BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03690.1
Length=1491
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892283 jgi|Araly1|892283|Al_scaffold_0006_279 1670 0.0
Ahg482625 jgi|Araly1|482625|fgenesh2_kg.4__1685__AT2G36460.1 713 0.0
> Ahg892283 jgi|Araly1|892283|Al_scaffold_0006_279
Length=1080
Score = 1670 bits (904), Expect = 0.0
Identities = 1001/1049 (95%), Gaps = 2/1049 (0%)
Strand=Plus/Plus
Query 199 ATGAGCTCATCGCCAATGCCGCTTACATAGGAACACCAGGGAAAGGTATTCTCGCTGCTG 258
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 29 ATGAGCTCATCGCCAATGCCGCTTACATCGGTACACCAGGGAAAGGTATTCTCGCTGCTG 88
Query 259 ATGAATCCACAGGAACAATCGGAAAACGTTTCGTAAGCATTAACGTTGAGAACGTTGAAT 318
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 89 ATGAATCCACCGGAACAATCGGAAAACGTTTCGCAAGCATTAACGTTGAGAACGTTGAAT 148
Query 319 CAAACAGACGTGCTCTTCGTGAGCTCTTGTTCACCACTCCTGGAGCTCTCCAATACATCA 378
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 CAAACAGACGTGCTCTTCGTGAGCTCTTGTTCACCACTCCTGGAGCTCTCCAATACATCA 208
Query 379 GTGGTATCATTCTCTTCGAAGAAACACTCTACCAGAAAACTGCTTCAGGGAAACTATTTG 438
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 209 GTGGTATCATCCTCTTCGAAGAAACACTCTACCAGAAAACTGCTTCAGGGAAACCATTTG 268
Query 439 TTGATGTAATGAAGGAAGCTGGAGTGCTTCCAGGTATTAAAGTCGATAAAGGAACCGTTG 498
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 269 TTGATGTAATGAAGGAAGCTGGAGTGCTTCCAGGTATCAAAGTCGATAAAGGAACCGTTG 328
Query 499 AGCTCGCTGGTACAAATGGTG-AAACCACAACCACTGGTCTCGACGGACTTGGTGACCGT 557
|||||||||||||||| || | |||| ||||||| ||| || || |||||||||||||||
Sbjct 329 AGCTCGCTGGTACAAACGGCGNAAAC-ACAACCATTGGCCTTGATGGACTTGGTGACCGT 387
Query 558 TGCAAGAAGTACTATGAAGCTGGTGCACGTTTTGCCAAGTGGCGTGCTGTTCTCAAAATC 617
|||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 388 TGCAAGAAATACTACGAAGCTGGTGCACGTTTTGCTAAGTGGCGTGCTGTTCTCAAAATT 447
Query 618 GGAAACAATGAGCCTTCTGAGTTAGCTATCCATGAGAATGCTTATGGTTTAGCGAGATAC 677
||| ||||||||||||||||||| |||||||||||||||||||| |||||||| |||||
Sbjct 448 GGAGACAATGAGCCTTCTGAGTTGGCTATCCATGAGAATGCTTACGGTTTAGCAAGATAT 507
Query 678 GCAGTTATTTGCCAAGAGAACGGTCTTGTTCCCATTGTTGAACCAGAGATTCTTGTTGAT 737
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 508 GCAGTTATTTGCCAAGAGAATGGTCTTGTCCCCATTGTTGAACCAGAGATTCTTGTTGAT 567
Query 738 GGATCTCATGACATTGAGAAATGTGCTTATGTCACGGAACGAGTCCTTGCGGCTTGTTAC 797
|||||||| ||||||||| ||||||||||||| ||||||||||| |||||||||||||||
Sbjct 568 GGATCTCACGACATTGAGCAATGTGCTTATGTTACGGAACGAGTTCTTGCGGCTTGTTAC 627
Query 798 AAGGCTCTTAGTGATCACCATGTGATCTTAGAAGGAACACTCTTGAAACCAAACATGGTT 857
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 AAGGCTCTGAGTGATCACCATGTGATCTTAGAAGGAACACTCTTGAAACCAAACATGGTT 687
Query 858 ACTCCAGGTTCTGACAGTGGTTCTAAAGTTAAACCCGAAGTGATCGCCAAGCACACGGTC 917
||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 688 ACTCCAGGTTCAGACAGTGGTTCTAAAGTTAAACCAGAAGTGATCGCCGAGCACACGGTC 747
Query 918 CGTGCTTTACAAAGGACTGTTCCTGCAGCAGTTCCAGCCGTTGTGTTCTTGTCTGGAGGA 977
||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 748 CGTGCTTTACAGAGGACGGTTCCTGCAGCTGTTCCGGCCGTTGTGTTCTTGTCTGGAGGA 807
Query 978 CAGAGTGAGGAAGAAGCAACTGTGAATTTAAACGCCATTAATCAGCTCAAAGGGAAGAAA 1037
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 808 CAGAGTGAAGAAGAAGCAACTGTGAATCTAAACGCCATTAATCAGCTCAAAGGGAAGAAA 867
Query 1038 CCATGGAGCTTGACGTTTTCGTATGGACGTGCGCTTCAACAGAGTACACTCAAGGCTTGG 1097
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 868 CCATGGAGCTTGACGTTTTCGTATGGACGCGCGCTTCAACAGAGTACACTCAAGGCTTGG 927
Query 1098 GGAGGTAAAGAGGAGAATGTGGACAAGGCTCAAAAGGCGTTCTTGGCTAGAGCCAAGGCT 1157
|||||||||||||||||| | || |||||||||||||||||||||||| |||||||||||
Sbjct 928 GGAGGTAAAGAGGAGAATTTTGAGAAGGCTCAAAAGGCGTTCTTGGCTCGAGCCAAGGCT 987
Query 1158 AACTCTGAAGCAACCCTTGGTGGCTACAAGGGTGATGCTCAGTTAGGTGAAGGTGCGTCC 1217
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 988 AACTCTGAAGCAACCCTTGGTGGCTACAAGGGTGATGCTCAGCTCGGTGAAGGTGCTTCC 1047
Query 1218 GAGAGCCTTCACGTCAAAGACTACAAATA 1246
|||||||||||||||||||||||||||||
Sbjct 1048 GAGAGCCTTCACGTCAAAGACTACAAATA 1076
Score = 52.8 bits (28), Expect = 7e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 69 ATGTCGTGCTTCAAATCCAAATTCGCCG 96
||||||||||||||||||||||||||||
Sbjct 1 ATGTCGTGCTTCAAATCCAAATTCGCCG 28
> Ahg482625 jgi|Araly1|482625|fgenesh2_kg.4__1685__AT2G36460.1
Length=1329
Score = 713 bits (386), Expect = 0.0
Identities = 849/1068 (79%), Gaps = 49/1068 (5%)
Strand=Plus/Plus
Query 199 ATGAGCTCATCGCCAATGCCGCTTACATAGGAACACCAGGGAAAGGTATTCTCGCTGCTG 258
||||||| || || || || || ||||| || ||||| ||||||||||| || || || |
Sbjct 144 ATGAGCTGATTGCTAACGCTGCGTACATCGGCACACCTGGGAAAGGTATCCTTGCGGCAG 203
Query 259 ATGAATCCACAGGAACAATCGGAAAACGTTTCG-TAAGCATTAACGTTGAGAACGTTGAA 317
||||||| || || || |||||||| ||| | | | ||||| ||||||||||||||||||
Sbjct 204 ATGAATCAACTGGTACCATCGGAAAGCGTCTAGCT-AGCATCAACGTTGAGAACGTTGAA 262
Query 318 TCAAACAGACGTGCTCTTCGTGAGC-TCTTGTTCACCACTCCTGGAGCTC-TCCAAT-AC 374
|| |||||||||||||||||||||| || | ||||| ||||||||||||| ||| | |
Sbjct 263 TCGAACAGACGTGCTCTTCGTGAGCTTC-TCTTCACTACTCCTGGAGCTCTTCC-TTGTC 320
Query 375 ATCAGTGGTATCATTCTCTTCGAAGAAACACTCTACCAGAA-AACTGCTTCA-GGGA-AA 431
|||||||| | || ||||| ||||| || ||||||||||| | || | | | || |
Sbjct 321 -TCAGTGGTGTTATCCTCTTTGAAGAGACTCTCTACCAGAAGAGCT-C-TAATGGTACGC 377
Query 432 CTATTTGTTGATGTAATGAAGGA-AGCTGGAGTGCTT-CCAGGTATTAAAGTCGATAAAG 489
|| ||||| ||| | |||| || || ||||| ||| || |||||||| || ||||| |
Sbjct 378 CT-TTTGTGGATATGTTGAA-GAGTGCAGGAGT-CTTGCCTGGTATTAAGGTTGATAAGG 434
Query 490 GAACCGTTGAGCTCGCTGGTACAAATGGTGAAACCACAAC-CACTGGTCTCGACGGACTT 548
| ||||||||||| ||||| || |||||||| || || || || ||||| || || |||
Sbjct 435 GTACCGTTGAGCTTGCTGGAACCAATGGTGAGACGACTACTCA-AGGTCTTGATGGTCTT 493
Query 549 GGTGACCGTTGCAAGAAGTACTATGAAGCTGGTGCACGTTTTGCCAAGTGGCGTGCTGTT 608
||||||||||||||||||||||| || |||||||| ||||| || ||||||||||| |||
Sbjct 494 GGTGACCGTTGCAAGAAGTACTACGAGGCTGGTGCTCGTTTCGCTAAGTGGCGTGCGGTT 553
Query 609 CTCAAAATCGGAAACAATGAGCCTTCTGAGTTAGCTATCCATGAGAATGCTTATGGTTTA 668
|| || || || | |||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 554 CTTAAGATTGGTGAGAATGAGCCCTCTGAGTTAGCTATCCATGAGAACGCTTATGGATTG 613
Query 669 GCGAGATACGCAGTTATTTGCCAAGAGAACGGTCTTGTTCCCATTGTTGAACCAGAGATT 728
|| || ||||| || ||||| || |||||||||||||| || ||||| || || ||||||
Sbjct 614 GCTAGGTACGCTGTCATTTGTCAGGAGAACGGTCTTGTGCCGATTGTGGAGCCTGAGATT 673
Query 729 CTTGTTGATGGATCTCATGACATTGAGAAATGTGCTTATGTCACGGAACGAGTCCTTGCG 788
||||||||||| ||||| ||||| | || ||||| || || || || || |||||
Sbjct 674 CTTGTTGATGGTTCTCACGACATCCACAAGTGTGCCGCGGTGACAGAGCGTGTTCTTGCA 733
Query 789 GCTTGTTACAAGGCTCTTAGTGATCACCATGTGAT-CTTAGAAGGAACACTCTTGAAACC 847
||||| |||||||| || |||||||||||||| | ||| ||||||||||||||||||||
Sbjct 734 GCTTGCTACAAGGCCCTGAGTGATCACCATGTCTTGCTT-GAAGGAACACTCTTGAAACC 792
Query 848 AAACATGGTTACTCCAGGTTCTGACAGTGGTTCTAAAGTTAAACCCGAAGTGATCGCCA- 906
||||||||| |||||||| || || |||| | || ||| || || ||||| || |
Sbjct 793 AAACATGGTGACTCCAGGATCAGAGAGTGC--C-AAGGTTGCTCCAGAGGTGATTGC-AG 848
Query 907 AGCACACGGTCCGTGCT-TTACAAAGGACTGTTCCTGCAGCAGTTCCAGCCGTTGTGTTC 965
||||||| ||||||||| || || |||||||| || || || ||||||||| | ||||||
Sbjct 849 AGCACACTGTCCGTGCTCTT-CAGAGGACTGTGCCAGCTGCTGTTCCAGCCATAGTGTTC 907
Query 966 TTGTCTGGAGGACAGAGTGAGGAAGAAGCAACTGTGAAT--TTAAACGCCATTAATCA-G 1022
|||||||| |||||||| |||||||| || || ||| |||| ||| || || || |
Sbjct 908 TTGTCTGGTGGACAGAGCGAGGAAGAGGCGACAA-GAAACCTTAA-CGCGATGAA-CAAG 964
Query 1023 CTCAAAGGGAA-GAAACCATGGAGCT-TGACGTTTTCGTATGGACGTGCGCTT-CAACAG 1079
| || | || ||| || ||| || || | ||||| | |||| | ||| || ||||||
Sbjct 965 TTGAA-GACAAAGAAGCCTTGGT-CTCTGTCTTTTTCCTTTGGAAGGGCG-TTGCAACAG 1021
Query 1080 AGTACACTCAAGGCTTGGGGAGGTAAAGAGGAGAATGTGGAC-AAGGCTCAA-AAGGCGT 1137
|| || | ||| |||||||||| ||||||||||||||| || ||||| ||| ||| |||
Sbjct 1022 AGCACTTTGAAGACTTGGGGAGGAAAAGAGGAGAATGTG-ACCAAGGCGCAAGAAG-CGT 1079
Query 1138 TCTTGGCTAGA-GCCAAGGCTAACTCTGAAGCAACCCTTGGTGGCTACAAGGGTGATGCT 1196
|||||| |||| || ||||| |||||||| || || ||||||| |||||| |||||||||
Sbjct 1080 TCTTGGTTAGATGC-AAGGCCAACTCTGAGGCCACACTTGGTGCCTACAAAGGTGATGCT 1138
Query 1197 CAGTTAGGTGAAGGTGC-GTCCGAGAGCCTTCACGTCAAAGACTACAA 1243
|| | ||||||||||| | | |||||||| ||||| || || |||||
Sbjct 1139 AAGCTCGGTGAAGGTGCAG-CAGAGAGCCTCCACGTTAAGGATTACAA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55802208925
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5