BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03620.1
Length=2301
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487141 jgi|Araly1|487141|fgenesh2_kg.6__275__AT5G03620.1 3592 0.0
> Ahg487141 jgi|Araly1|487141|fgenesh2_kg.6__275__AT5G03620.1
Length=2304
Score = 3592 bits (1945), Expect = 0.0
Identities = 2189/2308 (95%), Gaps = 11/2308 (0%)
Strand=Plus/Plus
Query 1 ATGGTTTCGAATCAGCGTGTACGGTTGTTTATGCTCTGTTTTTGCCTTGTTAACAACGCG 60
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||
Sbjct 1 ATGGTTTCGAATCAGCGTTTACGGTTGTTTATACTCTGTTTTTGCCTTGTTAACACCGCA 60
Query 61 GTTATAGCAGCCACGGAAGATGAAAACGTCGAGAGAAAGCCTTACATTGTGTACATGGGA 120
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 61 TTTATAGCAGCCACGGAAGATGAAAACAACGAGAGAAAGCCTTACATTGTGTACATGGGA 120
Query 121 GAGGCCACTGAGAATTCTCTTGTTGAAGCTGCAGAAAACCATCATAATCTTCTAATGACA 180
|| || ||||||||||||| ||||||||| || ||||||||||| ||||||||| |||||
Sbjct 121 GAAGCAACTGAGAATTCTCATGTTGAAGCCGCGGAAAACCATCACAATCTTCTATTGACA 180
Query 181 GTGATCGGAGACGAGAGCAAAGCAAGAGAACTGAAAATCTATAGCTATGGGAAGAATATC 240
||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||| ||
Sbjct 181 GTGATCGGAGATGAGAGCAAAGCAAGAGAAGTGAAAATGTATAGCTATGGGAAGAACATT 240
Query 241 AATGGATTTGTGGCAAGACTGTTTCCTCATGAAGCAGAGAAGCTATCACGGGAAGAAGGA 300
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 241 AATGGATTTGTGGCAAGACTTTTTCCTCATGAAGCAGAGAAGCTATCACGCGAAGAAGGA 300
Query 301 GTTGTATCGGTGTTTAAGAACACTCAAAGACAGCTTCACACGACAAGATCATGGGACTTT 360
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 301 GTTGTATCGGTGTTTAAGAACACTCAAAGACAGCTTCACACTACAAGATCATGGGATTTT 360
Query 361 CTAGGACTTGTTGAGTCTAAATACAAAAGAAGTGTTGGAATTGAAAGTAACATCATTGTG 420
||||||||||||||||||||||||||||||||||| | ||| || ||||| |||||||||
Sbjct 361 CTAGGACTTGTTGAGTCTAAATACAAAAGAAGTGTAGCAATAGAGAGTAATATCATTGTG 420
Query 421 GGAGTTCTTGACACAGGAATCGATGTTGAATCACCGAGCTTTAATGACAAAGGCGTTGGC 480
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 421 GGAGTTCTTGACACAGGAATCGATGTCGACTCACCGAGCTTTAATGACAAAGGCGTTGGC 480
Query 481 CCTCCTCCAGCTAAATGGAAAGGAAAATGTGTAACTGGAAATAACTTTACTCGTTGCAAT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CCTCCTCCAGCTAAATGGAAAGGAAAATGTGTAACTGGAAATAACTTTACTCGTTGCAAT 540
Query 541 AATAAAGTGATTGGAGCAAAGTACTTCCACATCCAATCA-GAAGGCCTTCCTGATGGCGA 599
|||||||| ||||||||||| ||||||| | ||||| || ||||||||||| ||||||||
Sbjct 541 AATAAAGTAATTGGAGCAAAATACTTCCGCCTCCAA-CAAGAAGGCCTTCCCGATGGCGA 599
Query 600 GGGAGACACTGCAGCAGATCACGATGGTCACGGGACTCACACATCTTCCACAATTGCCGG 659
||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GGGAGACTCTGCAGCGGATTACGATGGTCACGGGACTCACACATCTTCCACAATTGCCGG 659
Query 660 TGTTTCAGTCTCCAGCGCTAGCCTTTTCGGAATTGCAAACGGAACAGCTCGAGGTGGTGT 719
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 660 TGTTTCAGTCTCCAGCGCTAGCCTTTTCGGAATTGCAAACGGAACAGCTAGAGGTGGTGT 719
Query 720 TCCTTCTGCTAGAATAGCTGCATATAAGGTGTGCTGGGACTCAGGATGTACAGACATGGA 779
|||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCCTTCTGCTCGAATAGCGGCTTATAAGGTGTGCTGGGACTCAGGATGTACAGACATGGA 779
Query 780 CATGTTGGCAGCATTCGACGAGGCGATTTCTGATGGGGTCGATATAATATCGATTTCAAT 839
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 CATGTTGGCGGCATTCGACGAGGCGATTTCTGATGGGGTCGATATAATATCAATTTCAAT 839
Query 840 TGGAGGAGCCTCGCTTCCGTTTTTCGAAGATCCAATAGCTATTGGAGCGTTTCACGCGAT 899
|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 840 TGGAGGAGCCTCACTTCCGTTTTTCGAAGATCCAATCGCGATTGGAGCGTTTCACGCGAT 899
Query 900 GAAAAGAGGGATCTTGACAACGTGTTCCGCAGGTAATAACGGTCCTGGTCTCTTTACGGT 959
||| |||||||||||||||| |||||| ||||| ||||| || || ||||||||||||||
Sbjct 900 GAAGAGAGGGATCTTGACAATGTGTTCTGCAGGCAATAATGGCCCCGGTCTCTTTACGGT 959
Query 960 TTCGAACCTCGCGCCGTGGGTAATGACAGTCGCGGCTAACTCACTCGACCGGAAGTTTGA 1019
||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 960 TTCCAACCTCGCGCCGTGGGTAATGACTGTTGCGGCTAACTCACTCGACCGGAAGTTTGA 1019
Query 1020 AACTGTTGTCAAACTTGGAAATGGACTCACCGCATCTGGAATATCTCTAAACGGATTTAA 1079
|||||||| ||||| |||||||| |||||||||||||| || |||||||||||||| ||
Sbjct 1020 GACTGTTGTTAAACTCGGAAATGGCCTCACCGCATCTGGGATCTCTCTAAACGGATTCAA 1079
Query 1080 TCCAAGAAAGAAAATGTATCCGTTAACAAGCGGTTCGCTTGCATCTAACTTATCTGCAGG 1139
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1080 TCCAAGAAAGAAAATGTATCCGTTAACAAGCGGTTCGCTTGCGTCTAACTTATCTGCAGG 1139
Query 1140 AGGCTATGGAGAGCCCAGTACTTGTGAGCCTGGGACATTAGGGGAAGATAAAGTGATGGG 1199
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1140 AGGCTATGGAGAGCCCAGTACTTGTGAGCCCGGGACATTAGGGGAAGATAAAGTGATGGG 1199
Query 1200 GAAGGTAGTTTACTGTGAAGCAGGACGAGAAGAAGGAGGCAATGGAGGTCAAGGTCAAGA 1259
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1200 AAAGGTAGTTTACTGTGAAGCAGGACGCGAAGAAGGAGGCAATGGAGGTCAAGGTCAAGA 1259
Query 1260 CCATGTTGTGAGAAGTTTAAAAGGAGCTGGTGTGATCGTTCAACTTCTAGAACCAACTGA 1319
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CCATGTTGTGAGAAGCTTAAAAGGAGCTGGTGTGATCGTTCAACTTCTAGAACCAACTGA 1319
Query 1320 TATGGCTACTTCAACGCTCATTGCTGGCTCTTATGTTTTCTTCGAAGACGGTACAAAGAT 1379
|||||| |||||||| ||||| ||||| |||||||| ||||| |||||||||||||||||
Sbjct 1320 TATGGCCACTTCAACTCTCATAGCTGGATCTTATGTCTTCTTTGAAGACGGTACAAAGAT 1379
Query 1380 CACTGAATACATCAACTCCACCAAAAATCCTCAAGCGGTTATCTTTAAGAC-AAAGACAA 1438
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||
Sbjct 1380 CACTGAATACATCAACTCCACCAAAAATCCTCAAGCTGTTATCTTTAAGACTAAA-ACAA 1438
Query 1439 CCAAAATGTTAGCTCCATCGATTTCTTCCTTCTCAGCAAGAGGACCTCAACGAATAAGTC 1498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 CCAAAATGTTAGCTCCATCGATTTCTTCCTTCTCAGCAAGAGGACCTCAACGAATAAGTC 1498
Query 1499 CCAACATTCTCAAGCCTGACATATCAGCGCCGGGACTAAACATTCTCGCAGCATACTCGA 1558
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1499 CCAACATTCTCAAGCCTGACATATCAGCGCCAGGACTAAACATTCTCGCGGCATACTCGA 1558
Query 1559 AGCTAGCATCGGTAACCGGTTATCCAGACGACAATAGACGAACACTGTTCTCCATAATGT 1618
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1559 AGCTAGCATCGGTAACCGGTTATCCAGACGACAATAGACGAACACTTTTCTCCATAATGT 1618
Query 1619 CAGGAACGTCAATGGCTTGTCCTCACGCAGCAGCTGCAGCAGCTTATGTCAAATCATTCC 1678
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1619 CAGGAACATCAATGGCTTGTCCTCACGCAGCAGCTGCAGCAGCTTATGTCAAATCATTCC 1678
Query 1679 ATCCTGATTGGTCTCCAGCCGCAATCAAATCCGCCCTTATGACAACAGCTACTCCTATGA 1738
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1679 ATCCTGATTGGTCTCCAGCCGCTATTAAATCCGCCCTTATGACAACAGCTACTCCTATGA 1738
Query 1739 GAATCAAAGGCAACGAAGCAGAATTAAGTTACGGGTCGGGTCAAATTAACCCGAGAAGAG 1798
||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1739 GAATCAAAGGCAACGAAGCAGAACTAAGTTACGGGTCGGGTCAAATCAACCCGAGAAGAG 1798
Query 1799 CGATTCACCCGGGTCTAGTCTACGACATCACAGAGGACGCATACCTAAGATTCCTATGTA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1799 CGATTCACCCGGGTCTAGTCTACGACATCACAGAGGACGCATACCTAAGATTCCTCTGTA 1858
Query 1859 AAGAAGGGTACAATAGCACAAGCATCGGACTTTTAACCGGCGATAACA-GCAACAACACT 1917
|||||||||| ||||||||||||||||||||||||| |||| |||||| | |||||||||
Sbjct 1859 AAGAAGGGTATAATAGCACAAGCATCGGACTTTTAATCGGCAATAACAAG-AACAACACT 1917
Query 1918 ACGA--A-GAAAGAATACAATTGTGAGAATATCAAGCGAGGGTTAGGTTCCGACGGGTTA 1974
|||| | |||||||||||| || |||||| |||||||||||||||| ||||||||||||
Sbjct 1918 ACGACGAAGAAAGAATACAAATGCGAGAATTTCAAGCGAGGGTTAGGATCCGACGGGTTA 1977
Query 1975 AATTATCCGTCACTGCACAAGCAAGTGAATTCTACGGA-AGCGAAAGTGTCGGAAGTTTT 2033
|||||||||||| ||||||||||||||| ||||||||| | | ||||||||||| |||||
Sbjct 1978 AATTATCCGTCAATGCACAAGCAAGTGACTTCTACGGATACC-AAAGTGTCGGAGGTTTT 2036
Query 2034 CTATAGAACAGTGACGAATGTCGGATACGGACCATCGACCTACGTGGCTAGGGTTTGGGC 2093
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2037 CTATAGAACAGTGAGGAATGTGGGATACGGACCATCGACCTACGTGGCTAGGGTTTGGGC 2096
Query 2094 ACCGAAGGGTTTGAGAGTTGAGGTTGTGCCTAAGGTTATGAGTTTCGAGAGGCCTAAAGA 2153
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||
Sbjct 2097 ACCGAAGGGTTTGAGAGTGGAGGTTGTGCCTAAAGTTATGAGTTTCGAGAGGCCTGGAGA 2156
Query 2154 GAAGAGGAATTTTAAGGTTGTGATTGATGGAGTTTGGGATGAGACAATGAAAGGGATTGT 2213
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2157 GAAGAAGAATTTTAAGGTTGTGATTGATGGAGTTTGGGATGAGACGATGAAAGGGATTGT 2216
Query 2214 GTCTGCTTCTGTGGAATGGGATGATTCGAGAGGACATCTTGTGAGAAGTCCAATTCTGTT 2273
||||||||||||||||||||||||||| ||||||||| |||| ||||| |||||||||||
Sbjct 2217 GTCTGCTTCTGTGGAATGGGATGATTCCAGAGGACATGTTGTTAGAAGCCCAATTCTGTT 2276
Query 2274 GTTTCGATCGGATAACGATTACCGTTAA 2301
||||||||||||||||||||||||||||
Sbjct 2277 GTTTCGATCGGATAACGATTACCGTTAA 2304
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86655307375
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5