BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03590.1
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892272 jgi|Araly1|892272|Al_scaffold_0006_268 1125 0.0
Ahg892274 jgi|Araly1|892274|Al_scaffold_0006_270 248 4e-65
> Ahg892272 jgi|Araly1|892272|Al_scaffold_0006_268
Length=696
Score = 1125 bits (609), Expect = 0.0
Identities = 668/697 (96%), Gaps = 2/697 (0%)
Strand=Plus/Plus
Query 1 ATGAAGCCCACTGCATTGTCTTGGAAACTCCCTTATGGTATCACTTTCCCCGGTAAACCT 60
|||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1 ATGAAGCCCAATGCAGTGTCTTGGAAACCCCCTTATGGTATCACTTTCCCCGGTAAACCT 60
Query 61 TCCGGCCGTTATTCTGATGGCCTTACCGCCACCGATTTTCTAGGGTCCGAAGTGTTTGAC 120
||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || |||
Sbjct 61 TCCGGCCGTTATTCTGATGGCCTTATCGCCACCGACTTTCTAGGGTCCGAAGTATTCGAC 120
Query 121 TCTCCGGTTGATCGATCGCCAAACATCTCTACTCAGGTGGGTTTCTTGGTTAACCTTGCC 180
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 121 TCTCCGGTTGATCGATCGCCAAACATCTCTACTCAGGTCGGTTTCTTGGTTAACCTCGCC 180
Query 181 CTTGCCCGCCGTGTCTACACTATCGACGGCGACCTTGCTTCCTCCTACGCTCTCCTCAGC 240
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 CTCGCCCGCCGTGTCTACACTATCGACGGCGACCTTGCTTCCTCTTACGCTCTCCTTAGC 240
Query 241 TACTCCGGCACCGACTATTATGGTTTCATCGACCAAAACCCTAATATGGCTGCCTACCCA 300
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 241 TACTCCGGCAGCGACTATTATGGTTTTATCGACCAAAACCCTAATATGGCTGCCTACCCA 300
Query 301 GCATTTGTAGAGTTCATCGTGGAAGATATACATTGCAACGAGTCATATAGCGATTTGGTG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCATTTGTAGAGTTCATCGTGGAAGATATACATTGCAACGAGTCATATAGCGATTTGGTG 360
Query 361 AGACTCCACAACGAGTCG-TTGAAGAAAGCCGTGGCCAAGCTTAACAAAGAGGACAAGTT 419
||||||||||| ||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 361 AGACTCCACAATGAG-GGATTGAAGAAAGTCGTGGCCAAGCTTAACAAAGAGGACAAGTT 419
Query 420 TAGGACTAAGGGGGACCGTTTTGTCATCGTTGATCTTCACAAAGCCTTCATGACCATCTT 479
|||||| |||||||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 420 TAGGACCAAGGGGGACCGTTTCGTCATCGTTGATCTTCACAAAGCCTTCATGGCCGTCTT 479
Query 480 AGAGAAAAAAGGGAACAAAAGGTTTAAAAGCCCGTTGAAGCCGTGCTGCGAAGGCGATTG 539
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 480 GGAGAAAAAAGGGAGCAAAAGGTTTAAAACCCCGTTGAAGCCGTGCTGCGAAGGCGATTG 539
Query 540 TGCACGTATGGATATGAAGGGTGCAAAGAAGTATACATTATGTAATGATCCAAAGTCTGC 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TGCACGTATGGATATGAAGGGTGCAAAGAAGTATACATTATGTAATGATCCAAAGTCTGC 599
Query 600 TTTCTTCTGGGATGAAATTAATCCAACTCAAGAAGGATGGAGATCGATTTACTCGCTATT 659
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 600 TTTCTTCTGGGATGAAATTAATCCAACTCAAGAAGTATGGAGATCGATTTACTCGCTATT 659
Query 660 AGGCAAATCTCTAACCGAGTCTTTGACCAAAGGGTAA 696
||||||||||||||||||||||||||| || ||||||
Sbjct 660 AGGCAAATCTCTAACCGAGTCTTTGACTAACGGGTAA 696
> Ahg892274 jgi|Araly1|892274|Al_scaffold_0006_270
Length=969
Score = 248 bits (134), Expect = 4e-65
Identities = 290/364 (80%), Gaps = 15/364 (4%)
Strand=Plus/Plus
Query 333 TTGCAACGAGTCATATAGCG-ATTTGGT-GAGACTCCACAACGAGTCGTTGAAGA-AAGC 389
||||||||||||| | || | | ||||| || ||| |||||| | | | |||| | |||
Sbjct 609 TTGCAACGAGTCACAAAGTGCA-TTGGTGGA-ACTACACAACAAATTGCTGAA-ACAAGT 665
Query 390 CGTGGCCAAGCTTAACAAAGAGGACAAGTTTAGGACTAAGGGGGACCGTTT-TGTCATCG 448
|||||||||||| ||| || || || | ||| || |||||| | | ||| | | |||
Sbjct 666 CGTGGCCAAGCTCAACGAACAGTCCAGGGTTATGAAAAAGGGGCAGCATTTCT-TTATCA 724
Query 449 TTGATCTTCACAAAGCCTTCATGACC-ATCTTAGAGAAAAAAGGGAACAAAAGGTTTAAA 507
||||| ||||||| ||||| |||||| ||||| |||| |||||||||||||| ||||||
Sbjct 725 TTGATATTCACAACGCCTTTATGACCGTTCTTA-AGAACAAAGGGAACAAAAGATTTAAA 783
Query 508 AGCCCGTTGAAGCCGTGCTGCGAAGGCGATTGTGCACGTATGGATATGAAGGGTGCA-AA 566
| ||| ||||| |||| |||||||| |||||| ||| | || || | |||| | ||
Sbjct 784 AATCCGATGAAGTCGTGTTGCGAAGGTTATTGTGGGCGT-TCGA-GTG-ACGGTG-AGAA 839
Query 567 GAAGTATACATTATGTAATGATCCAAAGTCTGCTTTCTTCTGGGATGAAATTAATCCAAC 626
| |||||| |||||| ||||||| |||||| ||||||| ||||||||| || | || ||
Sbjct 840 GTTGTATACGTTATGTGATGATCCTAAGTCTTCTTTCTTTTGGGATGAAGTTCACCCTAC 899
Query 627 TCAAGAAGGATGGAGATCGATTTACTCGCTATTAGGCAAATCTCTAACCGAGTCTTTGAC 686
|||||||||||||||||||||||||||| ||||||| ||| || ||||||||| ||||||
Sbjct 900 TCAAGAAGGATGGAGATCGATTTACTCGGTATTAGGGAAACCTTTAACCGAGTTTTTGAC 959
Query 687 CAAA 690
|||
Sbjct 960 TAAA 963
Score = 102 bits (55), Expect = 3e-21
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 28 CTCCCTTATGGTATCACTTTCCCCGGTAAACCTTCCGGCCGTTATTCTGATGGCCTTACC 87
|||||||| ||||||||||||||||||||||||||||||||||| | |||||| || |
Sbjct 109 CTCCCTTACGGTATCACTTTCCCCGGTAAACCTTCCGGCCGTTACTGTGATGGTCTCATA 168
Query 88 GCCACCGATTTTCTAG 103
||||||||||||||||
Sbjct 169 GCCACCGATTTTCTAG 184
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25580477307
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5