BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03610.1
Length=1424
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487140 jgi|Araly1|487140|fgenesh2_kg.6__274__AT5G03610.1 1958 0.0
> Ahg487140 jgi|Araly1|487140|fgenesh2_kg.6__274__AT5G03610.1
Length=1372
Score = 1958 bits (1060), Expect = 0.0
Identities = 1297/1404 (92%), Gaps = 46/1404 (3%)
Strand=Plus/Plus
Query 11 GGCTTACTATATAAAGCCGCAAAGACATTTTAGTGAGAACACAAATTCAATTCCAATtct 70
|||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 1 GGCTTACTATATAAAGCCACAAAGACA--TTAGTGAGAACACAAATTCAATTTCAATTCT 58
Query 71 caaagtgctctctttttaaaccaatctgctctcttccacttactctctctatctctctcc 130
|||||||||||| ||||||||| | | || || | | | || || | | || |
Sbjct 59 CAAAGTGCTCTC-TTTTAAACCCA--T-CT-TC-T---C-T-CT-TC-C-A---CT-T-- 98
Query 131 catctcgtttctTTTTTGGTCATTAAAAGAGAAACCT--TTGCTCTGAATCTTGAAAATG 188
| ||| | || ||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 99 -A-CTC-TCTC-TTTTTGGTCATTAAAAGAG-AACCTCGTTGCTCTGAATCTTGAAAATG 153
Query 189 GATTCTTTGATCAAACTCTTCTTCTGCC-TCTTTATCTTCTTATGT-ACTTCGCTCTTAT 246
|||| |||||||||||||||||||| || | ||| ||||||||| | |||||||| ||||
Sbjct 154 GATTATTTGATCAAACTCTTCTTCT-CCTTATTTCTCTTCTTAT-TCACTTCGCTGTTAT 211
Query 247 TTGGAGAAATCAATGGAGTGGAGGGTTCAAATCAAAATCATCACTTGTATC-CATTTAGG 305
||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 212 TTGGAGAAATCAATGGAGTGGAGGGTTCAAATCAAAATCATCACTTGTA-CGCATTTAGA 270
Query 306 CCAACGAAGCTCTTTGTGTTCGGAGATTCTTATGCCGATACCGGAAACATTAAAAAGGCT 365
|||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 271 CCAACGAAACTGTTTGTGTTCGGAGATTCTTATGCCGATACCGGAAACATTAGAAAGGCT 330
Query 366 TTCTCTAGCTCTTGGAAATTCCCTTACGGTATCACTTTCCCCGGAAAACCCGCTGGCCGT 425
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 331 CTCTCTAGCTCTTGGAAATTCCCTTACGGTATCACTTTCCCCGGAAAACCTGCTGGCCGT 390
Query 426 TTCTCCGATGGCCGTGTGGCAACAGATTTTCTAGCTAAATTTGTGGGGATAAAATCACCA 485
|||||||| || ||||| ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 391 TTCTCCGACGGACGTGTCGCAACAGATTTTCTAGCAAAATTCGTGGGGATAAAATCACCA 450
Query 486 ATCCCATACTTTTGGAAAGATTACGCGGGAAAGAAACGATTACAGTACGGAATGAATTTT 545
||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 451 ATCCCATACTTCTGGAAAGATTACGCGGGAAAGAAACGGTTGCAGTACGGAATGAATTTT 510
Query 546 GCGTACGGAGGAACAGGAGTGTTCAACACTCAAACTCCATTGCCTAACATGACAACTCAA 605
|| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 511 GCATACGGAGGAACAGGAGTGTTCAACACTCAAACTCCGTTGCCTAACATGACCACTCAA 570
Query 606 ATCGACATCTTCCAGAACATTCTCACCACCGGCGACATCTACTATCCTCCCGAGCTTACT 665
|| ||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 571 ATAGACATCTTCCAGAACCTTCTCACCGCCGGCGACATCTACTATCCTTCCGAGCTTACT 630
Query 666 TCATCCGTGGCTCTCGTCAGTGTCGCTGGCAACGACTACTCCAATTTCATCGCCCTAAAC 725
|| ||||| ||||| || || ||||||||||||||||||||||||||||||||| |||||
Sbjct 631 TCCTCCGTTGCTCTTGTTAGCGTCGCTGGCAACGACTACTCCAATTTCATCGCCTTAAAC 690
Query 726 CGCCCTGCCTCTGAATTCCCAGCATTCATAAAGCAAGTTGTGGATCAAACAGAGGTGAAT 785
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 CGCCCTGCCTCTGAATTTCCAGCATTCATAAAGCAAGTTGTGGATCAAACAGAGGTGAAT 750
Query 786 TTGAGACGGATCCACGCTTTGGGAGTGAAAAAGATTGCAGTACCATCCCTGCAACCGCTT 845
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 751 TTGAGGCGGATCCACGCTTTGGGAGTGAAAAAGATTGCAGTACCATCGCTGCAACCGCTC 810
Query 846 GGTTGTCTCCCTCCCTTCACATTCGTAACCTCGTTCCAGCGTTGCAACGAGACACAAAAC 905
|||||||||||||||||||| || ||| | ||||||||||||||||||||||||||||||
Sbjct 811 GGTTGTCTCCCTCCCTTCACCTTTGTATCATCGTTCCAGCGTTGCAACGAGACACAAAAC 870
Query 906 GCTTTAGTTAACCTCCACAACAACTTATTGCAGCAAGTTGTGGCAAAGCTCAATAACGAG 965
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 GCTCTAGTTAACCTCCACAACAACTTATTGCAGCAAGTTGTGGCAAAGCTCAATAACGAG 930
Query 966 ACTAAACAGTCGACTTTCATCATCCTTGATCTCTACAATGCTTTCTTGACTGTGTTCAAG 1025
|| || ||||| ||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 931 ACCAAGCAGTCTACTTTCATCATCCTTGATCTCTATAACGCTTTCTTGACTGTGTTCAAG 990
Query 1026 AACAAAGGATCTAATCCAGGGAGTACAAGGTTTGAGAGTCCATTAAAGCCGTGTTGCGTA 1085
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 991 AACAAAGGAGCTAATCCAGGGAGTACAAGGTTTGAGAGTCCATTAAAGCCGTGTTGCGTA 1050
Query 1086 GGTGTGAGCCGCGAGTATAACTGTGGAAGTGTGGATGAGAAGGGAGTGAAGAAGTATATT 1145
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1051 GGCGTGAGCCGCGAGTATAACTGTGGAAGTGTGGATGAGAAGGGAGTGAAGAAGTATATT 1110
Query 1146 GTATGTGATAATCCTAAAACTGCTTTCTTTTGGGATGGACTTCACCCTACAGAAGAAGGA 1205
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTATGTGATAATCCTAAATCTGCTTTCTTTTGGGATGGACTTCACCCTACAGAAGAAGGA 1170
Query 1206 TGGAGATCGGTTTACTCTGTTTTACGCGAAAGTCTTACCGCGTCTTTGATTAAAGCGTGA 1265
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1171 TGGAGATCGGTTTACTCTGTTTTACGCGAAAGTCTTACCGCGTCTTTGATCAAAGCGTGA 1230
Query 1266 GAAACAAAAGAA-ACACACA----TTT-TGCTTAGGTTT-TTTCTTATGAAGCTCAATGT 1318
||||||||| || ||||||| ||| | ||||||||| ||| || ||||| |||||||
Sbjct 1231 GAAACAAAAAAACACACACACACATTTCT-CTTAGGTTTCTTT-TTCTGAAGTTCAATGT 1288
Query 1319 TTGAGCGCTCTGTTCCTGTTTTCAGTATCTCTTCATTCATTTGTGTTTGT--GTGTTTAA 1376
|||||| || | || ||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1289 TTGAGCTCTTTATTTCTGTTTTCAGTATCTCTTCATTCATTTGTGTTTCTATGTGTTTAA 1348
Query 1377 AGATTGTGTGACTAATAAAATCTC 1400
||||||||||||||||||||||||
Sbjct 1349 AGATTGTGTGACTAATAAAATCTC 1372
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53250162510
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5