BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03520.1
Length=1150
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2 1742 0.0
Ahg478314 jgi|Araly1|478314|fgenesh2_kg.3__1015__AT3G09900.1 808 0.0
Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1 442 3e-123
> Ahg487128 jgi|Araly1|487128|fgenesh2_kg.6__262__AT5G03520.2
Length=1117
Score = 1742 bits (943), Expect = 0.0
Identities = 1069/1125 (95%), Gaps = 27/1125 (2%)
Strand=Plus/Plus
Query 42 TAATCAACTTGTTTTCTTCAGCGAGCGACATTTTGGAAGGAAGCATTCCATTAG------ 95
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 1 TAATCAACTTGTTTTCTTCAGCGAGCGACA--TTGGAAGGAAGCATTTCATTAGCTTTTT 58
Query 96 -C-TTTTTTGCTGTCTCCAGAAAATAAATTTTCAATCTTTCGTCGG----AAAA-AAGAA 148
| ||||||||||||||||| ||||||| ||||||||||||||||| |||| |||||
Sbjct 59 CCTTTTTTTGCTGTCTCCAG-AAATAAAATTTCAATCTTTCGTCGGAAAAAAAAGAAGAA 117
Query 149 GAAGAAGAAGCAGAGCTGGGTTTAGTTTTTTCACGAGAAGCAAAGAGATCAATAAGTCAG 208
||||||||||||||| |||||||||||||| | ||||||||||||||||||||| | ||
Sbjct 118 GAAGAAGAAGCAGAGTTGGGTTTAGTTTTTGC-GGAGAAGCAAAGAGATCAATAAATTAG 176
Query 209 TGAGCTTTTTTCTCGTT-TCTGACGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTA 267
|||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||
Sbjct 177 TGAGCTTTTTTCTC-TTCTCTG-CGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTA 234
Query 268 TGATTACCTCATCAAGCTTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTT 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 235 TGATTACCTCATCAAGCTTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTT 294
Query 328 ACTTCGATTCTCAGATGATACTTTCACTACAAGTTTCATTACTACCATT-GG--T-ATTG 383
|||||||||||| |||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 295 ACTTCGATTCTCTGATGATACTTTCACTACAAGTTTCATTACTACCATTGGGTATAATTG 354
Query 384 ACTTCAAGATAAGAACTGTTGAACTTGATGGGAAGCGTATCAAATTGCAGATTTGGGACA 443
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 355 ACTTCAAGATAAGAACTGTTGAACTTGATGGGAAGCGTATCAAATTGCAGATATGGGACA 414
Query 444 CTGCTGGTCAAGAACGTTTCAGAACTATCACTACAGCGTATTACAGGGGAGCGATGGGTA 503
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 415 CTGCTGGTCAAGAACGTTTCAGAACTATTACTACAGCGTATTACAGGGGAGCGATGGGTA 474
Query 504 TATTGCTTGTCTACGATGTAACGGATGAGTCATCTTTTAACAATATTAGGAACTGGATGA 563
||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 475 TATTGCTTGTCTACGATGTAACGGATGAGTCGTCTTTCAACAATATTAGGAACTGGATGA 534
Query 564 AGAACATTGAGCAACATGCCTCAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTG 623
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 535 AGAACATCGAGCAACATGCCTCAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTG 594
Query 624 ATATGGATGAAAGCAAAAGGGCTGTTCCAACAGCAAAGGGCCAAGCTTTGGCTGATGAGT 683
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 ATATGGATGAAAGCAAAAGGGCTGTTCCAACAGCAAAGGGCCAAGCTTTGGCTGATGAGT 654
Query 684 ATGGAATCAAATTCTTTGAGACGAGTGCAAAAACAAACCTCAATGTCGAAAATGTTTTCA 743
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 655 ATGGAATCAAATTCTTTGAGACGAGTGCCAAAACAAACCTCAATGTCGAAAATGTTTTCC 714
Query 744 TGTCAATCGCAAAAGACATAAAACAAAGATTGACAGAAACCGACACGAAGGCAGAGCCCC 803
| ||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 715 TTTCAATCGCAAAAGACATAAAACAAAGATTGACAGAAACCGATACAAAAGCAGAGCCCC 774
Query 804 AAGGCATCAAGATCACTAAACAAGATACTGCCGCATCGTCTTCTACAGCCGAGAAGTCAG 863
|||||||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||
Sbjct 775 AAGGCATCAAGATCACCAAACAAGATACTGCCTCATCATCTTCTGCAGCCGAGAAGTCAG 834
Query 864 CTTGCTGTAGTTACGTTTAGGAGTATGATTGCTCTTTTTCGCCTGCACCGGGTTTTTTAA 923
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 835 CTTGCTGTAGTTACGTTTAGGAGTATGATTGCTCTTTTTCGCCTGCACC-GGTTTTTT-A 892
Query 924 ATATCTGGCCATCTTTTTCATCTCTTACGTCTCAAATCAGAGATAATTCTCATGTTGTTA 983
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 893 ATATCTGGCCATCTTTCTCATCTCTTACGTCCCAAATCAGAGATAATTCTCATGTTGTTA 952
Query 984 CCTAGAACGAGTAGGAAATCTCATTGATGGTTGTGATCTTTATGTCTAATTTGTTATCTC 1043
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 CCTAGAACGAGTAGGAAATCTCATTGATGGTTGTGATCTTTATGTCTAATTTGTTATCTC 1012
Query 1044 CATAATTCCTGTACAATGATCTTCCTGATATGGAAGACTATGTTGGTCAAAAAACTATGT 1103
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1013 CATAATTCCTGTACAATGATCTTCCTGAAATGGAAGACTATGTTGGTCAAAAAACTATGT 1072
Query 1104 GAAAAAGACTTTGAATTTAT-AAAAATGAAACTGTTGTAGTGTGT 1147
| ||||||||||||||||| ||||||| ||||||||||||||||
Sbjct 1073 TACAAAGACTTTGAATTTATGAAAAATGGAACTGTTGTAGTGTGT 1117
> Ahg478314 jgi|Araly1|478314|fgenesh2_kg.3__1015__AT3G09900.1
Length=857
Score = 808 bits (437), Expect = 0.0
Identities = 593/669 (89%), Gaps = 7/669 (1%)
Strand=Plus/Plus
Query 225 TTCTGACGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTACCTCATCAAGC 284
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 TTCTG-TGATGGCGGTTGCGCCGGCAAGAGCTCGTTCAGACTATGATTACCTCATCAAGC 144
Query 285 TTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTGTTACTTCGATTCTCAGATG 344
| || ||||||||||||||||||||||| || ||||| |||||||| || ||||||||||
Sbjct 145 TCCTCCTCATCGGCGATAGCGGTGTGGGAAAAAGTTGCTTGTTACTGCGTTTCTCAGATG 204
Query 345 ATACTTTCACTACAAGTTTCATTACTACCATTGGTATTGACTTCAAGATAAGAACTGTTG 404
||||||| || || |||||||||||||||||||| || || |||||||||||||| || |
Sbjct 205 ATACTTTTACCACGAGTTTCATTACTACCATTGGAATCGATTTCAAGATAAGAACAGTCG 264
Query 405 AACTTGATGGGAAGCGTATCAAATTGCAGATTTGGGACACTGCTGGTCAAGAACGTTTCA 464
|||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 265 AACTTGATGGCAAGCGTATCAAATTGCAGATTTGGGACACTGCTGGACAAGAACGTTTTA 324
Query 465 GAACTATCACTACAGCGTATTACAGGGGAGCGATGGGTATATTGCTTGTCTACGATGTAA 524
||||||| |||||||| |||||||| ||||| ||||||||||| || ||||| |||||||
Sbjct 325 GAACTATAACTACAGCATATTACAGAGGAGCTATGGGTATATTACTCGTCTATGATGTAA 384
Query 525 CGGATGAGTCATCTTTTAACAATATTAGGAACTGGATGAAGAACATTGAGCAACATGCCT 584
| |||||||||||||| ||||| ||||||||||||||||| ||||||||||| ||||| |
Sbjct 385 CAGATGAGTCATCTTTCAACAACATTAGGAACTGGATGAAAAACATTGAGCAGCATGCGT 444
Query 585 CAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTGATATGGATGAAAGCAAAAGGG 644
| |||| |||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 445 CCGATAGTGTCAACAAAATATTGGTTGGTAACAAAGCCGACATGGACGAAAGCAAAAGGG 504
Query 645 CTGTTCCAACAGCAAAGGGCCAAGCTTTGGCTGATGAGTATGGAATCAAATTCTTTGAGA 704
|||| |||||| ||||||| |||||| | ||||||||||||||||||||||||||||| |
Sbjct 505 CTGTCCCAACATCAAAGGGACAAGCTCTCGCTGATGAGTATGGAATCAAATTCTTTGAAA 564
Query 705 CGAGTGCAAAAACAAACCTCAATGTCGAAAATGTTTTCATGTCAATCGCAAAAGACATAA 764
|||||||||||||||||| |||||||| | |||||| | || ||||||||||||||||
Sbjct 565 CGAGTGCAAAAACAAACCAGAATGTCGAGCAGGTTTTCCTTTCTATCGCAAAAGACATAA 624
Query 765 AACAAAGATTGACAGAAACCGACACGAAGGCAGAGCCCCAAGGCATCAAGATCACTAAAC 824
||||||| | ||||||| ||| || || || ||||||||||| ||||||||||| ||||
Sbjct 625 AACAAAGGCTCACAGAAAGCGATACAAAAGCCGAGCCCCAAGGGATCAAGATCACCAAAC 684
Query 825 AAGATACT------GCCGCATCGTCTTCTACAGCCGAGAAGTCAGCTTGCTGTAGTTACG 878
||||| || ||| |||||||||||||| | ||||| ||||||||||| ||||| |
Sbjct 685 AAGATGCTAACAAAGCCTCATCGTCTTCTACAACTGAGAAATCAGCTTGCTGCAGTTATG 744
Query 879 TTTAGGAGT 887
||||| |||
Sbjct 745 TTTAGAAGT 753
> Ahg496120 jgi|Araly1|496120|fgenesh2_kg.8__1936__AT5G59840.1
Length=924
Score = 442 bits (239), Expect = 3e-123
Identities = 461/567 (81%), Gaps = 19/567 (3%)
Strand=Plus/Plus
Query 269 GATTACCTCATCAAGCTTCTTCTCATCGGCGATAGCGGTGTGGGGAAGAGTTGTTTG-TT 327
||||| ||||| ||||||||||||||||| |||||||||||||| || ||||||||| ||
Sbjct 107 GATTATCTCATTAAGCTTCTTCTCATCGGTGATAGCGGTGTGGGTAAAAGTTGTTTGCTT 166
Query 328 ACTT-CGATTCTCAGATGATACTTTCACTACAAGTTTCATTACTACCATTGGTATTGACT 386
|| | ||||| |||| | ||||||| || || ||||| || |||||||||||||| |
Sbjct 167 --TTAAGGTTCTCTGATGGTTCTTTCACCACTAGCTTCATCACCACCATTGGTATTGATT 224
Query 387 TCAAGATAAGAACTGTTGAACTTGATGGGAAGCGTATCAAATTGCAGATTTGGGACACTG 446
| |||||||||||| |||| |||||||| || |||||||| | ||||||||||||||||
Sbjct 225 TTAAGATAAGAACTATTGAGCTTGATGGCAAACGTATCAAGCTCCAGATTTGGGACACTG 284
Query 447 CTGGTCAAGAACGTTT-CAGAACTATCACTACAGCGTATTACAGGGGAGCGATGGGTATA 505
|||||||||||||||| | |||| ||||| || || |||||| | ||||| ||||| ||
Sbjct 285 CTGGTCAAGAACGTTTTC-GAACCATCACCACTGCTTATTACCGCGGAGCAATGGGGATT 343
Query 506 TTGCTTGTCTACGATGTAACGGATGAGTCATCTTTTAACAATATTAGGAACTGGATGAAG 565
|| || || || ||||| || || |||||||| || ||||||||||| |||||||| |
Sbjct 344 TTACTGGTGTATGATGTCACAGACGAGTCATCCTTCAACAATATTAGAAACTGGATTC-G 402
Query 566 -AACATTGAGCAACATGCCTCAGATAATGTCAACAAAATATTGGTTGGTAACAAAGCTGA 624
|| || || || || || |||||||||||||||||||| ||||| || |||||||||||
Sbjct 403 TAATATCGAACAGCACGCTTCAGATAATGTCAACAAAATCTTGGTAGGGAACAAAGCTGA 462
Query 625 TATGGATGAAAGCAAAAGGGCTGTTCCAACAGCAAAGGGCCAAGCT-TTGGCTGATGAGT 683
||||| || ||||| |||||||| |||| | ||||||| |||||| ||| ||||||| |
Sbjct 463 CATGGACGAGAGCAAGAGGGCTGTGCCAAAATCAAAGGGTCAAGCTCTTG-CTGATGAAT 521
Query 684 ATGGAATCAAATTCTTTGAGACGAGTGCAAAAACAAACCTCAATGTCGAA-AATGTTTTC 742
|||||||||| ||||| || || ||||| |||||||| || ||||| ||| || ||||||
Sbjct 522 ATGGAATCAAGTTCTTCGAAACAAGTGCCAAAACAAATCTGAATGTGGAAGAA-GTTTTC 580
Query 743 ATGTCAATCGCAAAAGACATAAAACAAAGATT-GACAGAAACCGACACGA-AGGCAGAGC 800
| || || ||||| |||||||| || ||| | | | || || ||| | | || ||||||
Sbjct 581 TTCTCCATAGCAAAGGACATAAAGCAGAGACTCG-CTGATACTGACTCTAGAG-CAGAGC 638
Query 801 CC-CAAGGCATCAAGATCA-CTAAACA 825
| ||| | |||||||||| | |||||
Sbjct 639 CTGCAACG-ATCAAGATCAGCCAAACA 664
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42888281625
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5