BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03510.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939735 jgi|Araly1|939735|scaffold_600279.1 1441 0.0
> Ahg939735 jgi|Araly1|939735|scaffold_600279.1
Length=921
Score = 1441 bits (780), Expect = 0.0
Identities = 875/921 (95%), Gaps = 5/921 (1%)
Strand=Plus/Plus
Query 111 AAT-AAAAAACGGA-GGATCATGACAAGTGTTCTTGAGGAGAGTGGAGACCACGCGCGTC 168
||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3 AATCAAAAAACGGAGGGATCATGACAAGTGTTCTTGAGGAGAGTGGAGACCACGCGCGTC 62
Query 169 TTGTTCTCCTCATCAAGGGCAAACGCACCAAACGTCAGCGTTCTGCGTCTCCTCTTATGA 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 63 TTGTTCTCCTCATCAAGGGCAAACGCACCAAACGTCAGCGTTCTGCGTCTCCTCTTATGA 122
Query 229 TGAACGCTGCTGCAGTATCCAGCGTTTGTAGCGGTGAACGATCATCAGTGGAGGTAAGAG 288
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 123 TGAACGGAGCTGCAGTATCCAGCGTTTGTAGCGGTGAACGATCATCAGTAGAGGTAAAAG 182
Query 289 AAGAAGAAGCTGCTGGTGAAGTAGAATTCCAAGGAGCTACCGATGAAGACGAAGATATGG 348
|||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||
Sbjct 183 AAGAAGAAGCTGCTGGTGAAGTAGAATTCCGAGGAGCTACCGACGAAGATGAAGATATGG 242
Query 349 CGAATTGTCTGATCTTGTTGTCGCAAGGACATCAAGCAAAGAGCAGC-GACGATCATTTG 407
||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||
Sbjct 243 CGAATTGTCTGATGTTGTTGTCGCAAGGACATCAAGCAAAGAGCAGTAG-CGATGATTTG 301
Query 408 TCGATGCAGAGAATGGGTTTCTTTAGCAACAAGAAACCGGTGGCTTCTCTAGGGTTAGGG 467
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 302 TCGATGCAGAGAATGGGTTTCTCTAGCAACAAGAAACCGGTGGCTTCTCTAGGGTTAGGG 361
Query 468 CTAGACGGTGTTTACCAGTGCAAAACGTGTGATAAAAGCTTCCATTCGTTCCAAGCGCTA 527
||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 362 CTAGACGGTGTTTACCAATGCAAAACGTGTGATAAAAGCTTCCACTCGTTTCAAGCACTA 421
Query 528 GGAGGGCACAGGGCTAGTCACAAGAAGCCAAAACTTGGAGCTAGCGTTTTCAAATGCGTC 587
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 422 GGAGGGCACAGGGCTAGCCACAAGAAGCCAAAACTTGGAGCTAGCGTTTTCAAATGCGAC 481
Query 588 GAGAAGAAAACGGCGTCTGCGTCTACGGTTGAAACAGTGGAAGCTGGAGCCGTAGGAAGC 647
||||||||||| ||||||||||||| | ||||||| ||||||| ||||||||||||||||
Sbjct 482 GAGAAGAAAACTGCGTCTGCGTCTATGATTGAAACTGTGGAAGTTGGAGCCGTAGGAAGC 541
Query 648 TTTCTTTCCCTACAAGTGACTAGTAGTGATGGTAGCAAGAAACCGGAGAAAACACATGAA 707
|||||||| |||||||| ||||| | |||||||| |||||||||||||||||||||||||
Sbjct 542 TTTCTTTCTCTACAAGTAACTAGCAATGATGGTACCAAGAAACCGGAGAAAACACATGAA 601
Query 708 TGTTCAATCTGCAAGGCCGAGTTTTCTTCAGGACAAGCCTTAGGAGGACATATGAGGAGA 767
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 602 TGTTCAATCTGTAAGGCCGAGTTTTCTTCAGGACAAGCCTTAGGAGGTCATATGAGGAGA 661
Query 768 CATAGAGGTTTAACAATAAACGCAAACGCTACTTCAGCAATCAAAACAGCGATATCATCA 827
||||||||||||||||||||||||||||||| |||| ||||||||||| | |||||||||
Sbjct 662 CATAGAGGTTTAACAATAAACGCAAACGCTAGTTCAACAATCAAAACAACAATATCATCA 721
Query 828 TCAAGTCATCATCACCATGAAGAATCTATACGGCCAAAGAACTTTCTCCAGTTAGATCTG 887
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 TCAAGTCATCATCACCATGAAGAATCTATACGGCCAAAGAACTTTCTCCAGTTAGATCTG 781
Query 888 AATCTTCCAGCACCCGAAGATGAACGATGCTGCGAGAAACCGAAATTCGCGTTTGCATCC 947
|||||||||||||| |||| ||||||||||||||||||||| |||||||| ||||| |||
Sbjct 782 AATCTTCCAGCACCAGAAGCTGAACGATGCTGCGAGAAACCAAAATTCGCATTTGCGTCC 841
Query 948 AAAGATCAGATTCTTCTCTTCACGGCCGCGTCAAATTCTTTGATTGATTGTCATCACTAA 1007
||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 842 AAAGATCAGATTCTTCTCTTCGCGGCAGCGTCCAATTCTTTGATTGATTGTCATCACTAA 901
Query 1008 TTAAGTAGTTCTTTGTAATTA 1028
||||||||||||| |||||||
Sbjct 902 TTAAGTAGTTCTT-GTAATTA 921
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5