BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03580.1 Length=306 Score E Sequences producing significant alignments: (Bits) Value Ahg349641 jgi|Araly1|349641|fgenesh1_pg.C_scaffold_6000234 481 1e-135 > Ahg349641 jgi|Araly1|349641|fgenesh1_pg.C_scaffold_6000234 Length=309 Score = 481 bits (260), Expect = 1e-135 Identities = 290/305 (95%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 1 ATGAGCAACGATGATAATCACGGATCGTCTTCTTGTCCAAGAAAATTTACGAGTTTGTAT 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGAGCAACGATGATAATCACGGATCGTCTTCTTGTCCAAGCAAATTTACGAGTTTGTAT 60 Query 61 ATAGCAAATCTTGATGCCCAAGTCTCTGAAGAAATGTTGTTTCTGATGTTTTCGGATTTC 120 |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| Sbjct 61 ATAGCAAATCTTGATGCCCAGGTCTCTGAAGAAATGTTGATTCTGATGTTTTCGGATTTC 120 Query 121 GGAAAGGTTATAAGATCAGTTCTAGCAAAAGATTTTAGAGGAGAGTCGCGAGGATTTGCT 180 |||||| ||| |||||| ||||||||||| ||||||||||||||||| |||||||||||| Sbjct 121 GGAAAGATTAGAAGATCGGTTCTAGCAAAGGATTTTAGAGGAGAGTCACGAGGATTTGCT 180 Query 181 TTCATTGAGTTTGAAAGTGCGGATAGTGCTGGACGAGCCATGCTTCATATGGACGGAAGG 240 ||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||||| Sbjct 181 TTCATTGTGTTTGAAAACGCGGATAGTGCTGGACGAGCCATGCTTCATATGAACGGAAGG 240 Query 241 TTAATAGGTCAGAAGATTCTATGCGTTCAGAGGACACCCAAGGTCGAAGATGGTCGAGAC 300 |||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||||| Sbjct 241 TTAATAGGTCAGAAGATTCTATACGTTGAGAGGACACCCAAGGTCGAAGAAGGTCGAGAC 300 Query 301 ATATG 305 ||||| Sbjct 301 ATATG 305 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10759876098 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5