BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03545.1
Length=695
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487132 jgi|Araly1|487132|fgenesh2_kg.6__266__AT5G03545.1 822 0.0
> Ahg487132 jgi|Araly1|487132|fgenesh2_kg.6__266__AT5G03545.1
Length=659
Score = 822 bits (445), Expect = 0.0
Identities = 629/706 (89%), Gaps = 60/706 (8%)
Strand=Plus/Plus
Query 1 TGTCTCCATGACCAAAGACAAAGAGAGAAGCCATAAAAACCCTAACAACATCCATTGTTG 60
|||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 1 TGTCTCCATGACCAAAAACAAAGAGAGAAGGCATAAAAACTCTAACAACATCCATTGTTG 60
Query 61 AAACTCTCTTTGGCACAACACCAAACACACAAAATATGGCCATCCCCTAAAGAAACTGAA 120
||||||||||||||||||||||| |||||||||||||||||||||||| | ||
Sbjct 61 AAACTCTCTTTGGCACAACACCATACACACAAAATATGGCCATCCCCT------A---AA 111
Query 121 GCTCAAGAACCCTCTGAATCTATCAGAAGATCTCACCAATAAAGGGTTTTGAGAGGTTCA 180
| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 112 --T----AACCCTCTGAATCTAT-AGAAGATCTCACCAATAAAGGGTTTTGAGAGGTTCA 164
Query 181 AGTTTCTCTTTATGGGATGGCCCCAAACACAAGAGTACTCACAAAAGGTAAGAAGAAGAA 240
|| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 165 AGCTTCTCTTTAGGGGATGGCCCCAAACACAAGAGTGCTCACAAAAGGTAAGAAGAAGAA 224
Query 241 GAGATCTCTTGGAGATTATGATTGTGAATGTTCGTGTGTGGGTGTTGTGTAAATGatcat 300
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 225 GAGATCTCTTGGAGATTATGATTATGAATGTTTGTGTGTGGGTGTTGTGTAAATGATCAT 284
Query 301 catcatcatcatcatcatTATCCAATATCATAATTATCAATATGGtgatgatgatgatga 360
|||||| | || | || | ||||| |||||||||||||||||
Sbjct 285 CATCAT-A--AT--T-AT---C-AATAT---------------GGTGATGATGATGATGA 319
Query 361 tgaggattgtgtgtgaatggagcgatgaagattgcatgaaggttgatgaaGACAAGCTTG 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 TGA---TTGTGTGTGAATGGAGCGATGAAGATTGCATGAAGGTTGATGAAGACAAGCTTG 376
Query 421 ATGTGTCTTTTGTTATCCCTCGTTTGGGCAACTTCGATCCTTTGGCAAGCTTCGGTTCCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 377 ATGTGTCTTTTGTTATCCCTCGTTTGGGCAACTTCGATCCTTTGGCAAGCTTCGGTTCCC 436
Query 481 CTCGGAATCAGCAGATTATGATTACTATAGCTCTTATAT-GT-TTATGTTCCGTGTTTAC 538
||||||||||||||||||| ||||||| |||||||| | || ||||||||| |||||||
Sbjct 437 CTCGGAATCAGCAGATTATTATTACTA--GCTCTTATTTTGTCTTATGTTCCTTGTTTAC 494
Query 539 TTTGTTTCCGGTTTAGTTTGGTTTATTGTCTTTAATTTCGTCATGTttgtgttgaatgtg 598
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 495 TTTGTTCCCGGTTTGGTTTGGTTTATTGTCTTTAATTTCGTCATGTTTGTGTTGAATGTG 554
Query 599 tgt-t-gttgtt---atcccgtgtgatgcacca---ttcaggtgtgttcc--tat-gtgt 647
||| | |||||| ||||| |||||||||||| |||||||||||||| ||| | ||
Sbjct 555 TGTGTTGTTGTTGTTATCCCCTGTGATGCACCACCATTCAGGTGTGTTCCCCTATCG-GT 613
Query 648 gtgtgAGGAATAAAAGAATATTCGGTTTTGATATCTAAAATCAAAC 693
||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 614 GTGTGAGGAATAAAAGAATATTCGGTTTTTATATCTAAAATTAAAC 659
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25542354390
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5