BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03560.2
Length=1250
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892269 jgi|Araly1|892269|Al_scaffold_0006_265 1081 0.0
> Ahg892269 jgi|Araly1|892269|Al_scaffold_0006_265
Length=1437
Score = 1081 bits (585), Expect = 0.0
Identities = 692/742 (93%), Gaps = 14/742 (2%)
Strand=Plus/Plus
Query 382 GAGTTTTTGCAAGGCAATTCAGTTCAGAGACTAAGCGAGTTAACACCAAAGTCAATTTCT 441
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 290 GAGGTTTTGCAAGGCAATTCAGTTCAGAGACTAAGCGAGTTAACACCAAAGTCAATTTCT 349
Query 442 CTCTGTCTGATGATGATTCAGATGAGGAAACTGAAACTCAGGTTACTGAAGATTCAAAG- 500
|||||||||||||||||||||||||||||||| | | ||||||||||||||| |
Sbjct 350 CTCTGTCTGATGATGATTCAGATGAGGAAACT----C-C-GGTTACTGAAGATTC-TGGC 402
Query 501 AAGCAGGAGCCTCC-ACCTCCTCCGTATGACCCTTTCAGCAAGAAACCGGCGATTGAGGA 559
|||| |||| ||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 403 AAGCCGGAG-TTCCTGCCTCCTCCTTATGACCCTTTCAGCAAGAAACCGGCGATTGAGGA 461
Query 560 ACCAGAGGATCCTAAGAATCTCCAAGAAATATTCCACAAGATGAGAACAGAGGGTTTTAC 619
||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||
Sbjct 462 ACCAGAGGATCCTAAGAATCTTCAAGAAATATTCCATAAGATGAAAACAGAGGGTTTTA- 520
Query 620 T-AATGAAGCTGTGAAAATGTTTGATGCGTTGTCTAAAGATGGCCGCACACATGAGGCGT 678
| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 521 TGAATGAAGCTGTGAAAATGTTCGATGCGTTGTCTAAAGACGGCCGCACACATGAGGCGC 580
Query 679 TAGAGCTCTTCTCTCAGATTAAAGATAAGAATCGAATGCCAGACGTGGTGGCTCATACTG 738
|||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 581 TAGAGCTCTTCTCTCAGATTAAAGATAAAAATCAAATGCCAGACGTGGTGGCTCATACTG 640
Query 739 CTATTGTTGAGGCCTATGCTAATGCAGGCCAGGCCAAGGAGACTCTCAAGGTTTTCATGC 798
|||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 641 CTATCGTTGAGGCGTATGCTAATGCAGGCCAGGCCAAAGAGACTCTCAAGGTTTTCATGC 700
Query 799 GTATGCTCGCCAGTGGTGTTTCGCCTAATGCCTATACGTATTCAGTTTTGATCAAAGGGC 858
||||||| ||| ||||||||||||||||||| ||||| ||| | ||||||||||||||||
Sbjct 701 GTATGCTTGCCTGTGGTGTTTCGCCTAATGCGTATACATATACTGTTTTGATCAAAGGGC 760
Query 859 TTGCAGCGGATGGTAAAACACATAAGGATGCGAAGAAGTACTTGTTGGAAATGATGGGAA 918
||||||||||||||| ||| | ||||||||||||||||||| |||| |||||||||||||
Sbjct 761 TTGCAGCGGATGGTAGAACGCTTAAGGATGCGAAGAAGTACGTGTTAGAAATGATGGGAA 820
Query 919 ATGGCATGAGCCCTAATGCTGCCACTTACACTGCAGTGTTTGAAGCTTTTGTAAGAGAGG 978
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 821 ATGGCATGAGCCCTAATGCTGCCACTTACACTTCAGTGTTTGAAGCTTTTGTAAAAGAGG 880
Query 979 GAAAAGAAGAATCAGCTAGAGAATTGTTGCAAGAAATGAAGGGAAAGGGTTTTGTGCCTG 1038
|||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 881 AAAAAGAGGAATCAGCTAGAGAATTGTTGCAAGAAATGAAGGGAAAGGGGTTTATGCCTG 940
Query 1039 ATGAGAAAGCTGTGAGAGAGGCTCT-CGAATATAAAAGAGGCCAAGTCTTTAGGACTGTC 1097
||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||
Sbjct 941 ATGAGAAAGCTGTGAGAGAGGCTCTTC-AATCTAAAAGAGGCCAAGTCTTTAGGACTGTC 999
Query 1098 ATCAACCTTTTATTTGATAAGT 1119
||||||||||||||||||||||
Sbjct 1000 ATCAACCTTTTATTTGATAAGT 1021
Score = 361 bits (195), Expect = 9e-99
Identities = 233/251 (93%), Gaps = 4/251 (2%)
Strand=Plus/Plus
Query 89 ATCCC-TCGGAAATCGCTTCTCAGCCTCAGATATCACTTCATCTGCGATTAACGGCGGCG 147
||||| | |||||||||| || ||| |||| ||||||||||||||||||||||||||| |
Sbjct 42 ATCCCGT-GGAAATCGCTGCTTAGCGTCAGTTATCACTTCATCTGCGATTAACGGCGGTG 100
Query 148 AGTTTTCTGATTT-CGTTAGAGCTTTCGCCTTTTATTCGTCTTCGTCCTCTTGGTGGTCG 206
||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 101 AGTTTTCTGATTTCCG-TAGAGCTTTCGCCTTTTATTCGTCTTCGTCTTCTTGGTGGTCG 159
Query 207 TCTCCCGATGATTTGACGGCGTCATCGAAGAGGAAAGAGAAGAAGACTACAGAGCGTTTC 266
||||||||||||||||||||| ||||||||||| ||||||||| |||||||| ||||||
Sbjct 160 TCTCCCGATGATTTGACGGCGGGATCGAAGAGGAGAGAGAAGAATACTACAGACCGTTTC 219
Query 267 TCTGCCGTGATTGACGCAGTCCATGACCGGAAACTCCCGCCGGAGCTACGTGGGCGGCGC 326
||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||
Sbjct 220 TCTGCCGTGATTGACGCAGTCCATGACCGGAAACTCCCGCCGGAGTTGCGTGGACGGCGC 279
Query 327 GATTTCGTAAG 337
|||||||||||
Sbjct 280 GATTTCGTAAG 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46700573325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5