BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03495.1
Length=1290
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892256 jgi|Araly1|892256|Al_scaffold_0006_252 791 0.0
Ahg892258 jgi|Araly1|892258|Al_scaffold_0006_254 464 7e-130
Ahg892255 jgi|Araly1|892255|Al_scaffold_0006_251 451 5e-126
Ahg905423 jgi|Araly1|905423|Al_scaffold_0003_2551 435 5e-121
Ahg892253 jgi|Araly1|892253|Al_scaffold_0006_249 268 6e-71
Ahg916949 jgi|Araly1|916949|Al_scaffold_0008_1700 167 2e-40
Ahg892227 jgi|Araly1|892227|Al_scaffold_0006_223 137 2e-31
Ahg918673 jgi|Araly1|918673|Al_scaffold_0777_2 89.8 5e-17
Ahg911175 jgi|Araly1|911175|Al_scaffold_0001_1429 63.9 3e-09
> Ahg892256 jgi|Araly1|892256|Al_scaffold_0006_252
Length=684
Score = 791 bits (428), Expect = 0.0
Identities = 609/693 (88%), Gaps = 25/693 (4%)
Strand=Plus/Plus
Query 227 ATGGACGAATCCGCCATCAAAGGTATGAAATTGCTGCAATTGAACGAGATTGGTGCAAAC 286
|||||||||||||||||||||||| ||||||||||| |||||||||| | ||||||| |
Sbjct 1 ATGGACGAATCCGCCATCAAAGGTCTGAAATTGCTGGAATTGAACGATAGTGGTGCAGTC 60
Query 287 TCTCGAAAGCCCCGTATCCCTTGGACGAAGATTTCCGTGGAGGGATATGACACTAGGCTC 346
|||||||| || |||| ||||| ||||||||| |||||||||||||||||||||
Sbjct 61 TCTCGAAAACCGCGTA------AGACGACGATTTCCGTTGAGGGATATGACACTAGGCTC 114
Query 347 CGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATCACA 406
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||
Sbjct 115 CGTGAGTATACTCTCAAGCTCGCGTTGGAAAAACATTTCGCTTCATGCGGAAAGATTGCA 174
Query 407 -CATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAAGAGTGTCGCCTTCATGTG 465
| |||||||||||||||||||| | |||||||||| |||||||||||| ||||||||||
Sbjct 175 AC-TATTTATGTTCCCAGAGACTATAAAAGGGGTATTCTCAAGAGTGTCACCTTCATGTG 233
Query 466 TATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAGTGGAACTGACG-CGGGAG 524
||||| ||||| | || ||||||||||||||||| ||||||||||||||||| ||| ||
Sbjct 234 GATCAAGGGAGACGATGCCGAAGAAAAGGCATTGCAGCTTAGTGGAACTGACGTCGG-AG 292
Query 525 GATGGACTGCAATCGTTAAGCCTGCACTCTGGCAGAAAGAAATCATGGATCCTTGGCT-T 583
|||||||||| ||||||||||||||| || ||||||||| ||||||||||||||| | |
Sbjct 293 GATGGACTGCTCTCGTTAAGCCTGCACCCTCGCAGAAAGACATCATGGATCCTTGG-TGT 351
Query 584 CCTGGC-ATGC---CCAAACTTGAAACACACAGGGTCCGCGTTACGGGATATGACACTTG 639
|||| | |||| |||||| ||||||||| |||||||||||||| ||||||||||||||
Sbjct 352 CCTG-CTATGCTATCCAAACATGAAACACAGAGGGTCCGCGTTACCGGATATGACACTTG 410
Query 640 TG-TTCCTAAGATTGATATCCAGATGGCCTTGTGTGAACATTTCTCTTCATGTGGAGAGG 698
| ||||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 411 -GCTTCCTGAGATTGATATCCAGATTGCCTTGTGTGAACATTTCTCTTCCTGTGGAGAGG 469
Query 699 TCACGCAAGTTGTGGTTCTGCCTAGCGGTTCAGGTTCCATTTATCTTCAAGGAGAAAGAT 758
||||||||||| ||||||| ||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 470 TCACGCAAGTTATGGTTCTCCCTTGCGGTTCAGGTTCCATTTATCTTGAAGAAGAAAGAT 529
Query 759 GTGAGGACAAGGCGCTTCAACTAAATGGATGTAAAATGGGAGGAATGAATCTTGTAGTTG 818
|||| |||||||||||| |||||||||| |||||||||||||||||||||||||||||||
Sbjct 530 GTGAAGACAAGGCGCTTAAACTAAATGGGTGTAAAATGGGAGGAATGAATCTTGTAGTTG 589
Query 819 AATCTGTTTTGATA-GAACCCGAAGACCTaaaaaaa-GAAAAGGGCGCGCCATCATCACG 876
|| ||||| | || ||||||||| |||||||| |||| |||||| || | |||
Sbjct 590 AACCTGTTAAGGCGCGA-CCCGAAGACTTAAAAAAAAGAAAGGGGCGCCCC-TG--CACT 645
Query 877 CCTACTGGCCATACTGGCTATACGCCCTTAAGT 909
|||||||| |||||||||||| ||||||||||
Sbjct 646 ACTACTGGCTATACTGGCTATATGCCCTTAAGT 678
> Ahg892258 jgi|Araly1|892258|Al_scaffold_0006_254
Length=747
Score = 464 bits (251), Expect = 7e-130
Identities = 510/628 (81%), Gaps = 46/628 (7%)
Strand=Plus/Plus
Query 270 ACGAGATTGGTGCAAACTCTCGAAA-GCCCCGTATC-CCTTGGACGAAGATTTCCGTGGA 327
|||| | ||||||| |||||| ||| ||||||||| || | |||| | ||||||| ||
Sbjct 92 ACGATAGTGGTGCAGACTCTC-AAACTCCCCGTATCTCC-AGCACGACGGTTTCCGTTGA 149
Query 328 GGGATATGACACTAGGCTCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGC 387
||||||||||||| |||| || ||||| | |||| |||||||||||||||||||||||
Sbjct 150 GGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGC 209
Query 388 TTCATGCGGAAAGATCACACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAA 447
|||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 210 TTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTTTGAAAGGGGTATCCTCAA 269
Query 448 GAGTGTCGCCTTCATGTGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAG 507
|||||| ||||||||| | ||| | |||||||||| ||||||||||||||||| |||||
Sbjct 270 GAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGAAAAGGCATTGCAACTTAG 329
Query 508 TGGAACTGACG-CGGGAGGATGGACTGCAATCGTTAAGCCTGCACTC-TGGCAGAAAGAA 565
||||||||||| ||| |||||||||||| |||||||||||||||| | | |||||||| |
Sbjct 330 TGGAACTGACGTCGG-AGGATGGACTGCTATCGTTAAGCCTGCAC-CGTCGCAGAAAGTA 387
Query 566 ATCATGGAT---CCTTGG----CT--TCCT-GG----CA--TGC-CCA----A-ACTTGA 603
|||||||| |||||| || |||| || | ||| || | || |
Sbjct 388 TTCATGGATGATCCTTGGTATGCTGGTCCTAGGTGTGCTGCTGCTCCCGCGGATACCA-A 446
Query 604 AACACACAGGGTCCGCGTTACGGGATATGACACTT-GTGTTCCTAAGATTGATATCCAGA 662
|| ||||||| |||||||||| ||||||||||||| | ||||| |||||||||| ||||
Sbjct 447 AATACACAGGATCCGCGTTACCGGATATGACACTTCGC-TTCCTGAGATTGATATGCAGA 505
Query 663 TGGC-CTTGTGTGAACATTTCTCTTCATGTGGAGAGGTCACGCAAGTTGTGGTTCTGC-C 720
| || || |||| |||||||||| ||||||||| | ||| || ||||| | ||||| | |
Sbjct 506 TCGCGCT-GTGTAAACATTTCTCCTCATGTGGATACGTCTCGAAAGTTATAGTTCT-CTC 563
Query 721 TAGCGGTTCAGGTT-CCATTTATCTTCAAGGAGAAAGATGTG-AGGACAAGGCGCTTCAA 778
||||||| ||| || || | | |||| ||||||||||||||| || |||||||||| ||
Sbjct 564 TAGCGGTGCAGCTTTCC-TGTGTCTTAAAGGAGAAAGATGTGTAG-ACAAGGCGCTGGAA 621
Query 779 CTAAATGGATGTAAAATGGGAGGAATGAATCTTGTAGTTGAATCTGTTTTGATA-GAACC 837
|||| | ||||||| |||||||||| || ||||||||||||| ||||| || || ||
Sbjct 622 CTAAGTCGATGTAACATGGGAGGAAGGACTCTTGTAGTTGAACCTGTTGTGCCGCGA-CC 680
Query 838 CGA-AGACCTaaaaaaaGAAAAGGGCGC 864
||| | |||||||||| | |||| |||
Sbjct 681 CGATAT-CCTAAAAAAA-AGAAGGCCGC 706
> Ahg892255 jgi|Araly1|892255|Al_scaffold_0006_251
Length=789
Score = 451 bits (244), Expect = 5e-126
Identities = 630/805 (78%), Gaps = 72/805 (9%)
Strand=Plus/Plus
Query 227 ATGGACGAATCCGCCATCAAAGGTATGAAATTGCTGCAATTGAACGAGATTGGTGCAAAC 286
||||||||| |||| ||||||||| ||||||| ||| |||||||||| | |||| || ||
Sbjct 1 ATGGACGAAACCGCTATCAAAGGTCTGAAATTACTGGAATTGAACGATAGTGGTTCAGAC 60
Query 287 TCT--CG-A--AAGC-CCCGTA--T-C-CCTTGGACGAAGATTTCCGTGGAGGGATATGA 336
||| | | || | ||| | | || | |||| ||||||||| |||||||||||
Sbjct 61 TCTGGTGAATCAAACTGTTGTAGTTGCACC-AGCACGACGATTTCCGTTGAGGGATATGA 119
Query 337 CACTAGGCTCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGCTTCATGCGG 396
|||| |||| || ||||| | |||| ||||||||||||||||||||||||||||||||
Sbjct 120 CACTTGGCTTCGAAAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGCTTCATGCGG 179
Query 397 AAAGATCACACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAAGAGTGTCGC 456
| |||||||| |||||||||| |||| |||||||||||||||||||||||||||||| ||
Sbjct 180 AGAGATCACAAATATTTATGTACCCACAGACTTTGAAAGGGGTATCCTCAAGAGTGTTGC 239
Query 457 CTTCATGTGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAGTGGAACTGA 516
||||||| | ||| | |||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 240 CTTCATGAGGATCGAGGGAGAAGGTGCCGAAGAAAAGGCATTGCAACTTAGTGGAACTGA 299
Query 517 CG-CGGGAGGATGGACTGCAATCGTTAAGCCTGCACTC-TGGCAGAAAGAAATCATGGAT 574
|| ||| |||||||||||| |||||||||||||||| | | |||||||| | ||||||||
Sbjct 300 CGTCGG-AGGATGGACTGCTATCGTTAAGCCTGCAC-CGTCGCAGAAAGTATTCATGGAT 357
Query 575 ---CCTTGG----CT--TCCT-GG----CA--TGC-CCAAACT-TG--AAA-CACACAGG 613
|||||| || |||| || | ||| || | | ||| |||||| |
Sbjct 358 GATCCTTGGTATGCTGGTCCTAGGTGTGCTGCTGCTCCCGCCGATACCAAAACACACATG 417
Query 614 GTCCGCGTTACGGGATATGACACTT-GTGTTCCTAAGATTGATATCCAGATGGC-CTTGT 671
|||||||||| ||||||||||||| | |||||||||||||||| ||||| || || ||
Sbjct 418 ATCCGCGTTACCGGATATGACACTTCGC-TTCCTAAGATTGATATGCAGATCGCGCT-GT 475
Query 672 GTGAACATTTCTCTTCATGTGGAG-AGGTCACGCAAGTTGTGGTTCTGC-CTAGCGGTTC 729
| |||||||||| ||||||||| | || | ||||| | ||||| | |||||||| |
Sbjct 476 ATAAACATTTCTCCTCATGTGGATCAA-TCTGGAAAGTTATAGTTCT-CTCTAGCGGTGC 533
Query 730 AGGTTCCATTTATCTTCAAGGAGAAAGATGTG-AGGACAAGGCGCTTCAACTAAATGGAT 788
|| || ||||||||| ||||||||||||||| || |||||||||| |||||| ||||
Sbjct 534 AGCTTTTATTTATCTTGAAGGAGAAAGATGTGTAG-ACAAGGCGCTGGAACTAAGTGGAC 592
Query 789 GTAAAATGGGAGGAAT-GAATCTTGTAGTTGAATCTGTTTTGATA-GAACCCGAAGACCT 846
| || ||||||||| | || ||||||||||||| ||||| || || ||||| | ||
Sbjct 593 GGAACATGGGAGGA-TCGACTCTTGTAGTTGAACCTGTTGTGCCGCGA-CCCGAT-ATCT 649
Query 847 aaaaaaaGAA-AAGGGCGCGCCATCATCACGCCTACTGGCCATACTGGCTATACGC-CCT 904
|||||| || |||| | ||| || | || ||| | |||||||||||| | ||
Sbjct 650 TAAAAAA-AAGAAGG-C-CGC--TCGCCT-GC--ACTA-C--TACTGGCTATACTCTCCC 698
Query 905 TAAGTTGTTTA-T-GCAAGGCGTATGAGCTTaagaagaagaagatggagatggagatgga 962
|||| |||| | | | || | | || ||||||||||||||||||| ||||||||
Sbjct 699 -AAGTACTTTACTTG-A-GGTGGCTAAGAAGAAGAAGAAGAAGATGGAGACAGAGATGGA 755
Query 963 gatggagatgggtgagaagaagaag 987
|||||||| || ||||| |||||
Sbjct 756 GATGGAGAAGG---AGAAGGAGAAG 777
> Ahg905423 jgi|Araly1|905423|Al_scaffold_0003_2551
Length=960
Score = 435 bits (235), Expect = 5e-121
Identities = 599/764 (78%), Gaps = 67/764 (9%)
Strand=Plus/Plus
Query 270 ACGAGATTGGTGCAAACTCTCGAAA-GCCCCGTATC-CCTTGGACGAAGATTTCCGTGGA 327
|||| | ||||||| |||||| ||| ||||||||| || | |||| | ||||||| ||
Sbjct 92 ACGATAGTGGTGCAGACTCTC-AAACTCCCCGTATCTCC-AGCACGACGGTTTCCGTTGA 149
Query 328 GGGATATGACACTAGGCTCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGC 387
||||||||||||| |||| || ||||| | |||| |||||||||||||||||||||||
Sbjct 150 GGGATATGACACTTGGCTTCGAAAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGC 209
Query 388 TTCATGCGGAAAGATCACACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAA 447
|||||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||
Sbjct 210 TTCATGCGGAGAGATCACAAATATTTATGTACCCACAGACTTTGAAAGGGGTATCCTCAA 269
Query 448 GAGTGTCGCCTTCATGTGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAG 507
|||||| ||||||||| | ||| | |||||||||| ||||||||||||||||| |||||
Sbjct 270 GAGTGTTGCCTTCATGAGGATCGAGGGAGAAGGTGCCGAAGAAAAGGCATTGCAACTTAG 329
Query 508 TGGAACTGACG-CGGGAGGATGGACTGCAATCGTTAAGCCTGCACTCTGGCAGAAAGAAA 566
|||||||||| ||| |||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 330 TGGAACTGACATCGG-AGGATGGACTGCTATCGTTAAGCCTGCACCCTGGCAGAAAGTAT 388
Query 567 TCATGGAT---CCTTGG----CT--TCCT-GG----CA--TGC-CCAAACT-TG--AAA- 605
|||||||| ||| || || |||| || | ||| || | | |||
Sbjct 389 TCATGGATGATCCTAGGTATGCTGGTCCTAGGTGTGCTGCTGCTCCCGCCGATACCAAAA 448
Query 606 CACACAGGGTCCGCGTTACGGGATATGACACTT-GTGTTCCTAAGATTGATATCCAGATG 664
|||||| | ||||| |||| ||||||||||||| | |||||||||||||||| |||||
Sbjct 449 CACACATGATCCGCATTACCGGATATGACACTTCGC-TTCCTAAGATTGATATGCAGATC 507
Query 665 GC-CTTGTGTGAACATTTCTCTTCATGTGGAG-AGGTCACGCAAGTTGTGGTTCTGCCTA 722
|| || || | |||||||||| ||||||||| | || | ||||| | ||||| | |
Sbjct 508 GCGCT-GTATAAACATTTCTCCTCATGTGGATCAA-TCTGGAAAGTTATAGTTCT-CAAA 564
Query 723 -GCGGTTCAGGTTCCATTTATCTTCAAGGAGAAAGATGTG-AGGACAAGGCGCTTCAACT 780
||||| ||| || ||||||||| ||||||||||||||| || |||||||||| ||||
Sbjct 565 AGCGGTGCAGCTTTTATTTATCTTGAAGGAGAAAGATGTGTAG-ACAAGGCGCTGGAACT 623
Query 781 AAATGGATGTAAAATGGGAGGAAT-GAATCTTGTAGTTGAATCTGTTTTGATA-GAACCC 838
|| |||| | || ||||||||| | || ||||||||||||| ||||| || || |||
Sbjct 624 AAGTGGACGGAACATGGGAGGA-TCGACTCTTGTAGTTGAACCTGTTGTGCCGCGA-CCC 681
Query 839 GA-AGACCTaaaaaaaGAAAAGGGCGCGCCATCATCACGCCTACTGGCCATACTGGCTAT 897
|| | |||||||||| | |||| | ||| || | || ||| | ||||||||||
Sbjct 682 GATAT-CCTAAAAAAA-AGAAGG-C-CGC--TCGCCT-GC--ACTA-C--TACTGGCTAT 729
Query 898 ACGC-CCTTAAGT-TGTTTA-T-GCAAGGCGTATGAGCTTaagaagaagaagatggagat 953
|| | || |||| | |||| | | | || | | || |||||||||||||||||||
Sbjct 730 ACTCTCCC-AAGTAT-TTTACTTG-A-GGTGGCTAAG---AAGAAGAAGAAGATGGAGAC 782
Query 954 ggagatggagatggagatgggtga-gaagaagaagaagaagaag 996
|||| ||||| ||||| || || | ||||| ||||| |||||
Sbjct 783 AGAGAAGGAGAAGGAGAAGGA-GAAGGAGAAGGAGAAGGAGAAG 825
> Ahg892253 jgi|Araly1|892253|Al_scaffold_0006_249
Length=486
Score = 268 bits (145), Expect = 6e-71
Identities = 267/326 (82%), Gaps = 8/326 (2%)
Strand=Plus/Plus
Query 227 ATGGACGAATCCGCCATCAAAGGTATGAAATTGCTGCAATTGAACGAGATTGGTGCAAAC 286
||||| ||||| |||||||||||| ||||||||||| |||| ||||| | ||||||| ||
Sbjct 1 ATGGAAGAATCAGCCATCAAAGGTCTGAAATTGCTGGAATTCAACGATAGTGGTGCAGAC 60
Query 287 TCTCGAAAGC-C-CCGTATCCCTTGGACGAAGATTTCCGTGGAGGGATATGACACTAGGC 344
|||| ||| | | | ||| | || | ||| |||||||| || |||||| |||||| ||
Sbjct 61 TCTC-AAA-CTCACAGTAGCACTAGTACGGCTATTTCCGTTGAAGGATATAACACTACGC 118
Query 345 -TCCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATC 403
| | |||||| | ||| ||||| |||| ||||||||||||||||||||||||||||
Sbjct 119 TTAAG-GAGTATCCTCTCAGGCTCGCATTGGCAAAACATTTCGCTTCATGCGGAAAGATC 177
Query 404 ACACATATTTATGTTCCCAGAGACTTTGAAAGGGGTA-TCCTCAAGAGTGTCGCCTTCAT 462
||||| ||||||||||| ||||||||| ||| | | |||||||||| | | ||||| |
Sbjct 178 ACACAAATTTATGTTCCTAGAGACTTTAAAAAGAA-ACTCCTCAAGAGAGCCTCCTTCGT 236
Query 463 GTGTATCAAAGGAGAAGGTGGCGAAGAAAAGGCATTGCTGCTTAGTGGAACTGACGCGGG 522
|| ||| | ||||| | || ||||||||||||||||| |||||||||||||||| ||
Sbjct 237 TTGGATCGAGGGAGACGATGCCGAAGAAAAGGCATTGCAACTTAGTGGAACTGACGTTGG 296
Query 523 AGGATGGACTGCAATCGTTAAGCCTG 548
|||||||||||| |||||||||||||
Sbjct 297 AGGATGGACTGCTATCGTTAAGCCTG 322
> Ahg916949 jgi|Araly1|916949|Al_scaffold_0008_1700
Length=723
Score = 167 bits (90), Expect = 2e-40
Identities = 203/256 (79%), Gaps = 14/256 (5%)
Strand=Plus/Plus
Query 316 GATTTCCGTGGAGGGATATGACACTAGGCTCCGT-GAGTATACAGTCAAGCTCGTGTTGG 374
||||||||| || |||||||||||| ||| | | || ||| | ||||||||| ||| |
Sbjct 66 GATTTCCGTTGAAGGATATGACACTTCGCTTCATGGA-TATCCTCTCAAGCTCGCGTT-G 123
Query 375 A-AAAACATTTCGCTTCATGCGGAAAGATCACACA-TAT-TTATGTTCCCAGAGACTTTG 431
| ||| || ||||||||||||||||| ||| || | ||| || |||||| |||||||||
Sbjct 124 AGAAAGCACTTCGCTTCATGCGGAAAAATCGCA-AGTATGTT-TGTTCCAAGAGACTTTA 181
Query 432 AAAGGGGTATCCTCAAGAGTGTCGC-CTTCATGTG-TATCAAAGGAGAAGGTGGCGA-AG 488
||||||||||||||||||| | | |||||| || | | ||||||||| |||| ||
Sbjct 182 AAAGGGGTATCCTCAAGAG-CCCTCTCTTCAT-TGATTTTTGGGGAGAAGGT-GCGAGAG 238
Query 489 AAAAGGCATTGCTGCTTAGTGGAACTGACGCGGGAGGATGGACTGCAATCGTTAAGCCTG 548
| ||||||||| |||||||||| ||||| |||| |||||| || | |||||||| |||
Sbjct 239 ACAAGGCATTGGAACTTAGTGGAAGTGACGTGGGACGATGGAATGTAGTCGTTAAGGCTG 298
Query 549 CACTCTGGCAGAAAGA 564
|| | ||||| ||||
Sbjct 299 TACCCCGGCAGGAAGA 314
> Ahg892227 jgi|Araly1|892227|Al_scaffold_0006_223
Length=579
Score = 137 bits (74), Expect = 2e-31
Identities = 95/105 (90%), Gaps = 1/105 (1%)
Strand=Plus/Plus
Query 346 CCGTGAGTATACAGTCAAGCTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATCAC 405
||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 72 CCG-GAGTATCCTCTCAAACTCGTGTTGGAAAAACATTTCGCTTCATGCGGAAAGATCAC 130
Query 406 ACATATTTATGTTCCCAGAGACTTTGAAAGGGGTATCCTCAAGAG 450
| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 131 AAATATTTATGTTCCCAAAGACTTTGAAAGGAAAATCCTCAAGAG 175
> Ahg918673 jgi|Araly1|918673|Al_scaffold_0777_2
Length=711
Score = 89.8 bits (48), Expect = 5e-17
Identities = 79/93 (85%), Gaps = 6/93 (6%)
Strand=Plus/Plus
Query 620 GTTACGGGATATGACACTTGTG-TTCCTAAGATTGATATCCAGAT-GGCCTTGTGTGAAC 677
|||||||| |||||||||| | | ||| |||||||| ||||||| || | || || |||
Sbjct 445 GTTACGGGTTATGACACTT-CGCTCCCTGAGATTGATCTCCAGATCGGGC-TGAGTAAAC 502
Query 678 ATTTCTCTTCATGTGGAGAGGTCACGCAA-GTT 709
||||||||||||||||||||||||| ||| |||
Sbjct 503 ATTTCTCTTCATGTGGAGAGGTCAC-CAATGTT 534
> Ahg911175 jgi|Araly1|911175|Al_scaffold_0001_1429
Length=651
Score = 63.9 bits (34), Expect = 3e-09
Identities = 71/88 (81%), Gaps = 6/88 (7%)
Strand=Plus/Plus
Query 618 GCGTT-ACGGGATATGACACTT-GTGTTCCTAAGAT-TGATATCCAGATGGCCTTGTGTG 674
||||| | |||||||||||||| | |||| | | | |||| || || | || ||| |
Sbjct 53 GCGTTGA-GGGATATGACACTTCG-GTTCATGCG-TATGATCTCAAGCTTGCGTTGAGAA 109
Query 675 AACATTTCTCTTCATGTGGAGAGGTCAC 702
||||||||||||||||||||||||||||
Sbjct 110 AACATTTCTCTTCATGTGGAGAGGTCAC 137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48225490005
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5