BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03570.1
Length=1673
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487136 jgi|Araly1|487136|fgenesh2_kg.6__270__AT5G03570.1 2499 0.0
Ahg901763 jgi|Araly1|901763|Al_scaffold_0004_2413 1079 0.0
> Ahg487136 jgi|Araly1|487136|fgenesh2_kg.6__270__AT5G03570.1
Length=1572
Score = 2499 bits (1353), Expect = 0.0
Identities = 1515/1591 (95%), Gaps = 20/1591 (1%)
Strand=Plus/Plus
Query 17 CAGATTCAATTGATATTCAGAGGAAAGAATCAAAGTAGTCAGAAGAAATGGAGGAGGAAA 76
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1 CAGATTCAATTGATATTCAGAGGAAAGAATCAAAGTAGTCTGAAGAAATGGAGGAGGAGA 60
Query 77 CAGAAACTAGGGTTTTCCTATCAAACGAACAACATCaagaagaagaagaagaagaagaag 136
|||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 61 CAGAAACTAGGGTTTTTCTATCAAGCGAACAACATC------------------AAGAAG 102
Query 137 aagaGCCGTCGTTGCCACGTTCCATGGTGATCTCTCTCTATCTCGGCTATTTTCTTGCTC 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 103 AAGAGCCGTCGTTGCCACGTTCCATGGTGATCTCTCTCTATCTCGGCTATTTTCTTGCTC 162
Query 197 GATGGGGTGCAAGAACTTGGGAATTCTCTGTTGCTCTGTATATGATTTACCTCTGGCCAA 256
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 163 GATGGGGAGCAAGAACTTGGGAATTCTCTGTTGCTCTGTATATGATTTACCTCTGGCCAA 222
Query 257 ACTCTCTGTTTCTCACTGCGATGTACGGTGTTGTAGAATCCGGTTCCGCCACTCTTTTCG 316
||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||| |
Sbjct 223 ACTCTCTGTTTCTCACTGCAATGTACGGTGTTGTAGAATCCGGTTCTGCCGCTATTTTTG 282
Query 317 GTCCCATTGTAGGCCAAATGATTGATGGAATGAGCTATGTTAAAGTTCTTAGACTCTGGC 376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 283 GTCCCATTGTAGGCCAAATGATTGATGGAATGAGCTATGTTAAAGTTCTTAGACTCTGGC 342
Query 377 TTGTAACTCAAAACCTCTCCTTCATTGTTGCTGGTGGTGCAGTCGTTGCTTTGCTGGTAG 436
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 343 TTGTAACTCAAAACCTCTCCTTCATTGTTGCGGGTGGTGCAGTCGTTGCTTTGCTTCTAG 402
Query 437 TACCTGATCTTAAGTCTCAGAATTTCCCTGTTTTCGCAACATTGGTCGTGTTGACGAATC 496
| |||||||||| |||||| ||||||||||||||||||| ||||||||||||||| |||
Sbjct 403 TTCCTGATCTTAGGTCTCATAATTTCCCTGTTTTCGCAATATTGGTCGTGTTGACTAATG 462
Query 497 TTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCAGGCACCGTTTTGATCGAACGAGACT 556
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 463 TTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCAGGCACCATTTTGATCGAACGAGACT 522
Query 557 GGGTTGTTGTTATGTCGGAAGGTCATTCACCAGCGGTTTTAACAAGAATGAACTCTGTTA 616
||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 523 GGGTTGTGGTTATGTCGGAAGGTCATTCACCAACAGTTTTAACAAGAATGAACTCTGTTA 582
Query 617 TTAGAGGCATTGACTTGAGCTCTAAGCTACTGTCTCCGGTTATAACTGGTTTGATCATTA 676
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 583 TCAGAGGCATTGACTTGAGCTCGAAGCTACTGTCTCCGGTTATAACTGGTTTGATCATTA 642
Query 677 GCTTTGTATCTCTTAGAGCATCAGCTATCACATTTGCAGCTTGGGCTACTATTACCGTGT 736
||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 643 GCTTTGTATCTCTTAAAGCATCAGCTATAACATTTGCAGCTTGGGCTACTATAACCGTGT 702
Query 737 GGATTGAGTATTGGCTCTTTATCTCTGTGTATAACGGTGTTCCTGCTATAGTACAAAGCG 796
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 703 GGGTTGAGTATTGGCTCTTTATCTCTGTGTATAACGGTGTTCCTGCGATAGTTCAAAGCG 762
Query 797 ATGAGAGAAGGAGTTTAAGGTCGTCTCAATCGCAAGCGGAAGAGACAGATAGTGCATCTA 856
||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 763 ATGAGAGAAGGAGATTAAGGTTGTCTCAATCGCAAGGGGAAGAGACAGATAGTGCATCTA 822
Query 857 GTTTTTATGTTCCTCTTTTACACGAAGAGGAGTCTTATAGGAA-TACGCAAAGTAGAAGC 915
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 823 GTTTTTATGTTCCTCTTTTACACGAAGAGGAGTCTTATAGGAAAT-CGCAAAGTAGAAGC 881
Query 916 AGAATCTTAAGGATTCTTGAGAGAATCTCTGAGTCTTCTTTTGTTAGCGCGTGGAGGAAT 975
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 882 GGAATCTTTAGGATTCTTGAGAGAATCTCTGAGTCTTCTTTTGTTAGCGCATGGAGGAAT 941
Query 976 TATCTCAATCAAGAGATTGTGCTCCCTGGAGTTTCTCTAGCTCTATTGTTCTTCACTGTC 1035
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||
Sbjct 942 TATCTCAATCAAGAGATTGTGCTCCCTGGAGTTGCTCTAGCTCTCTTGTTCTTCACCGTC 1001
Query 1036 CTCAGCTTTGGAACACTGATGACGGCGACATTGGAGTGGAAAGGGATACCTACTTATATC 1095
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 CTCAGCTTTGGAACATTGATGACGGCGACATTGGAGTGGAAAGGGATACCTACTTATATC 1061
Query 1096 ATTGGTATAGGCAGAGGAATCAGCGCAGGTGTTGGTCTAGCTGCTACCGTTTTGTACCCT 1155
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 1062 ATTGGTATAGGCAGAGGAATCAGTGCAGGTGTTGGACTAGCTGCTACCGTTTTGTACCCT 1121
Query 1156 CTCATGCAATCCCGTATCTCACCTCTCAGAACCGGAGTCTGGTCCTTTTGGTCTCAGTGG 1215
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1122 CTCATGCAATCCCGTATCTCACCTCTCAGAACCGGACTCTGGTCCTTTTGGTCTCAGTGG 1181
Query 1216 ACCTGTCTTTTGGTGTGTGTTGGATCAATTTGGGTTGAGAAGGAGAAAATAGCATCCTAC 1275
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1182 ACCTGTCTTTTGGTGTGTGTTGGATCAATTTGGGTTGAGAAGGAGAAAATAGCATCATAC 1241
Query 1276 ATGCTCATGGCTGGAGTTGCTGCTTCTAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTA 1335
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 ATGCTCATGGCTGGTGTTGCTGCTTCTAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTA 1301
Query 1336 ATCCAGCAAATGCAGGATCTTGTTCCGGAATCGGACCGTTGTGTGGTTGGAGGTGTTCAG 1395
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1302 ATCCAACAAATGCAGGATCTTGTTCCGGAATCCGACCGTTGTGTGGTTGGAGGTGTTCAG 1361
Query 1396 AACTCGTTGCAATCGGCTCTTGACTTGATGGCTAATCTTTTGGGTATCATTGTATCTAAT 1455
||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1362 AACTCATTGCAAGCGGCTCTTGCCTTGATGGCTAATCTTTTGGGTATCATTGTATCTAAT 1421
Query 1456 CCCAAGGATTTTTGGATGTTGACGTTGATCTCATTTGCTACGGTTTCGTTAGCCGGAATA 1515
|| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1422 CCTAAGGATTTTTGGATGTTGACGTTGATCTCATTTGCTACGGTTTCGTTTGCCGGAATG 1481
Query 1516 CTCTATACGATTCACCTCTACCGTATTCGAAAACATCTATTTCACTTGGAGAAGATTCCC 1575
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1482 CTCTATACGATTCACCTCTACCGTATTCGAAAACATCTATTTCACTTGGAGAAGATTCCC 1541
Query 1576 TTATTGAACAACTTTTTTGCTTCATGAAAAA 1606
||||||||||||||| ||| |||||||||||
Sbjct 1542 TTATTGAACAACTTTCTTGTTTCATGAAAAA 1572
> Ahg901763 jgi|Araly1|901763|Al_scaffold_0004_2413
Length=1578
Score = 1079 bits (584), Expect = 0.0
Identities = 1166/1439 (81%), Gaps = 72/1439 (5%)
Strand=Plus/Plus
Query 184 TATTTTCTTGCTCGATGGGGTGCAAGAACTTGGGAATTCTCTGTTGCTCTGTATATGATT 243
||||||||||| ||||| |||| ||||| |||||||||||||||||| ||||||||||
Sbjct 136 TATTTTCTTGCAAGATGGAGTGCCAGAACATGGGAATTCTCTGTTGCTTTGTATATGATC 195
Query 244 TACCT-CTGGCCAAACTCTCTGTTTCTCA-CTGCGATGTACGGTGTTGTAGAATCCGGTT 301
| || ||||||||||||||| |||| | | ||||| || |||| | ||||||| ||||
Sbjct 196 CA-CTGGTGGCCAAACTCTCTGCTTCT-AGCCGCGATTTATGGTGCTATAGAATCTGGTT 253
Query 302 C--C-GCCACTCTTTTCGGTCCCATTGTAGGCCAAAT-GATTGATGGAAT-GAGCTATGT 356
| | | || | |||| ||||||||||| || | ||| | | || ||||| || ||||||
Sbjct 254 CTACTG-CAAT-TTTT-GGTCCCATTGTGGGGC-AATGGGTCGAGGGAATGGA-CTATGT 308
Query 357 TAAAGTTCTTAGACTCTGGCT--TGTAACTCAAAACCTCTCCTTCATTGTTGCTGGTGGT 414
||||||||| ||||||||||| ||| | || |||||||||| || | |||||||||||
Sbjct 309 TAAAGTTCTCAGACTCTGGCTCCTGT-TC-CAGAACCTCTCCTACACTATTGCTGGTGGT 366
Query 415 GCAGTCGTTGCTTTGCTGGTAG-TACCTGATCTTAAGTCTCAGAATTTCCCTGT-TTTCG 472
|||||| | ||| || ||| | || ||||||||||| | |||| || | || ||| |
Sbjct 367 GCAGTCATCAAGTTGTTGCTAGTTTCC-GATCTTAAGTCCCGGAATCTCGCGGTGTTT-G 424
Query 473 CAA-CATTGGTCGTGTTGACGAATCTTTCTGGCGCCATTGGAGTACTCTCTACTCTTGCA 531
||| | ||||| ||||| |||||| || |||||||||||||||| || || ||||||||
Sbjct 425 CAATC-TTGGTTGTGTTAACGAATGTTGCTGGCGCCATTGGAGTTCTTTCGACTCTTGCT 483
Query 532 GGCACCGTTTTGATCGAACGAGACTGGGTTGTTGTTATGTCGGAAGGTCATTCACCAGCG 591
|||||| || |||||||||||||||||| ||| |||||||| ||||||||| |||||||
Sbjct 484 GGCACCATTCTGATCGAACGAGACTGGGCTGTGGTTATGTCAGAAGGTCATCCACCAGCA 543
Query 592 GTTTTAACAAGAATGAACTCTGTTATTAGAGGCATTGACTTGAGCTCTAAGCTACTGTCT 651
|| || ||||||||||| ||||| ||||| |||||||| |||||||| ||| || | |||
Sbjct 544 GTATTGACAAGAATGAATTCTGTCATTAGGGGCATTGATTTGAGCTCCAAGTTATTTTCT 603
Query 652 CCGGTTATAACTGGTTTGATCATTAGCTTTGTATCTCTT-AGAGCATCAGCTATCACATT 710
|| || || |||||| ||||||| || ||||| || ||| || || ||||| || || ||
Sbjct 604 CCAGTCATCACTGGTCTGATCATCAGTTTTGTCTCACTTAAG-GCGTCAGCGATAACTTT 662
Query 711 TGCAGCTTGGGCTACTATTACCG-TGTGGATTGAGTATTGGCTCTTTATCTCTGTGTATA 769
|||||||||||| ||||| || | | ||| |||| ||||||||||| || || || ||||
Sbjct 663 TGCAGCTTGGGCCACTATAACAGCT-TGGGTTGAATATTGGCTCTTCATTTCAGTTTATA 721
Query 770 ACGGTGTTCCTGCTATAGTACAAAGCGATGAGAGAAGGAGT-TTAAGGT--CGTCTCAAT 826
||||||||||| |||| || |||| |||||||| ||| | || | | || |||
Sbjct 722 GTGGTGTTCCTGCGATAGCACGAAGCAATGAGAGACGGA-TCTTGCGTTCCCG-GACAA- 778
Query 827 CGCAAGCGGAA-GAGACAGATAGTGCATCTAGTTT-T-TATGT--TCCT-CTTTTACACG 880
||||| ||| || |||| | |||| || |||| | ||| | | || | ||| |
Sbjct 779 AGCAAGTAGAAGGA-ACAG--A-TGCACCT-GTTTCTGTATCTAATGCTCCGGGAACA-G 832
Query 881 AAGAGGAG-TCTTA-TAGGAATACGCA--AAGTAGAAGCAGAAT-CTTAAGGATTCTTGA 935
| || ||| || || | |||| | || |||||| | |||| | || ||||||| |
Sbjct 833 AGGA-GAGTTC-TACT-GGAA-CCCCACCGTGTAGAACCGGAATCCGGAA-GATTCTTAA 887
Query 936 GAGAATCTCTGAGTCTTCTTTTGTTAGCGCGTGGAGGAAT-TATCTCAATCAAG-AGATT 993
||| | || |||| ||||||||| |||| |||| |||| ||| ||||||||| || ||
Sbjct 888 TAGAGTATCCAAGTCCTCTTTTGTTGGCGCATGGA-GAATATATTTCAATCAAGAAG-TT 945
Query 994 GTGCTCCCTGGAGTTTCTCTAGCTCTATTGTTCTTCACTGTCCTCAGCTTTGGAACACTG 1053
|| ||||| || |||||||||||||| ||||||||||| |||||||||||||||||| ||
Sbjct 946 GTACTCCCCGGGGTTTCTCTAGCTCTCTTGTTCTTCACCGTCCTCAGCTTTGGAACATTG 1005
Query 1054 ATGACGGCGACATTGGAGTGGAAAGGGATACCTACTTATATCATTGGTATAGGCAGAGGA 1113
|||||||| |||||| ||||| ||||||||||||| |||||||| ||||||||||| |||
Sbjct 1006 ATGACGGCTACATTGCAGTGGGAAGGGATACCTACATATATCATCGGTATAGGCAGGGGA 1065
Query 1114 ATCAGCGC-AGGTGTTGGTCTAGCTGCTACCGTT-TTGTACCCTCTCATGCAATCCCGTA 1171
|| || || | | ||||| ||| | |||| | || |||| || || ||||||||||||
Sbjct 1066 ATAAGTGCAACG-GTTGGACTAACGGCTA-CATTAGTGTATCCGCTAATGCAATCCCGTC 1123
Query 1172 TCTCACCTCTCAGAACCGGAGTCTGGTCCTTTTGGTCTCAGTGGACCTGTCTTTTGGTGT 1231
| ||| | || |||||||| |||||||||| ||||||||||||| ||| |||||||| |
Sbjct 1124 TGTCAACGCTGAGAACCGGTCTCTGGTCCTTCTGGTCTCAGTGGAGCTGCCTTTTGGTCT 1183
Query 1232 GTGTTGGATCAATTTGGGTTGAGAAGGAGAAAATAGCATCCTACATGCTCATGGCTGGAG 1291
| |||||||| || |||||| | ||||| ||||||||||| |||||||| ||||||||||
Sbjct 1184 GCGTTGGATCGATATGGGTTAAAAAGGATAAAATAGCATCTTACATGCTAATGGCTGGAG 1243
Query 1292 TTGCTGCTTCTAGGCTTGGTTTGTGGATGTTCGATCTTGCGGTAATCCAGCAAATGCAGG 1351
|||||||||| |||||||| ||||||||||| |||||| | || ||||| ||||||||||
Sbjct 1244 TTGCTGCTTCAAGGCTTGGCTTGTGGATGTTTGATCTTTCCGTCATCCAACAAATGCAGG 1303
Query 1352 ATCTTGTTCCGGAATCGGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCGTTGCAATCGG 1411
|||||||| | ||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1304 ATCTTGTTTCAGAATCCGACCGTTGTGTGGTTGGAGGTGTTCAGAACTCACTGCAATCGG 1363
Query 1412 CTCTTGACTTGATGGC-TAATCTTTTGGGTATCATTGTATCTAATCCCAAGGATTTTTGG 1470
|||||||||||||||| || ||| || ||||||||||| || ||||| |||||||| |||
Sbjct 1364 CTCTTGACTTGATGGCATA-TCTATTAGGTATCATTGTCTCCAATCCAAAGGATTTCTGG 1422
Query 1471 ATGTTGACGTTGATCTCATT-TGCTACGGTTTCGTTAGCCGGAATACTCTATACGATTCA 1529
|| ||||||||||||||||| | | || || |||||||| ||||| |||||||| |||||
Sbjct 1423 ATATTGACGTTGATCTCATTCTCC-ACTGTGTCGTTAGCAGGAATGCTCTATACAATTCA 1481
Query 1530 CCTCTACCGTATTCGAAA--ACATCTATTTCACTTGGAGAAGATTCCCTTATTGAACAA 1586
|||||||| ||| |||| |||| | |||||||| ||||||||||| || ||||||||
Sbjct 1482 TCTCTACCGGATTAGAAACCACAT-T-TTTCACTTTGAGAAGATTCCTTTGTTGAACAA 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62734633515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5