BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03680.1
Length=2162
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487148 jgi|Araly1|487148|fgenesh2_kg.6__282__AT5G03680.1 3336 0.0
> Ahg487148 jgi|Araly1|487148|fgenesh2_kg.6__282__AT5G03680.1
Length=2137
Score = 3336 bits (1806), Expect = 0.0
Identities = 2044/2153 (95%), Gaps = 40/2153 (2%)
Strand=Plus/Plus
Query 15 ttctctctttttttggaattaaaaggtttaacctttacc-tttttttCCCTTCACTATCG 73
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 TTCTCTCTTTTTTTGGAATTAAAAGGTTTAACCTTTACCGTTTTTTTCCCTTCACTATCG 60
Query 74 ATA-ATTGATCTTCTCTTTCGGCTGAATATAAATCTGAAAA-AATGGATCAAGATCAGCA 131
||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||
Sbjct 61 ATAGATTGATCTTCTCTTTCAGCTGAATAGAAATCTGAAAACAATGGATCAAGATCAGCA 120
Query 132 TCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACTAC 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 121 TCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACCAC 180
Query 192 TACAACACCGTCTACTTCTTCTCATTTTCCCTCTGATTTCTTCGGTTTTAACCTTGCTCC 251
|||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 181 GACAACACCGTCTACTTCTTCTCATTTTCCCTCTGATTTTTTTGGTTTTAACCTCGCTCC 240
Query 252 GGTGCAGCCACCGCCACACCGTCTTCATCAGTTCACTACTGATCAAGATATGGGTTTCTT 311
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TGTGCAGCCACCGCCGCACCGTCTTCATCAGTTCACTACTGATCCAGATATGGGTTTCTT 300
Query 312 GCCACGTGGCATACATGGATTGGGT---GGAGGTTCTTCAACGGCTGGAAATAACAGTAA 368
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 301 GCCACGTGGCATACATGGATTGGGTGGAGGAGGTTCTTCGACGGCTGGAAATAACAGTAA 360
Query 369 CTTAAACGCGAGTACTAGTGGTGGAGGA---GTTGGGTTTAGTGGGTTTCTTGACGGTGG 425
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 361 CTTAAACGCGAGTACTAGTGGTGGAGGAGGTGTTGGGTTTAGTGGGTTTCTTGACGGTGG 420
Query 426 TGGTTTCGGCAGCGGA-GTAGGAGGAGACGGTGGAGGAACTGGAAGGTGGCCGAGACAAG 484
|||||||||| ||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 421 TGGTTTCGGCGGCGGAGGT-GGAGGAGAGGGTGGAGGAACTGGAAGGTGGCCGAGACAAG 479
Query 485 AAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATC 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATC 539
Query 545 AAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAA 599
Query 605 GGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTGTACAAATACTATAGGAAGACTA 664
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 600 GGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTTTACAAATACTATAGGAAGACTA 659
Query 665 AAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCCGGCAGCTCGAAG 724
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 660 AAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCAGGCAGCTCGAAG 719
Query 725 CGCTATACGGGGATTCTAATAACTTGGTTTCTTGTCCCAATCATAACACGCAGTTCATGA 784
| || ||||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 720 CACTCTACGGCGATTCCAATACCTTGGTTTCTTGTCCTAATCATAACACGCAGTTCATGA 779
Query 785 GCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAACGTTACTACAACAACGTCCA 844
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 780 GCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAATGTTACTACAACAACGTCCA 839
Query 845 ACATCCATAACGTTGATAGTGTTCATGGTTTTCATCAAAGCCTTAGTCTTTCTAACAACT 904
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 840 ACATCCATAACGTCGATAGTGTTCATGGTTTTCATCAGAGCCTTAGTCTTTCTAACAACT 899
Query 905 ACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTA 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 ACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTA 959
Query 965 GAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAA 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 GAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAA 1019
Query 1025 GGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAG 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAG 1079
Query 1085 AGGAACAACGGATGATGAAAGAAGAGGAATGGAGGAAGATTGAAGCTGCAAGGATTGATA 1144
|||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1080 AGGAGCAACGGATGATGAAGGAAGAGGAATGGAGGAAGATTGAAGCTGCACGGATTGATA 1139
Query 1145 AAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTTGCGGTGA 1204
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1140 AAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTCGCGGTGA 1199
Query 1205 TTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAGCCGCTGTGTTCATCCCCGG 1264
|||||||||||||||||||||||||||||||||||||||| ||| | ||||| || || |
Sbjct 1200 TTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAACCGTTATGTTCGTCGCCAG 1259
Query 1265 AAGAGAGGACAAATGGTAATAATGAGATCCGAAACAATAGTGAGACA-CAGAATGAGAAT 1323
|||||| | | |||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1260 AAGAGATTA-A--TGGTAATAATGAGATCCGAAACAATAGTGAGA-ATCAGAATGAGAAT 1315
Query 1324 GGAAGCGATCAAACGATGACTAACAATGTTTGTGTTAAAGGAAGTAGTAGCTGCTGGGGT 1383
|||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 1316 GGAAGCGATCAAACAATGACTAACAATGTTTCTGTTAAAGGAAGTAGTAGCTGCTGGGAT 1375
Query 1384 GAGCAAGAGATTTTAAAGCTTATGGAGATAAGAACGAGCATGGACTCGACCTTTCAAGAG 1443
|||||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1376 GAGCAAGAGATTTTGAAGCTTATGGAGATAAGAACGAGCATGGACTCGGCGTTTCAAGAG 1435
Query 1444 ATATTAGGAGGGTGCTCGGATGAGTTTCTATGGGAGGAAATCGCAG-CGAAGTTGATTCA 1502
||||| ||||||||||| ||||||||| |||||||| ||||||| | |||||||||||||
Sbjct 1436 ATATTGGGAGGGTGCTCAGATGAGTTTTTATGGGAGCAAATCGC-GTCGAAGTTGATTCA 1494
Query 1503 GTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGCAA 1562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1495 GTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGTAA 1554
Query 1563 TGGAATGAGGAAAGAAAAGAAGCAAATCAACAAGAAAAGAAAGGATAATTCGTCCAGCTG 1622
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1555 TGGAATGAGGAAAGAAAAGAAGCAAATGAACAAGAAAAGAAAGGATAATTCGTCGAGCTG 1614
Query 1623 CGGCGTGTACTACCCGAGAAACGAAGAAAATCCAATCTACAATAATCGAGAAAGTGGATA 1682
|||||||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 1615 CGGCGTGTACTATCCGAGAAATGAAGAAAATCCAATCTACAATAATCAAGAAAGTGGATA 1674
Query 1683 TAATGATAATGATCCGCATCAAATCAACGAACAAGGCAATGTAGGTTCTTCAACATCAAA 1742
|||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1675 TAATGATAATGATCGGCATCAGATGAACGAACAAGGCAATGTAGGTTCTTCAACATCAAA 1734
Query 1743 CGCAAACGCAAACGCAAACGTAACCACTGGAAATCCGAGCGGTGCAATGGCTGCTAGTAC 1802
|||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||
Sbjct 1735 CGCAAACGCAAACG------TAACCGCTGGAAATCCGAGCGGCGCAATGGCAGCTAGTAC 1788
Query 1803 AAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTT 1862
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1789 AAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTT 1848
Query 1863 GAGGCTCAGTAAAGAAGAGAATCAGTAAGTAATTTCTCT---TAATGAAGAAGAAGAAG- 1918
|||||| ||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 1849 GAGGCTAAGTAAAGGAGAGAATCAGTAAGTAATTTCTCTCAATAATGAAGAAGAAGAAGA 1908
Query 1919 -G----TAATCATGTGGTTAACTAATTCTTTTGAGTTAGCTATATATGAGATAAACCTTG 1973
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1909 AGAAGGTAATCATGTGGTTAACTAATTCTTTTGAGTTAGCTATATATGAGATAAACCTTG 1968
Query 1974 ACTTAGCTATTATATGTCACATGCTGCTTAGAA-TTAAGAAATATTTGTTGGGGCTTAAC 2032
|||||||||||||||||||||| || |||||| || |||||||||||||||||||||||
Sbjct 1969 ACTTAGCTATTATATGTCACATTATGTTTAGAAATTGAGAAATATTTGTTGGGGCTTAAC 2028
Query 2033 GAATTATATATCAGCATATATAAGATGAGA--GTCTAAGAATTATATCAAATTAGGCTTT 2090
||||||||||||| |||||||||||| | | |||||||||||| |||||||||||||||
Sbjct 2029 GAATTATATATCAACATATATAAGATTACAAAGTCTAAGAATTAAATCAAATTAGGCTTT 2088
Query 2091 AACCAACGTACGATTATATATTATGTTTTCATGTATTTATTCTGTAAGACTTT 2143
|||||||| | |||||||||||||||||||||||| |||||||||||||||
Sbjct 2089 AACCAACG-A---TTATATATTATGTTTTCATGTATTCATTCTGTAAGACTTT 2137
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81360763320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5