BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03640.1
Length=2781
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487143 jgi|Araly1|487143|fgenesh2_kg.6__277__AT5G03640.1 4429 0.0
> Ahg487143 jgi|Araly1|487143|fgenesh2_kg.6__277__AT5G03640.1
Length=2796
Score = 4429 bits (2398), Expect = 0.0
Identities = 2670/2800 (95%), Gaps = 23/2800 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTCATTTGCCGGAAAGTGTGAAATAGTTGAAGAAAAAGAAGACCGTCAAAACTCG 60
||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 1 ATGGGTTCATTTGCCGGAAAGTGTGAATTTGTTGAAGAAAAAGAAGACTGTCAAAACTCT 60
Query 61 ATTGGTTACTCAGCGAAATCAACCACTATTCCACATTCTAGATCAAGCATTGTCGACGAC 120
|||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 61 ATTGTTTACACAGCGAAATCAACGGCTATTCCACATTCTAGATCAAGCATTGTCGACGAC 120
Query 121 AAGGATCTGGAGCGACCGGTACTGAAATTAGGTTACAGAGGTTCACTAGAAGATGACATA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 AAGGATCTGGAGCGACCGGTACTGAAATTAGGTTACAGAGGTTCACTAGAAGATGACATA 180
Query 181 AACCAACTTTTCGAGTCTATAAGCATTCGAACATCAGGAATGATTCCTTCTTACCAAGTT 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 181 AACCAACTTTTCGAGTCTATAAGCATTCGAACATCCGGAATGATTCCTTCTTACCAAGTT 240
Query 241 GGTGCAACTAGTAGCAGTAGAAACAACACTCCTTTACAACGGAATGCTTTGAAGAGTCCC 300
||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 241 GGTGCAAGTAGTAGCAGTAGAAACAACAATCCTTTACAACGGAATGCTTTGAAAAGTCCC 300
Query 301 GCGAATCCCGCAGGACCTCGATCGCCTAGCAAGAGAAATGCGGAACCAGCGACGT-TAAA 359
|||||||||| || || |||||||||||||||||||||||||||||||||| | ||||
Sbjct 301 GCGAATCCCGGGGGGCCGAGATCGCCTAGCAAGAGAAATGCGGAACCAGCGAC-TCTAAA 359
Query 360 ACAAGCTTTGAGAGATTTATGCGTCACTAAGGCATCGGAAACCGCAGCTACCAAACGGAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 360 ACAAGCTTTGAGAGATTTATGCGTCACTAAGGCATCGGAAACCGCAGCTACCAAAAGAAT 419
Query 420 TCCTAAGAGTACTAGTACTGGAGGCTCAGTTTATGGTTCGGTTTTGGTTGAACCGGGAAG 479
|||| | || ||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 420 TCCT-A-AG-ACTAGTACTGGAGGCTCGGTTTATGGTTCTGTTTTGGTTGAACCGGGAAG 476
Query 480 TGGAGCTAGCGAAGAAGGGAAAGCGGTTCTTGTCGAGTTACTCGGCGAGGATCAAAGCAG 539
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 477 TGGAGCTAGCGAAGAAGGGAAAGCCGTTCTTGTCGAGTTACTCGGGGAGGATCAAAGCAG 536
Query 540 TTCATCGGATAGTATATCGCAGCAGCTTCGTCTTCTGAAGATACATTCTTCTAGCCAAAA 599
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 537 TTCATCGGATAGTATATCGCAGCAGCTTCGTCTTCTTAAGATACATTCTTCGAGCCAAAA 596
Query 600 CTCTCAGACATCAAAGCGGTATTGCGATGAGATGACAATACTTAAAAAACACAAGAACCT 659
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 597 CTCTCAGACATCAAAGCGATATTGCGATGAGATGACAATACTTAAAAAACACAAGAACTT 656
Query 660 GTCTCTTGACGACCAAGAAATGAGTATCGAGAACAAGAACTTCGGTTCATCATCGCCCGG 719
||||||||||||||||||| |||||||||||||||||||||| ||||||||||| || ||
Sbjct 657 GTCTCTTGACGACCAAGAATTGAGTATCGAGAACAAGAACTTGGGTTCATCATCTCCTGG 716
Query 720 ATCAGGAAACAACAAGACCGTGGTTGGACTGAAATCAGTTAGAAAAGTGAGGTTGTTGTA 779
|||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATCAGGGAACAATAAGACAGTGGTTGGACTGAAATCAGTTAGAAAAGTGAGGTTGTTGTA 776
Query 780 TGCCAATACACCGAGTTCCACCATAGTTAACGGGAAGAGAGTGGCTAAGTTAACCAGAAC 839
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 777 TGCCAATACACCAAGTTCCACCATAGTTAACGGCAAGAGAGTGGCTAAGTTAACCAGAAC 836
Query 840 CATTCCAAGAGGAGGAGGAGCTAAACCTGCACTAAGGAACAAAGGTTCCATGAAGAAGAA 899
||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 837 CATTCCACGAGGAGGAGGCGCTAAACCGGCACTAAGGAACAAAGGTTCCATGAAGAAGAA 896
Query 900 GGCTACAAATGTGTATGATGAAGTAGATGGCTTCTATGATCCCATTGCAAAGGAACTTCT 959
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGCTACAAATGTGTATGATGAAGTAGATGGCTTCTATGATCCCATTGCAAAGGAACTTCT 956
Query 960 CTGCCATAGATGCCATTTCTCTTTGAAGAACACTGCAGCTAAGGAAGATCCCTCTAAAGA 1019
||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||
Sbjct 957 CTGCCATAGATGCCATTTCGCTTTGAAGAACACTGCAGCTAAAGAAGAGCCCTCTAAAGA 1016
Query 1020 TTCACTTGTAGAACC--A-CATGA---G-ATC--TGTGCTAAAGATGAATTGGCTTCTGA 1070
|||||||| ||| || | | ||| | | | ||| |||||||||||||||||||||
Sbjct 1017 TTCACTTGGAGAGCCAGATCTTGAGCTGAAACAGAGTGTTAAAGATGAATTGGCTTCTGA 1076
Query 1071 TTTCTCCAGCTCAAGCTATGAGAGCTCGCATGAGATCAGTGCTAGTGCAGAGACCAAACT 1130
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct 1077 CTTCTCCAGCTCAAGCTATGAGAGCTCTCATGAGATCGGTGCTAGTGCAGAGACCAAACT 1136
Query 1131 TGATAAGATAAGAAGCTCTCTGGATTTGATGAATTCAGAGACCTCTCACGTTTCTTTAAC 1190
|||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||
Sbjct 1137 TGATAAGATAAGAAGCTCTCTGGATTTGATGAATACAGAGACCCCTCAGGTTTCTTTAAC 1196
Query 1191 ATCTGCATTCCGTAATAAGAACATCAAAGATGTTTCTGAATACGGCAACAATGAGATCAT 1250
||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1197 ATCTGCATTCCGTAACAAGAACATCGAAGATGTTCCTGAATACGGCAACAATGAGATCAT 1256
Query 1251 GGAGGAAGATTCTCTATCTGGCAAAGAAGTTGATCAGAAAGATTCTGTCTTTATGTCGGA 1310
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 1257 TGAGGAAGATTCTCTATCTGGCAAAGAAGTTGATCATAAAGATTCTGTATTTATGTCGGA 1316
Query 1311 ACAGAGCGTGGAGATTGGTTCTTTCAGTGAGAAATCTGTTGTGATGAATCCAGATAGTCC 1370
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 ACAGAGTGTGGAGATTGGTTCTTTCAGTGAGAAATCTGTTGTGATGAATCCAGATAGTCC 1376
Query 1371 TCCAAACAAACTCAGTTTAGGCGGAGCAGCCATTGAAGATGTCAACGAAAACTCAGAAAT 1430
|||||| |||||||| |||| |||||||||||||||||||||||| ||||||||||||||
Sbjct 1377 TCCAAAAAAACTCAGCTTAGACGGAGCAGCCATTGAAGATGTCAAGGAAAACTCAGAAAT 1436
Query 1431 CATAAACAAAGGC-------G-A-CGGATACAACAGTTCAACCACGAGTATCAGCGAGGA 1481
| |||||||||| | | ||||||||||||||||| ||| ||||||||||||||
Sbjct 1437 CGGAAACAAAGGCGAGGAATGTATCGGATACAACAGTTCAAGCACTAGTATCAGCGAGGA 1496
Query 1482 AGAAGTACAACAACAGAGTAATAATATAATGACAAGGTCTAGCTTTGGAAACAGACCTCA 1541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 AGAAGTACAACAACAGAGTAATAATATAATGACAAGGTCTAGCTTTGGAAACAGACCTCA 1556
Query 1542 TATGTCTAAGGATGTGAGATGGGAAGCTATTCAGCATATAAGGGCACAACACGGGCTTGG 1601
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1557 TATGTCTAAGGATGTGAGATGGGAAGCTATTCAGCATATAAGGGCACAACATGGGCTTGG 1616
Query 1602 TTCATTGGGTCTTAGGCATTTCAATCTTCTGAAGAAGCTCGGCTGCGGAGATATTGGAAC 1661
||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||
Sbjct 1617 TTCATTGGGTCTTAGGCATTTTAATCTTCTGAAGAAGCTCGGTTGCGGAGATATAGGAAC 1676
Query 1662 GGTTTATCTCGCTGAGCTCACGGGAACAAACTGTTTGTTTGCTATAAAAGTGATGGATAA 1721
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1677 GGTTTATCTCGCTGAGCTTACGGGAACAAACTGTTTGTTTGCTATAAAAGTGATGGATAA 1736
Query 1722 TGAATTCTTGGAGAGAAGGAACAAGATGTCTAGGGCTCAAACTGAGAAAGATATTCTCAA 1781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1737 TGAATTCTTGGAGAGAAGGAACAAGATGTCTAGGGCTCAAACTGAGAAAGATATTCTCAA 1796
Query 1782 AATGCTTGATCACCCGTTTCTTCCAACGTTATACGCTCACTTCACTTCGGATAACTTATC 1841
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1797 AATGCTTGATCACCCGTTTCTTCCAACGTTATACGCTCACTTCACATCAGATAACTTATC 1856
Query 1842 TTGTTTGGTCATGGAATGTTGTCCGGGAGGTGATTTACATGTCTTAAGGCAGAAGCAGCC 1901
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1857 TTGTTTGGTCATGGAATGTTGTCCGGGAGGCGATTTACATGTCTTAAGGCAGAAGCAGCC 1916
Query 1902 CGGAAGGTGGTTTCCCGAGCCAGCAGCTAGGTTCTATGTCGCGGAGGTGCTTCTTGCATT 1961
||| |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1917 CGGGAGGTGGTTTCCCGAGCCAGCGGCTAGGTTCTATGTCGCGGAGGTGCTTCTCGCATT 1976
Query 1962 GGAGTATTTGCATATGCTCGGGGTAATATACCGAGATTTGAAGCCCGAGAACATTTTGGT 2021
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1977 GGAGTATTTGCATATGCTCGGGGTTATATACCGAGATTTGAAGCCCGAGAACATTTTGGT 2036
Query 2022 ACGTGATGATGGACATATCATGGTGACAGATTTTGATCTCTCTTTGAGGTGTACCGTGAG 2081
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2037 GCGCGATGATGGACATATCATGGTGACAGATTTTGATCTCTCTTTGAGGTGTACGGTGAG 2096
Query 2082 CCCAACGCTTCTAAACTCATCATCTCCACTCCATGCGGATGCAATGAGACTCTCTTCGGG 2141
|||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 2097 CCCAACGCTTCTTAACTCATCATCTCCGCTCCATGCTGATGCAATGAGACTCTCTTCGGG 2156
Query 2142 TAGCCGCACTGGATCTAACTGCATCGAGCCATCGTGTTTCCGCCCTAAACTCTCCCGCGG 2201
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 2157 TAGCCGCACTGGATCTAACTGCATCGAGCCATCATGTTTCCGCCCTAAACTTTCCCGCGG 2216
Query 2202 ATCAGGGCCCAAGAAAAAAGGCAAACAACACCGCATGATGATGAAAAAACTCAAGAAATC 2261
||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2217 ATCCGGGACCAAGAAAAAAGGCAAACAACACCGCATAATGATGAAAAAACTCAAGAAATC 2276
Query 2262 TGACCTAATCGCGCGGTTCAAATCATTGCCACAGCTCGTGGCAGAACCAACAGATGCGAG 2321
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 2277 TGACCTAATCGCACGGTTCAAATCATTGCCACAGCTTGTGGCAGAACCAACAGATGCAAG 2336
Query 2322 ATCAAACTCTTTTGTTGGAACACACGAGTATCTCGCGCCCGAGATCATTAAAGGAGAAGG 2381
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 2337 ATCAAACTCTTTTGTTGGAACACACGAGTATCTCGCACCAGAGATCATTAAAGGCGAAGG 2396
Query 2382 TCACGGTGCTGCGGTTGACTGGTGGACATTTGGGATCTTTCTATATGAGCTTCTTTACGG 2441
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2397 TCACGGTGCTGCCGTTGACTGGTGGACATTTGGGATCTTTCTATATGAGCTTCTTTACGG 2456
Query 2442 GAAAACTCCATTCAAAGGAGCTACTAATGAGGAGACTATAGCTAATGTGGTGCTTCAGAG 2501
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2457 GAAAACTCCATTCAAAGGTGCTACTAATGAGGAGACTATAGCTAATGTGGTGCTTCAGAG 2516
Query 2502 CTTGAAGTTTCCTGATAACCCTAATGTGAGTTTCCAAGCTAAGGATCTTATAAGAGGTTT 2561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517 CTTGAAGTTTCCTGATAACCCTAATGTGAGTTTCCAAGCTAAGGATCTTATAAGAGGTTT 2576
Query 2562 GTTGGTCAAGGAACCTGAGAACCGGTTAGGGACAGAGAAAGGAGCAGCGGAGATAAAACG 2621
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 2577 GTTGGTCAAGGAACCTGAGAACCGGTTAGGAACAGAGAAAGGAGCGGCGGAGATAAAACG 2636
Query 2622 GCATGCGTTCTTCGAAGGCTTGAACTGGGCGTTGATCCGGTGTGCGATCCCGCCTGAGCT 2681
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2637 GCATGCGTTCTTCGAAGGCTTGAACTGGGCGTTGATCCGGTGTGCGATCCCGCCTGAGCT 2696
Query 2682 TCCGGATTTCTATGACTATGGAGTTCCTAATCAAGAAGGGAAAAGCAATTACTTAGATTG 2741
||||||||| ||||||||||||||||| || || |||||||| |||||||||||||||||
Sbjct 2697 TCCGGATTTTTATGACTATGGAGTTCCGAACCATGAAGGGAATAGCAATTACTTAGATTG 2756
Query 2742 CAAGGCAGTTGGGGAACATCTTGAGTTTGAGTTATTCTAG 2781
||||||||||||||||||||||||||||||||||||||||
Sbjct 2757 CAAGGCAGTTGGGGAACATCTTGAGTTTGAGTTATTCTAG 2796
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104938624975
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5