BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03600.1
Length=969
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892274 jgi|Araly1|892274|Al_scaffold_0006_270 1474 0.0
Ahg892272 jgi|Araly1|892272|Al_scaffold_0006_268 104 1e-21
> Ahg892274 jgi|Araly1|892274|Al_scaffold_0006_270
Length=969
Score = 1474 bits (798), Expect = 0.0
Identities = 912/969 (94%), Gaps = 0/969 (0%)
Strand=Plus/Plus
Query 1 ATGGGTTCAAACCAGCTTCTTCGACCAAGAAAAGTACCGAAGCTCTTTGTGTTCGGAGAT 60
||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||
Sbjct 1 ATGGGTTCAAACCAGCTTCTTGGACCAAGAAAAGTACCGAAACTCTTTGTATTCGGAGAT 60
Query 61 TCTTACGCGGATACGGGAAACACAAAGCGCGACACAGAGGCTTGGGCTATCCCTTACGGT 120
|||||||||||||| |||||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 61 TCTTACGCGGATACCGGAAACACGAAGCGCGACACCGAGGCTTGGGCCCTCCCTTACGGT 120
Query 121 ATCACTTTCCCCGGTAAACCTTCCGGCCGTTATTGTGATGGTCTCATAGCCACCGATTTT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 ATCACTTTCCCCGGTAAACCTTCCGGCCGTTACTGTGATGGTCTCATAGCCACCGATTTT 180
Query 181 CTAGAAAAAGTATTGGGGGCAGAATCACCGTACCTCTATAGAACTCACGGACGAGATAAA 240
||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 181 CTAGAAAAAGTGTTGGGGGCAGAATCACCGTACCTCTATAGAACTCACGGACGAAAGAAA 240
Query 241 GGGCTAAAAAGAGGAATGAATTTTGCGTTTGGGGGGTCCAAAATGTTGGACTCCTCTCCG 300
|||||||||| |||||||||||||| |||| ||||||||||||||| |||||||||
Sbjct 241 AAAATAAAAAGAGGCATGAATTTTGCGTTCGGGGCGTCCAAAATGTTGGAGTCCTCTCCG 300
Query 301 AATAGTCCATTCCCCAATATAACTGCTCAAGTGAATTTTTTGGTAGACCTTGTCCTCGCC 360
||||||||||||||||||||||||||||| |||||||| || |||||| ||||||||||
Sbjct 301 AATAGTCCATTCCCCAATATAACTGCTCAGGTGAATTTCTTAGTAGACTTTGTCCTCGCT 360
Query 361 GGCCGTGTCTACGGAGACATTACTCCCTCCGATGTTTCTCTCATCAGCTACGCTGGAGGC 420
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 361 GGCCGTGTCTACGGAGACATTACTCCCTCCGACGTTTCTCTCATCAGCTACGCCGGAGGC 420
Query 421 GACTATATTTATTACATCGACCAAAATCGTCCTGCCGCTGGCTTAAAAGCACTAGTAGAG 480
|||||||| |||||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 421 GACTATATCTATTACATCGACCAAAATCGCCCTGCCGCTGGCTTGAAAGCAATAGTAGAG 480
Query 481 AAAGTCGTGGATAATTTACGCGTTAATATGATAGTATTGGGTGGCCTGCTATTTAAGAAG 540
||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||
Sbjct 481 AAAGTCGTGGATAATTTACACGTTAATATGATAATATTGAGTGGCCTGCTATTTAAGAAG 540
Query 541 ATAGCAGTAACATCGCTGCAGCCGATCGGATGCCTTCCTTCTTACACCTCTGCATCCTCG 600
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 541 ATAGCAGTAACATCGCTGCAGCCGATCGGATGCCTCCCTTCTTACACCTCTGCATCGTCG 600
Query 601 TTCAAGAGTTGCAACGAGTCACAAAGTGCATTGGTGGAACTACACAACAAATTGTTGAAA 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 601 TTCAAGAGTTGCAACGAGTCACAAAGTGCATTGGTGGAACTACACAACAAATTGCTGAAA 660
Query 661 AAAGTGGTGGCCAAGCTCAACGAACAGTCCAGGGTTATGAAGAAGGAGCAGCATTTCTTT 720
|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 661 CAAGTCGTGGCCAAGCTCAACGAACAGTCCAGGGTTATGAAAAAGGGGCAGCATTTCTTT 720
Query 721 ATCATTGATATACACAACGCCTTCATGACCGTTATGAAGAACAAAGGGAGCAAAAGATTT 780
||||||||||| ||||||||||| ||||||||| | ||||||||||||| ||||||||||
Sbjct 721 ATCATTGATATTCACAACGCCTTTATGACCGTTCTTAAGAACAAAGGGAACAAAAGATTT 780
Query 781 AAAAACCCGATGAAGTCGTGTTGTGAAGGCTATTGTGGGCGTTCAAGTGACGGTGGGAAG 840
||||| ||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||
Sbjct 781 AAAAATCCGATGAAGTCGTGTTGCGAAGGTTATTGTGGGCGTTCGAGTGACGGTGAGAAG 840
Query 841 TTGTATACGTTATGTGATGATCCAAAGTCTTTTTTCTTTTGGGATGCAGTTCACCCTACT 900
||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||
Sbjct 841 TTGTATACGTTATGTGATGATCCTAAGTCTTCTTTCTTTTGGGATGAAGTTCACCCTACT 900
Query 901 CAAGAAGGATGGAGATCGATTTACTCGGTATTAGGGAACCCTTTAACCGACTTTTTGACC 960
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 901 CAAGAAGGATGGAGATCGATTTACTCGGTATTAGGGAAACCTTTAACCGAGTTTTTGACT 960
Query 961 AAACCGTAA 969
|||||||||
Sbjct 961 AAACCGTAA 969
> Ahg892272 jgi|Araly1|892272|Al_scaffold_0006_268
Length=696
Score = 104 bits (56), Expect = 1e-21
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 111 CCCTTACGGTATCACTTTCCCCGGTAAACCTTCCGGCCGTTATTGTGATGGTCTCATAGC 170
|||||| ||||||||||||||||||||||||||||||||||||| |||||| || || ||
Sbjct 30 CCCTTATGGTATCACTTTCCCCGGTAAACCTTCCGGCCGTTATTCTGATGGCCTTATCGC 89
Query 171 CACCGATTTTCTAG 184
|||||| |||||||
Sbjct 90 CACCGACTTTCTAG 103
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35988033648
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5