BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03680.1 Length=2162 Score E Sequences producing significant alignments: (Bits) Value Ahg487148 jgi|Araly1|487148|fgenesh2_kg.6__282__AT5G03680.1 3336 0.0 > Ahg487148 jgi|Araly1|487148|fgenesh2_kg.6__282__AT5G03680.1 Length=2137 Score = 3336 bits (1806), Expect = 0.0 Identities = 2044/2153 (95%), Gaps = 40/2153 (2%) Strand=Plus/Plus Query 15 ttctctctttttttggaattaaaaggtttaacctttacc-tttttttCCCTTCACTATCG 73 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1 TTCTCTCTTTTTTTGGAATTAAAAGGTTTAACCTTTACCGTTTTTTTCCCTTCACTATCG 60 Query 74 ATA-ATTGATCTTCTCTTTCGGCTGAATATAAATCTGAAAA-AATGGATCAAGATCAGCA 131 ||| |||||||||||||||| |||||||| ||||||||||| |||||||||||||||||| Sbjct 61 ATAGATTGATCTTCTCTTTCAGCTGAATAGAAATCTGAAAACAATGGATCAAGATCAGCA 120 Query 132 TCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACTAC 191 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 121 TCCTCAGTACGGTATACCGGAGCTCCGGCAGCTCATGAAAGGCGGAGGAAGGACGACCAC 180 Query 192 TACAACACCGTCTACTTCTTCTCATTTTCCCTCTGATTTCTTCGGTTTTAACCTTGCTCC 251 |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| Sbjct 181 GACAACACCGTCTACTTCTTCTCATTTTCCCTCTGATTTTTTTGGTTTTAACCTCGCTCC 240 Query 252 GGTGCAGCCACCGCCACACCGTCTTCATCAGTTCACTACTGATCAAGATATGGGTTTCTT 311 |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| Sbjct 241 TGTGCAGCCACCGCCGCACCGTCTTCATCAGTTCACTACTGATCCAGATATGGGTTTCTT 300 Query 312 GCCACGTGGCATACATGGATTGGGT---GGAGGTTCTTCAACGGCTGGAAATAACAGTAA 368 ||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| Sbjct 301 GCCACGTGGCATACATGGATTGGGTGGAGGAGGTTCTTCGACGGCTGGAAATAACAGTAA 360 Query 369 CTTAAACGCGAGTACTAGTGGTGGAGGA---GTTGGGTTTAGTGGGTTTCTTGACGGTGG 425 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 361 CTTAAACGCGAGTACTAGTGGTGGAGGAGGTGTTGGGTTTAGTGGGTTTCTTGACGGTGG 420 Query 426 TGGTTTCGGCAGCGGA-GTAGGAGGAGACGGTGGAGGAACTGGAAGGTGGCCGAGACAAG 484 |||||||||| ||||| || |||||||| ||||||||||||||||||||||||||||||| Sbjct 421 TGGTTTCGGCGGCGGAGGT-GGAGGAGAGGGTGGAGGAACTGGAAGGTGGCCGAGACAAG 479 Query 485 AAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATC 544 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 AAACCCTAACTCTGTTGGAAATTAGATCTCGTCTTGATCATAAATTCAAAGAAGCTAATC 539 Query 545 AAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAA 604 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AAAAAGGACCTCTTTGGGATGAAGTTTCTAGGATTATGTCCGAGGAACATGGATACCAAA 599 Query 605 GGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTGTACAAATACTATAGGAAGACTA 664 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 600 GGAGTGGGAAGAAATGCAGAGAGAAGTTTGAGAATCTTTACAAATACTATAGGAAGACTA 659 Query 665 AAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCCGGCAGCTCGAAG 724 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 660 AAGAAGGCAAAGCCGGAAGACAAGACGGAAAACATTACAGATTTTTCAGGCAGCTCGAAG 719 Query 725 CGCTATACGGGGATTCTAATAACTTGGTTTCTTGTCCCAATCATAACACGCAGTTCATGA 784 | || ||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||| Sbjct 720 CACTCTACGGCGATTCCAATACCTTGGTTTCTTGTCCTAATCATAACACGCAGTTCATGA 779 Query 785 GCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAACGTTACTACAACAACGTCCA 844 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 780 GCAGTGCTCTTCATGGTTTCCATACTCAAAACCCTATGAATGTTACTACAACAACGTCCA 839 Query 845 ACATCCATAACGTTGATAGTGTTCATGGTTTTCATCAAAGCCTTAGTCTTTCTAACAACT 904 ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 840 ACATCCATAACGTCGATAGTGTTCATGGTTTTCATCAGAGCCTTAGTCTTTCTAACAACT 899 Query 905 ACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTA 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 ACAACTCCTCCGAGCTTGAGCTGATGACTTCCTCTTCGGAAGGGAATGATTCTAGTAGTA 959 Query 965 GAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAA 1024 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 960 GAAGGAAAAAGAGGAGTTGGAAAGCGAAGATAAAGGAGTTCATTGATACGAACATGAAAA 1019 Query 1025 GGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAG 1084 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1020 GGTTGATAGAGAGGCAAGATGTTTGGCTTGAGAAGTTGACAAAGGTTATTGAAGACAAAG 1079 Query 1085 AGGAACAACGGATGATGAAAGAAGAGGAATGGAGGAAGATTGAAGCTGCAAGGATTGATA 1144 |||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 1080 AGGAGCAACGGATGATGAAGGAAGAGGAATGGAGGAAGATTGAAGCTGCACGGATTGATA 1139 Query 1145 AAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTTGCGGTGA 1204 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1140 AAGAGCATTTGTTTTGGGCTAAAGAGAGGGCGAGGATGGAAGCTAGGGATGTCGCGGTGA 1199 Query 1205 TTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAGCCGCTGTGTTCATCCCCGG 1264 |||||||||||||||||||||||||||||||||||||||| ||| | ||||| || || | Sbjct 1200 TTGAGGCATTGCAATACTTGACAGGAAAGCCATTGATAAAACCGTTATGTTCGTCGCCAG 1259 Query 1265 AAGAGAGGACAAATGGTAATAATGAGATCCGAAACAATAGTGAGACA-CAGAATGAGAAT 1323 |||||| | | |||||||||||||||||||||||||||||||| | |||||||||||| Sbjct 1260 AAGAGATTA-A--TGGTAATAATGAGATCCGAAACAATAGTGAGA-ATCAGAATGAGAAT 1315 Query 1324 GGAAGCGATCAAACGATGACTAACAATGTTTGTGTTAAAGGAAGTAGTAGCTGCTGGGGT 1383 |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| | Sbjct 1316 GGAAGCGATCAAACAATGACTAACAATGTTTCTGTTAAAGGAAGTAGTAGCTGCTGGGAT 1375 Query 1384 GAGCAAGAGATTTTAAAGCTTATGGAGATAAGAACGAGCATGGACTCGACCTTTCAAGAG 1443 |||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1376 GAGCAAGAGATTTTGAAGCTTATGGAGATAAGAACGAGCATGGACTCGGCGTTTCAAGAG 1435 Query 1444 ATATTAGGAGGGTGCTCGGATGAGTTTCTATGGGAGGAAATCGCAG-CGAAGTTGATTCA 1502 ||||| ||||||||||| ||||||||| |||||||| ||||||| | ||||||||||||| Sbjct 1436 ATATTGGGAGGGTGCTCAGATGAGTTTTTATGGGAGCAAATCGC-GTCGAAGTTGATTCA 1494 Query 1503 GTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGCAA 1562 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1495 GTTAGGGTTTGATCAGAGAAGTGCCTTATTATGCAAGGAAAAGTGGGAATGGATAAGTAA 1554 Query 1563 TGGAATGAGGAAAGAAAAGAAGCAAATCAACAAGAAAAGAAAGGATAATTCGTCCAGCTG 1622 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1555 TGGAATGAGGAAAGAAAAGAAGCAAATGAACAAGAAAAGAAAGGATAATTCGTCGAGCTG 1614 Query 1623 CGGCGTGTACTACCCGAGAAACGAAGAAAATCCAATCTACAATAATCGAGAAAGTGGATA 1682 |||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct 1615 CGGCGTGTACTATCCGAGAAATGAAGAAAATCCAATCTACAATAATCAAGAAAGTGGATA 1674 Query 1683 TAATGATAATGATCCGCATCAAATCAACGAACAAGGCAATGTAGGTTCTTCAACATCAAA 1742 |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||| Sbjct 1675 TAATGATAATGATCGGCATCAGATGAACGAACAAGGCAATGTAGGTTCTTCAACATCAAA 1734 Query 1743 CGCAAACGCAAACGCAAACGTAACCACTGGAAATCCGAGCGGTGCAATGGCTGCTAGTAC 1802 |||||||||||||| ||||| |||||||||||||||| |||||||| |||||||| Sbjct 1735 CGCAAACGCAAACG------TAACCGCTGGAAATCCGAGCGGCGCAATGGCAGCTAGTAC 1788 Query 1803 AAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTT 1862 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1789 AAACTGCTTCCCGTTCTTCATGGGAGATGGAGATCAGAATTTGTGGGAGAGTTATGGTTT 1848 Query 1863 GAGGCTCAGTAAAGAAGAGAATCAGTAAGTAATTTCTCT---TAATGAAGAAGAAGAAG- 1918 |||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| Sbjct 1849 GAGGCTAAGTAAAGGAGAGAATCAGTAAGTAATTTCTCTCAATAATGAAGAAGAAGAAGA 1908 Query 1919 -G----TAATCATGTGGTTAACTAATTCTTTTGAGTTAGCTATATATGAGATAAACCTTG 1973 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1909 AGAAGGTAATCATGTGGTTAACTAATTCTTTTGAGTTAGCTATATATGAGATAAACCTTG 1968 Query 1974 ACTTAGCTATTATATGTCACATGCTGCTTAGAA-TTAAGAAATATTTGTTGGGGCTTAAC 2032 |||||||||||||||||||||| || |||||| || ||||||||||||||||||||||| Sbjct 1969 ACTTAGCTATTATATGTCACATTATGTTTAGAAATTGAGAAATATTTGTTGGGGCTTAAC 2028 Query 2033 GAATTATATATCAGCATATATAAGATGAGA--GTCTAAGAATTATATCAAATTAGGCTTT 2090 ||||||||||||| |||||||||||| | | |||||||||||| ||||||||||||||| Sbjct 2029 GAATTATATATCAACATATATAAGATTACAAAGTCTAAGAATTAAATCAAATTAGGCTTT 2088 Query 2091 AACCAACGTACGATTATATATTATGTTTTCATGTATTTATTCTGTAAGACTTT 2143 |||||||| | |||||||||||||||||||||||| ||||||||||||||| Sbjct 2089 AACCAACG-A---TTATATATTATGTTTTCATGTATTCATTCTGTAAGACTTT 2137 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 81360763320 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5