BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03550.1
Length=333
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892266 jgi|Araly1|892266|Al_scaffold_0006_262 460 2e-129
> Ahg892266 jgi|Araly1|892266|Al_scaffold_0006_262
Length=303
Score = 460 bits (249), Expect = 2e-129
Identities = 282/298 (95%), Gaps = 2/298 (1%)
Strand=Plus/Plus
Query 1 ATGAACCTTCTCTGCGACATCATCGGGATACTTTACCACACGCCTCTTGGTTATCTCACC 60
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAACCTTCTCTGCAACACCATCGGGATACTTTACCACACGCCTCTTGGTTATCTCACC 60
Query 61 GAAGCAGAATTGAGCAAAGCTTCAAAGGATAT-GTGTGATCTGACACAAGCCGGTTTTAA 119
||||||||||||||||||| ||| |||||| | || ||||||||||||||| ||||||||
Sbjct 61 GAAGCAGAATTGAGCAAAGTTTCCAAGGAT-TCGTATGATCTGACACAAGCTGGTTTTAA 119
Query 120 CCTGGATTGGTTGCAGTCAAAGCTTGACATGGTTTCCTTGGAGAAGAAGACTTCTGAAGA 179
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 120 GCTGGAGTGGTTGCAGTCAAAGCTTGACAAGGTTTCCTTGGAGAAGAAGACTTCTGAAGA 179
Query 180 ACGGATTCTGGAACTCAAACTAGAGGTCAAGAAACTCGTGATGACTGCGACTGATCTCAA 239
||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 180 ACGGATTGTGGAACTCAAACTAGAGGTCAAGAAACTTGTGATGACTGTGACTGATCTCAA 239
Query 240 TAGTGAGAGGAAAAAGGAGAAGAAGAAGTTGAAGAAGCAACCAAGCTGGATACACGCA 297
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 TAGTGAGAGGAAAAGGGAGAAGAAGAAGTTGAAGAAGCAACCAAACTGGATACACGCA 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 11790077001
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5