BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03580.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349641 jgi|Araly1|349641|fgenesh1_pg.C_scaffold_6000234 481 1e-135
> Ahg349641 jgi|Araly1|349641|fgenesh1_pg.C_scaffold_6000234
Length=309
Score = 481 bits (260), Expect = 1e-135
Identities = 290/305 (95%), Gaps = 0/305 (0%)
Strand=Plus/Plus
Query 1 ATGAGCAACGATGATAATCACGGATCGTCTTCTTGTCCAAGAAAATTTACGAGTTTGTAT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGAGCAACGATGATAATCACGGATCGTCTTCTTGTCCAAGCAAATTTACGAGTTTGTAT 60
Query 61 ATAGCAAATCTTGATGCCCAAGTCTCTGAAGAAATGTTGTTTCTGATGTTTTCGGATTTC 120
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 61 ATAGCAAATCTTGATGCCCAGGTCTCTGAAGAAATGTTGATTCTGATGTTTTCGGATTTC 120
Query 121 GGAAAGGTTATAAGATCAGTTCTAGCAAAAGATTTTAGAGGAGAGTCGCGAGGATTTGCT 180
|||||| ||| |||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 121 GGAAAGATTAGAAGATCGGTTCTAGCAAAGGATTTTAGAGGAGAGTCACGAGGATTTGCT 180
Query 181 TTCATTGAGTTTGAAAGTGCGGATAGTGCTGGACGAGCCATGCTTCATATGGACGGAAGG 240
||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 TTCATTGTGTTTGAAAACGCGGATAGTGCTGGACGAGCCATGCTTCATATGAACGGAAGG 240
Query 241 TTAATAGGTCAGAAGATTCTATGCGTTCAGAGGACACCCAAGGTCGAAGATGGTCGAGAC 300
|||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||||
Sbjct 241 TTAATAGGTCAGAAGATTCTATACGTTGAGAGGACACCCAAGGTCGAAGAAGGTCGAGAC 300
Query 301 ATATG 305
|||||
Sbjct 301 ATATG 305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10759876098
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5