BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03550.1 Length=333 Score E Sequences producing significant alignments: (Bits) Value Ahg892266 jgi|Araly1|892266|Al_scaffold_0006_262 460 2e-129 > Ahg892266 jgi|Araly1|892266|Al_scaffold_0006_262 Length=303 Score = 460 bits (249), Expect = 2e-129 Identities = 282/298 (95%), Gaps = 2/298 (1%) Strand=Plus/Plus Query 1 ATGAACCTTCTCTGCGACATCATCGGGATACTTTACCACACGCCTCTTGGTTATCTCACC 60 ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGAACCTTCTCTGCAACACCATCGGGATACTTTACCACACGCCTCTTGGTTATCTCACC 60 Query 61 GAAGCAGAATTGAGCAAAGCTTCAAAGGATAT-GTGTGATCTGACACAAGCCGGTTTTAA 119 ||||||||||||||||||| ||| |||||| | || ||||||||||||||| |||||||| Sbjct 61 GAAGCAGAATTGAGCAAAGTTTCCAAGGAT-TCGTATGATCTGACACAAGCTGGTTTTAA 119 Query 120 CCTGGATTGGTTGCAGTCAAAGCTTGACATGGTTTCCTTGGAGAAGAAGACTTCTGAAGA 179 ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 120 GCTGGAGTGGTTGCAGTCAAAGCTTGACAAGGTTTCCTTGGAGAAGAAGACTTCTGAAGA 179 Query 180 ACGGATTCTGGAACTCAAACTAGAGGTCAAGAAACTCGTGATGACTGCGACTGATCTCAA 239 ||||||| |||||||||||||||||||||||||||| |||||||||| |||||||||||| Sbjct 180 ACGGATTGTGGAACTCAAACTAGAGGTCAAGAAACTTGTGATGACTGTGACTGATCTCAA 239 Query 240 TAGTGAGAGGAAAAAGGAGAAGAAGAAGTTGAAGAAGCAACCAAGCTGGATACACGCA 297 |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| Sbjct 240 TAGTGAGAGGAAAAGGGAGAAGAAGAAGTTGAAGAAGCAACCAAACTGGATACACGCA 297 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 11790077001 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5