BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03670.1
Length=1989
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487147 jgi|Araly1|487147|fgenesh2_kg.6__281__AT5G03670.1 2880 0.0
> Ahg487147 jgi|Araly1|487147|fgenesh2_kg.6__281__AT5G03670.1
Length=1967
Score = 2880 bits (1559), Expect = 0.0
Identities = 1857/1995 (93%), Gaps = 44/1995 (2%)
Strand=Plus/Plus
Query 1 ACATTTTTTGAATCACCATCAACAtctttctctcttctttttcttctctctATCTGAGTC 60
|||||||||||||||||||| ||||| || ||| ||| ||| ||||| | ||||| ||
Sbjct 1 ACATTTTTTGAATCACCATCGACATC-TT-TCT-TTC---TTC-TCTCT-T-TCTGACTC 51
Query 61 CAGAAACATTCACATTAATTACAAACTGAAAAAACATTGAAACTTTTGAATAAACTCACG 120
||||||| ||||| ||||||||||||||||| || |||||||| |||||||||||||| |
Sbjct 52 CAGAAACTTTCACTTTAATTACAAACTGAAATAA-ATTGAAACATTTGAATAAACTCAAG 110
Query 121 AGAAGTACTCTGTTTTCTCTTCTTACTCTGTTTCTTGTTGATACAATGGCGTCTCAGAGA 180
| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 111 AAAAGTACTCTGTTTTTTCTTCTCACTCTGTTTCTTGTTGATACAATGGCGTCTCAGAGA 170
Query 181 CATTTAAAAGATCTTCTTGAAGAAGATCAAGAACCGTTTCAGCTTCAAAGTTACATCTCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 CATTTAAAAGATCTTCTTGAAGAAGATCAAGAACCGTTTCAGCTTCAAAGTTACATCTCA 230
Query 241 GACCGACGTTGCCAAATCAATGCTCACGTAACGCATTTACAGGTCAAGAAACGCAGACCC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GACCGACGTTGCCAAATCAATGCTCACGTAACGCATTTACAGGTCAAGAAACGCAGACCT 290
Query 301 ATCTCTCAAAACGCTGGACTTCCCTCGCGTTTCTGCCGCAACGCTTGTTTCTTCTCTCTC 360
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 291 GTCTCTCAAAACGCTGGACTTCCGTCGCGTTTCTGCCGTAACGCTTGTTTCTTCTCTCTT 350
Query 361 CGTGAATCTCCTGACCCGAAAAAGTCTCCACTCTTCGAACTCAAGTCACCAAATCGGAGC 420
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 351 CGTGAATCTCCCGACCCGAAGAAGTCTCCACTGTTCGAACTCAAGTCACCAAATCGGAGC 410
Query 421 CAAAACGCGATTTTCGTCAATATACCGGCGAGAACTGCTTCCATTCTACTAGAAGCTGCG 480
||||||||| ||||||||||||||||||||||||| ||||| || || ||||||||||||
Sbjct 411 CAAAACGCGGTTTTCGTCAATATACCGGCGAGAACCGCTTCGATACTTCTAGAAGCTGCG 470
Query 481 GTTAGGATACAGAAACAGAGTTCAGAAGTGTCTAAAACAAGAACACGAAACGCAGGAAAC 540
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 471 GTTAGGATACAGAAACAGAGTTCAGAAGTGTCTAAAACAAGAACACGAAACGCCGGAAAC 530
Query 541 GCGTTTGGTATATTTGGGTCAGTTCTAAAGAAGCTAACGAACCGGAAGAAACGCGAAATC 600
|||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct 531 GCGTTTGGTATATTCGGGTCAGTTTTAAAGAAGCTAACGAACCGAAAGAAACGCGAAATC 590
Query 601 AGCGGCGGCAAAGAAGCTGGTCGCGTTTCTTCCTCTTCTGTTAAAGATATGTTGAGATGG 660
|||||||| ||||| | |||||||||||| || || || || ||||||||||||||||||
Sbjct 591 AGCGGCGGTAAAGACGTTGGTCGCGTTTCATCTTCCTCGGTGAAAGATATGTTGAGATGG 650
Query 661 GAATCTCCGGTTGTACGTAAAATAGTCACAAGAAAATCCAAACGTAA--C-GAAGAAGAA 717
||||||||||| |||||||||||||||||||||||||| ||||| || | |||||||||
Sbjct 651 GAATCTCCGGTCGTACGTAAAATAGTCACAAGAAAATCTAAACGCAAAGCAGAAGAAGAA 710
Query 718 AACGCTTCTTCCCAAACGCATAAAATCGCGTCTGAAACGCATTTCTCACGGAGGTCAAGT 777
|||||||| ||||||||||| ||| |||||||||||||||| ||||||||||||||||||
Sbjct 711 AACGCTTCCTCCCAAACGCAGAAAGTCGCGTCTGAAACGCAGTTCTCACGGAGGTCAAGT 770
Query 778 AGTAGTGGTGTTTGGTCAGAGAGTGTTACGAACGGAGAGAGATCTTGGGACGTTGATTTC 837
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 771 AGTAGTGGCGTTTGGTCAGAGAGTGTTACCAACGGAGAGAGATCTTGGGACGTTGATTTC 830
Query 838 GAAACGTCGATTAGCACCAGCAGCCGATCTAACGGTTCAGATGAGTTTGCGATGATGATG 897
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 GAAACGTCCATTAGCACGAGCAGCCGATCTAACGGTTCAGATGAGTTTGCGATGATGATG 890
Query 898 AACGGTCAAGATTTATCGGAAGATAAACGTTTTTGTGAAAGCCCGTTTCATTTTGTTCTC 957
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 AACGGTCAAGATTTATCCGAAGATAAACGTTTTTGTGAAAGCCCGTTTCATTTTGTTCTC 950
Query 958 CAAACAA---TGCCATCAAACGGCGGTTTCAGAACGCCGAATTTCTCATCGCCTGCGGCT 1014
||||||| |||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 951 CAAACAACAATGCCTTCTAACGGCGGTTTCAGAACGCCGAATTTCTCATCACCTGCGGCT 1010
Query 1015 TCTCCACGCCACGATTGTCATGAG-ATggaaaaag-agagttatgaagtagagaagctaa 1072
||||||||| |||||||||| ||| | | | ||| | |||||||| |||||||||||||
Sbjct 1011 TCTCCACGCTACGATTGTCAAGAGCA-G-ATGAAGGACAGTTATGAGGTAGAGAAGCTAA 1068
Query 1073 agaaactagaaatggaggaagaggaagaagaaaaagaacagagCAGCCCAGTATCAGTTT 1132
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1069 AGAAACTAGAAATGGAGGAAGAGGAAGAAGAAAAAGAACAGAGCAGCCCAGTTTCAGTTT 1128
Query 1133 TGGACCCTCCATTTCAGGACGATGACGAAGACATTCACATGGATGACAATAACATCCCTT 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1129 TGGACCCTCCATTTCAGGACGATGACGAAGACATTCACATGGATGACAATAACATCCCTT 1188
Query 1193 CCAGCTTCAGATCTGTACAAAAAGCAAAGCATCTGCTACTACAGAAGCTTTGTAGATTCG 1252
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1189 CCAGCTTCAGATCTGTACAAACAGCAAAGCATCTGCTACTACAGAAGCTTTGTAGATTCG 1248
Query 1253 AGCAACTTGCGGGTTTAGATCCCATGGAACTCGAGAAACGAATGTCGGATCAAGAGACCg 1312
|||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||
Sbjct 1249 AGCAACTTGCGGGTTTGGATCCCATGGAACTCGAGAAAAGAATGTCGGACCAAGAGACCG 1308
Query 1313 aggaggaggaggaggaggaAGAAGAAGAGATGAAAAGTCTTTATCATTGTGAGATTATAA 1372
|||| || |||| || | |||||||||||||||||||||||||||||||| |||||||
Sbjct 1309 AGGA--AG-AGGATGA--A-GAAGAAGAGATGAAAAGTCTTTATCATTGTGAAATTATAA 1362
Query 1373 CTCAGAGAGTTCTTAAAACATACTTTGAAGAGATGGTAGAAGTTCCGGAAGGCGTAGAAG 1432
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1363 CTCAGAGAGTTCTTAAAATGTACTTTGAAGAGATGGTAGAAGTTCCGGAAGGCGTAGAAG 1422
Query 1433 CATTGATCTCAGACCTTGCAGCAGAGGAATTGCCAAGCGACATCGACGGTGAAGCTGAAG 1492
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1423 CATTGATCTCAGACCTTGCAGCAGAGGAATTGCAAAGCGACATCGACAGTGAAGCTGAAG 1482
Query 1493 CCGCGATTGTAGCCAAAAGGGTATGCGAGAGATTGAGATCTTGGAGAGATGTGGAGTCAA 1552
|||| | |||||||||||||||||||||||| |||| |||||||||||||||||| ||||
Sbjct 1483 CCGCAACTGTAGCCAAAAGGGTATGCGAGAGGTTGACATCTTGGAGAGATGTGGAATCAA 1542
Query 1553 ACACAATCGATATGATGGTCGAACATGATTTCAGAACAGAGAGATTGGGATTATGGAGAT 1612
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1543 ACACAATCGATATGATGGTCGAACATGATTTCAGAACAGAAAGTTTGGGATTATGGAGAT 1602
Query 1613 CAAAGAACGACGCAGATGTCTCAGAGACGGTTTTGGATATCGAGTTTGAGATTTTTGAGG 1672
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1603 CAAAGAACGACGCAGAAGTCGCAGAGACGGTTTTGGATATCGAGTTTGAGATTTTTGAGG 1662
Query 1673 ATTTGGTTGAAGAA-TTATCAGAAGACATTGGCGGAAACCGGTGATCGATAACATACGAT 1731
|||||||||||||| || |||| |||||||||||| | ||||||||| | |||| |||
Sbjct 1663 ATTTGGTTGAAGAACTT-TCAGGAGACATTGGCGGGGATTGGTGATCGACATCATATGAT 1721
Query 1732 TCTATATTCGGGTAGCTTCCGTCGCAAGTAATGACAAACTAACCTGCGTTGTTTAGATGG 1791
|||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1722 TCTATATTCGGGAAGCTTCCGTCGCAAGTAATGACAAACTAACATGCGTTGTTTAGATGG 1781
Query 1792 ATGGTGGGTTCAGGGGTGTATGTAAAAGTTTTGGTTGATGAGAG----TATTAAGATTTG 1847
||||||||| | | ||||||||||||||||||||||||| ||||||||||||
Sbjct 1782 ATGGTGGGT---G---T--ATGTAAAAGTTTTGGTTGATGAGAGAGAGTATTAAGATTTG 1833
Query 1848 TGTAATTCCTTATGAGAACTGAGAAATTCATAGGATCAGTGAAGTTCTCTAAACTCTCGG 1907
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1834 TGTAATTCCTTATGAGAACTGAGAAATTCATAGGATCAGTGAAGTTCTCTAAACTCTCGG 1893
Query 1908 ATCGGGTTCTCGAGTTGGGTCGAGGCTCTCTGATTCGGTAGTTGT-ACAATTAGAG--GG 1964
||| ||||||||||||||||||||| |||||||||| |||||||| | | | | ||
Sbjct 1894 ATCAGGTTCTCGAGTTGGGTCGAGGTTCTCTGATTCAGTAGTTGTTAGAGGAA-ATTTGG 1952
Query 1965 ATACAAATCGAATTT 1979
|||||||||||||||
Sbjct 1953 ATACAAATCGAATTT 1967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74771150935
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5