BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03530.1
Length=1181
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892263 jgi|Araly1|892263|Al_scaffold_0006_259 1114 0.0
Ahg478315 jgi|Araly1|478315|fgenesh2_kg.3__1016__AT3G09910.1 614 6e-175
> Ahg892263 jgi|Araly1|892263|Al_scaffold_0006_259
Length=633
Score = 1114 bits (603), Expect = 0.0
Identities = 623/633 (98%), Gaps = 0/633 (0%)
Strand=Plus/Plus
Query 330 ATGGGATCTTCTTCTGGGCAAAGTGGATACGATCTGTCTTTTAAGATCTTGTTGATTGGT 389
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGGATCTTCTTCTGGGCAAAGTGGATACGATCTGTCTTTTAAGATCTTGTTGATTGGT 60
Query 390 GATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTCAGCTTCATTTCTAGCTCCGTTGAAGAT 449
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 61 GATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTGAGCTTCATTTCCAGCTCCGTTGAAGAT 120
Query 450 CTTGCTCCTACTATTGGTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGG 509
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTTGCTCCTACCATTGGTGTTGATTTCAAGATCAAACAATTGACAGTAGGAGGCAAAAGA 180
Query 510 CTAAAACTCACAATCTGGGACACAGCTGGACAGGAACGGTTTAGAACACTGACAAGCTCT 569
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 CTAAAACTCACAATCTGGGACACAGCTGGACAGGAACGGTTTAGAACACTGACGAGCTCT 240
Query 570 TACTACAGAGGCGCCCAAGGAATCATTCTCGTTTATGATGTGACGAGAAGGGAGACATTT 629
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 241 TACTATAGAGGCGCCCAAGGAATCATTCTTGTTTATGATGTGACGAGAAGGGAGACATTT 300
Query 630 ACAAACTTAGTAGATGTGTGGGGTAAGGAGATTGAGCTTTACTCCACAAACCAAGAATGT 689
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 ACAAACTTAGTAGATGTGTGGGGTAAGGAGATTGAGCTTTATTCCACAAACCAAGAATGT 360
Query 690 GTAAGGATGCTCGTTGGGAACAAAGTCGATAGAGAATCTGAGAGAGGAGTAAGCAGAGAA 749
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTAAGGATGCTCGTTGGGAACAAAGTCGATAGAGAATCTGAGAGAGGAGTAAGCAGAGAA 420
Query 750 GAAGGGATTGCTCTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGCTAGAACT 809
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 GAAGGGATTGCTTTAGCAAAAGAACTCAACTGCATGTTTCTTGAGTGTAGTGCTAGAACT 480
Query 810 CGACAAAACGTGGAACAGTGTTTCGAAGAGTTGGCTTTGAAGATAATGGAGGTACCTAGT 869
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGACAAAACGTGGAACAGTGTTTCGAAGAGTTGGCTTTGAAGATAATGGAGGTACCTAGT 540
Query 870 CTCTTGGAAGAAGGATCAAGTGCTGTGAAGAGAAACATCTTGAAGCAGAAACCAGAACAC 929
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTCTTGGAAGAAGGATCAAGTGCTGTGAAGAGAAACATCTTGAAGCAGAAACCAGAACAC 600
Query 930 CAGACTAATACTCAATCCGGCTGTTGCAGCTAG 962
|||||||||||||||||| ||||||||||||||
Sbjct 601 CAGACTAATACTCAATCCAGCTGTTGCAGCTAG 633
> Ahg478315 jgi|Araly1|478315|fgenesh2_kg.3__1016__AT3G09910.1
Length=996
Score = 614 bits (332), Expect = 6e-175
Identities = 512/597 (86%), Gaps = 19/597 (3%)
Strand=Plus/Plus
Query 317 GAGGTTTTAGAAAATGGGATCTTCTTCTGGGCAAAGTGGATACGATCTGTCTTTTAAGAT 376
||| || ||| |||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 233 GAGATTGTAG-AAATGGGATCTTCTTCTGGGCAAAGTGGTTATGATCTATCTTTTAAGAT 291
Query 377 CTTGTTGATTGGTGATTCTGGTGTTGGTAAAAGCAGTTTGCTTGTCAGCTTCATTTCTAG 436
|||||||||||| |||||||||||||||||||| || |||||| ||||||||||||||||
Sbjct 292 CTTGTTGATTGGAGATTCTGGTGTTGGTAAAAGTAGCTTGCTTCTCAGCTTCATTTCTAG 351
Query 437 CTCCGTTGAAGATCTTGCTCCTACTATTGGTGTTGATTTCAAGATCAAACA-ATTGACAG 495
||| || |||||||||||||| || |||||||||||||| ||||||||||| | ||| ||
Sbjct 352 CTCTGTCGAAGATCTTGCTCCCACCATTGGTGTTGATTTTAAGATCAAACAGA-TGAAAG 410
Query 496 TAG-GAGGCAAAAGGCTAAAACTCACAATCTGGGACACAGCTGGACAGGAACGGTTTAGA 554
| | |||| ||||| |||||||| ||||||||||||||||||||||| ||| ||| |||
Sbjct 411 T-GAGAGGGAAAAGACTAAAACTTACAATCTGGGACACAGCTGGACAAGAAAAGTTCAGA 469
Query 555 ACACTGACAAGCTCTTACTACAGAGGCGCCCAAGGAATCATTCTCGTTTATGATGTGACG 614
||| ||||||| ||||| | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 470 ACATTGACAAGTTCTTATTTCAGGGGCTCCCAAGGAATCATTCTCGTTTATGATGTGACG 529
Query 615 AGAAGGGAGACATTTACAAACTTAGTAGATGTGTGGGGTAAGGAGATTGAGCTTTACTCC 674
| ||| || ||||||| ||||| | |||||| |||| ||| ||||||||||| || ||
Sbjct 530 AAAAGAGACACATTTATGAACTTGGCAGATGTTTGGGCTAAAGAGATTGAGCTATATTCG 589
Query 675 ACAAACCAAGAATGTGT-AAGGATGCTCGTTGGGAACAAAGTCGATAGAGAATCTGAGAG 733
|| ||||| || || | ||| ||||| ||||| |||||||| |||||||||||||||||
Sbjct 590 ACTAACCATGACTGCATTAAG-ATGCTTGTTGGCAACAAAGTTGATAGAGAATCTGAGAG 648
Query 734 AGGAG-TAAGCAGAGAAGAAGGGATTG-CTCTAGCAAAAGAACTCAACTGCATGTTTCTT 791
| || | ||| | |||||||| || | ||||||| ||||||||||| || |||||| |
Sbjct 649 -GAAGGTTAGCCGGGAAGAAGGAAT-GACTCTAGCGAAAGAACTCAAGTGTTTGTTTCAT 706
Query 792 GAGTGTAGTGCTAGAACTC-GACAAAACGTGGAACAG-TGTTTCGAAGAG-TTGGCTTTG 848
|| ||||| || ||||| | || |||||||| ||| | || ||||||||| ||| |||||
Sbjct 707 GAATGTAGCGCAAGAAC-CAGAGAAAACGTG-AACTGGTGCTTCGAAGAGCTTG-CTTTG 763
Query 849 AAGATAATGGAGGTACCTAGTCTCTTGGAAGAAGGATCAAG-TGCTGTGAAGAGAAA 904
||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||
Sbjct 764 AAGATAATGGAGGTACCTAGTCTTTTGGAAGAAGGATCAAGCT-CTGTGAAGAGAAA 819
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44070092052
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5