCAG 1183
|||||||||||||||||||||||||||||||
Sbjct 1122 GGATTTTTGAGCCATTGTGGATGGAACTCAG 1152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5