BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03500.1
Length=885
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349604 jgi|Araly1|349604|fgenesh1_pg.C_scaffold_6000197 802 0.0
Ahg892260 jgi|Araly1|892260|Al_scaffold_0006_256 785 0.0
Ahg905426 jgi|Araly1|905426|Al_scaffold_0003_2554 636 0.0
> Ahg349604 jgi|Araly1|349604|fgenesh1_pg.C_scaffold_6000197
Length=507
Score = 802 bits (434), Expect = 0.0
Identities = 483/507 (95%), Gaps = 2/507 (0%)
Strand=Plus/Plus
Query 227 ATGGCTACAGCTACATATCCACCTCCTCCTCCATATTACAGACTCTACAAGGATTTCTCA 286
|||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 1 ATGGCTACAGCTACGTATCCACCTCCTCCACCGTATTACAGACTCTACAAGGATTACTCA 60
Query 287 GAAAACACTGATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTACGTCTGTTTT 346
|||||| || ||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 61 GAAAACCCTAATTCTGCTCCTGAACCTCCTCCTCCCATTGAAGGCACCTACGTTTGTTTC 120
Query 347 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 180
Query 407 CTTTATCCAAAAGATTCTAATCTTGATTACAAGAAGGAACTCAGGTCACTGAATAGAGAA 466
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CTTTATCCCAAAGATTCTAATGTTGATTATAAGAAGGAACTCAGGTCACTGAATAGAGAA 240
Query 467 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGACAGACCTTCTCAATATGCG 526
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGATAGACCTTCTCAATATGCA 300
Query 527 AAGAGAATTGGTGAAATTTCTTCAATCTTCAAGAACTTGCATCACCTTCTCAATTCCTTG 586
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AAGAGGATTGGTGAAATTTCTTCAATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 360
Query 587 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 646
|| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 AGACCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACGGAGG 420
Query 647 AAACAAGCTGTGGAAGACATTAAGAGGAGGAGAGAAGAAGCACAAG-GACTTCTTAAGGA 705
|||||||||||||| |||||||||||||| |||||||||||||| | |||||||||||||
Sbjct 421 AAACAAGCTGTGGAGGACATTAAGAGGAGAAGAGAAGAAGCACA-GCGACTTCTTAAGGA 479
Query 706 TGCTTTCGTCACTTTAGATGGTCAATA 732
||||| |||||||||||| ||||||||
Sbjct 480 TGCTTACGTCACTTTAGACGGTCAATA 506
> Ahg892260 jgi|Araly1|892260|Al_scaffold_0006_256
Length=504
Score = 785 bits (425), Expect = 0.0
Identities = 475/500 (95%), Gaps = 0/500 (0%)
Strand=Plus/Plus
Query 227 ATGGCTACAGCTACATATCCACCTCCTCCTCCATATTACAGACTCTACAAGGATTTCTCA 286
|||||||||||||| |||||||||||||| || |||||||||||||||||||||| ||||
Sbjct 1 ATGGCTACAGCTACGTATCCACCTCCTCCACCGTATTACAGACTCTACAAGGATTACTCA 60
Query 287 GAAAACACTGATTCTGCTCCTGAACCTCCTCCTCCGATTGAAGGCACCTACGTCTGTTTT 346
|||||| || |||||||||||||||||| |||||| ||||||||||||||||| |||||
Sbjct 61 GAAAACCCTAATTCTGCTCCTGAACCTCATCCTCCCATTGAAGGCACCTACGTTTGTTTC 120
Query 347 GGAGGCAACTATACTACTGAAGATGTTCTTCCAAGCTTAGAAGAACAAGGAGTGCCTCAA 406
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 121 GGAGGCAACTATACTACGGAGGATGTTCTTCCGAGCTTAGAAGAACAAGGAGTGCCTCAA 180
Query 407 CTTTATCCAAAAGATTCTAATCTTGATTACAAGAAGGAACTCAGGTCACTGAATAGAGAA 466
|||||||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 181 CTTTATCCCAAAGATTCTAATGTTGATTATAAGAAGGAACTCAGGTCACTGAATAGAGAA 240
Query 467 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGACAGACCTTCTCAATATGCG 526
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 241 CTACAGTTACATATATTGGAGCTTGCTGATGTTCTTGTTGATAGACCTTCTCAATATGCA 300
Query 527 AAGAGAATTGGTGAAATTTCTTCAATCTTCAAGAACTTGCATCACCTTCTCAATTCCTTG 586
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 AAGAGGATTGGTGAAATTTCTTCAATCTTCAAGAATTTGCATCACCTTCTCAATTCCTTG 360
Query 587 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGCCTCACCAAGCGAGAGCAACGCTTATTCACATTATGGAACTTCAAATTCAACAGAGG 420
Query 647 AAACAAGCTGTGGAAGACATTAAGAGGAGGAGAGAAGAAGCACAAGGACTTCTTAAGGAT 706
|||||||||||||| |||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 421 AAACAAGCTGTGGAGGACATTAAGAGGAGAAGAGAAGAAGCACAACGACTTCTAAAGGAT 480
Query 707 GCTTTCGTCACTTTAGATGG 726
|||||||||||||| |||||
Sbjct 481 GCTTTCGTCACTTTGGATGG 500
> Ahg905426 jgi|Araly1|905426|Al_scaffold_0003_2554
Length=462
Score = 636 bits (344), Expect = 0.0
Identities = 387/408 (95%), Gaps = 1/408 (0%)
Strand=Plus/Plus
Query 319 TCCGATTGAAGGCACCTACGTCTGTTTTGGAGGCAACTATACTACTGAAGATGTTCTTCC 378
||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||
Sbjct 52 TCC-ATTGAAGGCACCTACGTTTGTTTCGGAGGCAACTATACTACGGAGGATGTTCTTCC 110
Query 379 AAGCTTAGAAGAACAAGGAGTGCCTCAACTTTATCCAAAAGATTCTAATCTTGATTACAA 438
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 111 GAGCTTAGAAGAACAAGGAGTGCCTCAACTTTATCCCAAAGATTCTAATGTTGATTACAA 170
Query 439 GAAGGAACTCAGGTCACTGAATAGAGAACTACAGTTACATATATTGGAGCTTGCTGATGT 498
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 171 GAAGGAACTCAGGTCGTTGAATAGAGAACTACAGTTACATATACTGGAGCTTGCTGATGT 230
Query 499 TCTTGTTGACAGACCTTCTCAATATGCGAAGAGAATTGGTGAAATTTCTTCAATCTTCAA 558
||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 231 TCTTGTTGATAGACCTTCTCAATATGCAAAGAGGATTGGTGAAATTTCTTCAATCTTCAA 290
Query 559 GAACTTGCATCACCTTCTCAATTCCTTGAGGCCTCACCAAGCGAGAGCAACGCTTATTCA 618
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 291 GAATTTGCATCACCTTCTCAATTCCTTGAGGCCTCACCAAGCGAGAGCAACGCTTATTCA 350
Query 619 CATTATGGAACTTCAAATTCAACAGAGGAAACAAGCTGTGGAAGACATTAAGAGGAGGAG 678
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 351 CATTATGGAACTTCAAATTCAACAGAGGAAACAAGCCGTGGAAGACATTAAGAGGAGAAG 410
Query 679 AGAAGAAGCACAAGGACTTCTTAAGGATGCTTTCGTCACTTTAGATGG 726
||||||||||||| ||||||| ||||||||||||||| |||| |||||
Sbjct 411 AGAAGAAGCACAACGACTTCTAAAGGATGCTTTCGTCGCTTTGGATGG 458
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32785708620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5