BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03570.1 Length=1673 Score E Sequences producing significant alignments: (Bits) Value Ahg487136 jgi|Araly1|487136|fgenesh2_kg.6__270__AT5G03570.1 2499 0.0 Ahg901763 jgi|Araly1|901763|Al_scaffold_0004_2413 1079 0.0 > Ahg487136 jgi|Araly1|487136|fgenesh2_kg.6__270__AT5G03570.1 Length=1572 Score = 2499 bits (1353), Expect = 0.0 Identities = 1515/1591 (95%), Gaps = 20/1591 (1%) Strand=Plus/Plus Query 17 CAGATTCAATTGATATTCAGAGGAAAGAATCAAAGTAGTCAGAAGAAATGGAGGAGGAAA 76 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1 CAGATTCAATTGATATTCAGAGGAAAGAATCAAAGTAGTCTGAAGAAATGGAGGAGGAGA 60 Query 77 CAGAAACTAGGGTTTTCCTATCAAACGAACAACATCaagaagaagaagaagaagaagaag 136 |||||||||||||||| ||||||| ||||||||||| |||||| Sbjct 61 CAGAAACTAGGGTTTTTCTATCAAGCGAACAACATC------------------AAGAAG 102 Query 137 aagaGCCGTCGTTGCCACGTTCCATGGTGATCTCTCTCTATCTCGGCTATTTTCTTGCTC 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103 AAGAGCCGTCGTTGCCACGTTCCATGGTGATCTCTCTCTATCTCGGCTATTTTCTTGCTC 162 Query 197 GATGGGGTGCAAGAACTTGGGAATTCTCTGTTGCTCTGTATATGATTTACCTCTGGCCAA 256 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 GATGGGGAGCAAGAACTTGGGAATTCTCTGTTGCTCTGTATATGATTTACCTCTGGCCAA 222 Query 257 ACTCTCTGTTTCTCACTGCGATGTACGGTGTTGTAGAATCCGGTTCCGCCACTCTTTTCG 316 ||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||| | Sbjct 223 ACTCTCTGTTTCTCACTGCAATGTACGGTGTTGTAGAATCCGGTTCTGCCGCTATTTTTG 282 Query 317 GTCCCATTGTAGGCCAAATGATTGATGGAATGAGCTATGTTAAAGTTCTTAGACTCTGGC 376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 283 GTCCCATTGTAGGCCAAATGATTGATGGAATGAGCTATGTTAAAGTTCTTAGACTCTGGC 342 Query 377 TTGTAACTCAAAACCTCTCCTTCATTGTTGCTGGTGGTGCAGTCGTTGCTTTGCTGGTAG 436 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 343 TTGTAACTCAAAACCTCTCCTTCATTGTTGCGGGTGGTGCAGTCGTTGCTTTGCTTCTAG 402 Query 437 TACCTGATCTTAAGTCTCAGAATTTCCCTGTTTTCGCAACATTGGTCGTGTTGACGAATC 496 | |||||||||| |||||| ||||||||||||||||||| ||||||||||||||| ||| Sbjct 403 TTCCTGATCTTAGGTCTCATAATTTCCCTGTTTTCGCAATATTGGTCGTGTTGACTAATG 462 Query 497 TTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCAGGCACCGTTTTGATCGAACGAGACT 556 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 463 TTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCAGGCACCATTTTGATCGAACGAGACT 522 Query 557 GGGTTGTTGTTATGTCGGAAGGTCATTCACCAGCGGTTTTAACAAGAATGAACTCTGTTA 616 ||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 523 GGGTTGTGGTTATGTCGGAAGGTCATTCACCAACAGTTTTAACAAGAATGAACTCTGTTA 582 Query 617 TTAGAGGCATTGACTTGAGCTCTAAGCTACTGTCTCCGGTTATAACTGGTTTGATCATTA 676 | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 583 TCAGAGGCATTGACTTGAGCTCGAAGCTACTGTCTCCGGTTATAACTGGTTTGATCATTA 642 Query 677 GCTTTGTATCTCTTAGAGCATCAGCTATCACATTTGCAGCTTGGGCTACTATTACCGTGT 736 ||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 643 GCTTTGTATCTCTTAAAGCATCAGCTATAACATTTGCAGCTTGGGCTACTATAACCGTGT 702 Query 737 GGATTGAGTATTGGCTCTTTATCTCTGTGTATAACGGTGTTCCTGCTATAGTACAAAGCG 796 || ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| Sbjct 703 GGGTTGAGTATTGGCTCTTTATCTCTGTGTATAACGGTGTTCCTGCGATAGTTCAAAGCG 762 Query 797 ATGAGAGAAGGAGTTTAAGGTCGTCTCAATCGCAAGCGGAAGAGACAGATAGTGCATCTA 856 ||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||| Sbjct 763 ATGAGAGAAGGAGATTAAGGTTGTCTCAATCGCAAGGGGAAGAGACAGATAGTGCATCTA 822 Query 857 GTTTTTATGTTCCTCTTTTACACGAAGAGGAGTCTTATAGGAA-TACGCAAAGTAGAAGC 915 ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| Sbjct 823 GTTTTTATGTTCCTCTTTTACACGAAGAGGAGTCTTATAGGAAAT-CGCAAAGTAGAAGC 881 Query 916 AGAATCTTAAGGATTCTTGAGAGAATCTCTGAGTCTTCTTTTGTTAGCGCGTGGAGGAAT 975 ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 882 GGAATCTTTAGGATTCTTGAGAGAATCTCTGAGTCTTCTTTTGTTAGCGCATGGAGGAAT 941 Query 976 TATCTCAATCAAGAGATTGTGCTCCCTGGAGTTTCTCTAGCTCTATTGTTCTTCACTGTC 1035 ||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| Sbjct 942 TATCTCAATCAAGAGATTGTGCTCCCTGGAGTTGCTCTAGCTCTCTTGTTCTTCACCGTC 1001 Query 1036 CTCAGCTTTGGAACACTGATGACGGCGACATTGGAGTGGAAAGGGATACCTACTTATATC 1095 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1002 CTCAGCTTTGGAACATTGATGACGGCGACATTGGAGTGGAAAGGGATACCTACTTATATC 1061 Query 1096 ATTGGTATAGGCAGAGGAATCAGCGCAGGTGTTGGTCTAGCTGCTACCGTTTTGTACCCT 1155 ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 1062 ATTGGTATAGGCAGAGGAATCAGTGCAGGTGTTGGACTAGCTGCTACCGTTTTGTACCCT 1121 Query 1156 CTCATGCAATCCCGTATCTCACCTCTCAGAACCGGAGTCTGGTCCTTTTGGTCTCAGTGG 1215 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1122 CTCATGCAATCCCGTATCTCACCTCTCAGAACCGGACTCTGGTCCTTTTGGTCTCAGTGG 1181 Query 1216 ACCTGTCTTTTGGTGTGTGTTGGATCAATTTGGGTTGAGAAGGAGAAAATAGCATCCTAC 1275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1182 ACCTGTCTTTTGGTGTGTGTTGGATCAATTTGGGTTGAGAAGGAGAAAATAGCATCATAC 1241 Query 1276 ATGCTCATGGCTGGAGTTGCTGCTTCTAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTA 1335 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1242 ATGCTCATGGCTGGTGTTGCTGCTTCTAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTA 1301 Query 1336 ATCCAGCAAATGCAGGATCTTGTTCCGGAATCGGACCGTTGTGTGGTTGGAGGTGTTCAG 1395 ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1302 ATCCAACAAATGCAGGATCTTGTTCCGGAATCCGACCGTTGTGTGGTTGGAGGTGTTCAG 1361 Query 1396 AACTCGTTGCAATCGGCTCTTGACTTGATGGCTAATCTTTTGGGTATCATTGTATCTAAT 1455 ||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1362 AACTCATTGCAAGCGGCTCTTGCCTTGATGGCTAATCTTTTGGGTATCATTGTATCTAAT 1421 Query 1456 CCCAAGGATTTTTGGATGTTGACGTTGATCTCATTTGCTACGGTTTCGTTAGCCGGAATA 1515 || ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1422 CCTAAGGATTTTTGGATGTTGACGTTGATCTCATTTGCTACGGTTTCGTTTGCCGGAATG 1481 Query 1516 CTCTATACGATTCACCTCTACCGTATTCGAAAACATCTATTTCACTTGGAGAAGATTCCC 1575 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1482 CTCTATACGATTCACCTCTACCGTATTCGAAAACATCTATTTCACTTGGAGAAGATTCCC 1541 Query 1576 TTATTGAACAACTTTTTTGCTTCATGAAAAA 1606 ||||||||||||||| ||| ||||||||||| Sbjct 1542 TTATTGAACAACTTTCTTGTTTCATGAAAAA 1572 > Ahg901763 jgi|Araly1|901763|Al_scaffold_0004_2413 Length=1578 Score = 1079 bits (584), Expect = 0.0 Identities = 1166/1439 (81%), Gaps = 72/1439 (5%) Strand=Plus/Plus Query 184 TATTTTCTTGCTCGATGGGGTGCAAGAACTTGGGAATTCTCTGTTGCTCTGTATATGATT 243 ||||||||||| ||||| |||| ||||| |||||||||||||||||| |||||||||| Sbjct 136 TATTTTCTTGCAAGATGGAGTGCCAGAACATGGGAATTCTCTGTTGCTTTGTATATGATC 195 Query 244 TACCT-CTGGCCAAACTCTCTGTTTCTCA-CTGCGATGTACGGTGTTGTAGAATCCGGTT 301 | || ||||||||||||||| |||| | | ||||| || |||| | ||||||| |||| Sbjct 196 CA-CTGGTGGCCAAACTCTCTGCTTCT-AGCCGCGATTTATGGTGCTATAGAATCTGGTT 253 Query 302 C--C-GCCACTCTTTTCGGTCCCATTGTAGGCCAAAT-GATTGATGGAAT-GAGCTATGT 356 | | | || | |||| ||||||||||| || | ||| | | || ||||| || |||||| Sbjct 254 CTACTG-CAAT-TTTT-GGTCCCATTGTGGGGC-AATGGGTCGAGGGAATGGA-CTATGT 308 Query 357 TAAAGTTCTTAGACTCTGGCT--TGTAACTCAAAACCTCTCCTTCATTGTTGCTGGTGGT 414 ||||||||| ||||||||||| ||| | || |||||||||| || | ||||||||||| Sbjct 309 TAAAGTTCTCAGACTCTGGCTCCTGT-TC-CAGAACCTCTCCTACACTATTGCTGGTGGT 366 Query 415 GCAGTCGTTGCTTTGCTGGTAG-TACCTGATCTTAAGTCTCAGAATTTCCCTGT-TTTCG 472 |||||| | ||| || ||| | || ||||||||||| | |||| || | || ||| | Sbjct 367 GCAGTCATCAAGTTGTTGCTAGTTTCC-GATCTTAAGTCCCGGAATCTCGCGGTGTTT-G 424 Query 473 CAA-CATTGGTCGTGTTGACGAATCTTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCA 531 ||| | ||||| ||||| |||||| || |||||||||||||||| || || |||||||| Sbjct 425 CAATC-TTGGTTGTGTTAACGAATGTTGCTGGCGCCATTGGAGTTCTTTCGACTCTTGCT 483 Query 532 GGCACCGTTTTGATCGAACGAGACTGGGTTGTTGTTATGTCGGAAGGTCATTCACCAGCG 591 |||||| || |||||||||||||||||| ||| |||||||| ||||||||| ||||||| Sbjct 484 GGCACCATTCTGATCGAACGAGACTGGGCTGTGGTTATGTCAGAAGGTCATCCACCAGCA 543 Query 592 GTTTTAACAAGAATGAACTCTGTTATTAGAGGCATTGACTTGAGCTCTAAGCTACTGTCT 651 || || ||||||||||| ||||| ||||| |||||||| |||||||| ||| || | ||| Sbjct 544 GTATTGACAAGAATGAATTCTGTCATTAGGGGCATTGATTTGAGCTCCAAGTTATTTTCT 603 Query 652 CCGGTTATAACTGGTTTGATCATTAGCTTTGTATCTCTT-AGAGCATCAGCTATCACATT 710 || || || |||||| ||||||| || ||||| || ||| || || ||||| || || || Sbjct 604 CCAGTCATCACTGGTCTGATCATCAGTTTTGTCTCACTTAAG-GCGTCAGCGATAACTTT 662 Query 711 TGCAGCTTGGGCTACTATTACCG-TGTGGATTGAGTATTGGCTCTTTATCTCTGTGTATA 769 |||||||||||| ||||| || | | ||| |||| ||||||||||| || || || |||| Sbjct 663 TGCAGCTTGGGCCACTATAACAGCT-TGGGTTGAATATTGGCTCTTCATTTCAGTTTATA 721 Query 770 ACGGTGTTCCTGCTATAGTACAAAGCGATGAGAGAAGGAGT-TTAAGGT--CGTCTCAAT 826 ||||||||||| |||| || |||| |||||||| ||| | || | | || ||| Sbjct 722 GTGGTGTTCCTGCGATAGCACGAAGCAATGAGAGACGGA-TCTTGCGTTCCCG-GACAA- 778 Query 827 CGCAAGCGGAA-GAGACAGATAGTGCATCTAGTTT-T-TATGT--TCCT-CTTTTACACG 880 ||||| ||| || |||| | |||| || |||| | ||| | | || | ||| | Sbjct 779 AGCAAGTAGAAGGA-ACAG--A-TGCACCT-GTTTCTGTATCTAATGCTCCGGGAACA-G 832 Query 881 AAGAGGAG-TCTTA-TAGGAATACGCA--AAGTAGAAGCAGAAT-CTTAAGGATTCTTGA 935 | || ||| || || | |||| | || |||||| | |||| | || ||||||| | Sbjct 833 AGGA-GAGTTC-TACT-GGAA-CCCCACCGTGTAGAACCGGAATCCGGAA-GATTCTTAA 887 Query 936 GAGAATCTCTGAGTCTTCTTTTGTTAGCGCGTGGAGGAAT-TATCTCAATCAAG-AGATT 993 ||| | || |||| ||||||||| |||| |||| |||| ||| ||||||||| || || Sbjct 888 TAGAGTATCCAAGTCCTCTTTTGTTGGCGCATGGA-GAATATATTTCAATCAAGAAG-TT 945 Query 994 GTGCTCCCTGGAGTTTCTCTAGCTCTATTGTTCTTCACTGTCCTCAGCTTTGGAACACTG 1053 || ||||| || |||||||||||||| ||||||||||| |||||||||||||||||| || Sbjct 946 GTACTCCCCGGGGTTTCTCTAGCTCTCTTGTTCTTCACCGTCCTCAGCTTTGGAACATTG 1005 Query 1054 ATGACGGCGACATTGGAGTGGAAAGGGATACCTACTTATATCATTGGTATAGGCAGAGGA 1113 |||||||| |||||| ||||| ||||||||||||| |||||||| ||||||||||| ||| Sbjct 1006 ATGACGGCTACATTGCAGTGGGAAGGGATACCTACATATATCATCGGTATAGGCAGGGGA 1065 Query 1114 ATCAGCGC-AGGTGTTGGTCTAGCTGCTACCGTT-TTGTACCCTCTCATGCAATCCCGTA 1171 || || || | | ||||| ||| | |||| | || |||| || || |||||||||||| Sbjct 1066 ATAAGTGCAACG-GTTGGACTAACGGCTA-CATTAGTGTATCCGCTAATGCAATCCCGTC 1123 Query 1172 TCTCACCTCTCAGAACCGGAGTCTGGTCCTTTTGGTCTCAGTGGACCTGTCTTTTGGTGT 1231 | ||| | || |||||||| |||||||||| ||||||||||||| ||| |||||||| | Sbjct 1124 TGTCAACGCTGAGAACCGGTCTCTGGTCCTTCTGGTCTCAGTGGAGCTGCCTTTTGGTCT 1183 Query 1232 GTGTTGGATCAATTTGGGTTGAGAAGGAGAAAATAGCATCCTACATGCTCATGGCTGGAG 1291 | |||||||| || |||||| | ||||| ||||||||||| |||||||| |||||||||| Sbjct 1184 GCGTTGGATCGATATGGGTTAAAAAGGATAAAATAGCATCTTACATGCTAATGGCTGGAG 1243 Query 1292 TTGCTGCTTCTAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTAATCCAGCAAATGCAGG 1351 |||||||||| |||||||| ||||||||||| |||||| | || ||||| |||||||||| Sbjct 1244 TTGCTGCTTCAAGGCTTGGCTTGTGGATGTTTGATCTTTCCGTCATCCAACAAATGCAGG 1303 Query 1352 ATCTTGTTCCGGAATCGGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCGTTGCAATCGG 1411 |||||||| | ||||| |||||||||||||||||||||||||||||||| ||||||||| Sbjct 1304 ATCTTGTTTCAGAATCCGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCACTGCAATCGG 1363 Query 1412 CTCTTGACTTGATGGC-TAATCTTTTGGGTATCATTGTATCTAATCCCAAGGATTTTTGG 1470 |||||||||||||||| || ||| || ||||||||||| || ||||| |||||||| ||| Sbjct 1364 CTCTTGACTTGATGGCATA-TCTATTAGGTATCATTGTCTCCAATCCAAAGGATTTCTGG 1422 Query 1471 ATGTTGACGTTGATCTCATT-TGCTACGGTTTCGTTAGCCGGAATACTCTATACGATTCA 1529 || ||||||||||||||||| | | || || |||||||| ||||| |||||||| ||||| Sbjct 1423 ATATTGACGTTGATCTCATTCTCC-ACTGTGTCGTTAGCAGGAATGCTCTATACAATTCA 1481 Query 1530 CCTCTACCGTATTCGAAA--ACATCTATTTCACTTGGAGAAGATTCCCTTATTGAACAA 1586 |||||||| ||| |||| |||| | |||||||| ||||||||||| || |||||||| Sbjct 1482 TCTCTACCGGATTAGAAACCACAT-T-TTTCACTTTGAGAAGATTCCTTTGTTGAACAA 1538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62734633515 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5