BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03700.1
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487149 jgi|Araly1|487149|fgenesh2_kg.6__283__AT5G03700.1 1367 0.0
> Ahg487149 jgi|Araly1|487149|fgenesh2_kg.6__283__AT5G03700.1
Length=1134
Score = 1367 bits (740), Expect = 0.0
Identities = 844/894 (94%), Gaps = 8/894 (1%)
Strand=Plus/Plus
Query 1 ATGGAAGgtttgtgtttaaactctttcactcgtgttttacttttattgttcgttttcttg 60
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 1 ATGGAAGGTTTGTGTTTAAACTCTTTCACTCGTTTTTTACTTTTTTTGTTCGTTTTCTTG 60
Query 61 gttttttcTCATAAATGGCAACGAGTCAACGC-GGTCGAACCGGTTTTGGAGCTGGTAAA 119
||||||||||||||||||||||||| |||||| | |||||||||||||||||| |||||
Sbjct 61 GTTTTTTCTCATAAATGGCAACGAGCCAACGCAAG-CGAACCGGTTTTGGAGCTAGTAAA 119
Query 120 AGGCTTTGAAGCTAAACCGGACTCGTCCATCGACTCGTTCCAGCCTCTCCTCACTGACTC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 120 AGGCTTTGAAGCTAAACCGGACTCGTCCATCGACTCGTTCCAGCCTCTCCTCACTGACCC 179
Query 180 AAACGGTAACTTTTCATTCGGGTTCTTAAGGGTAAACGGGTCACGTCTCTCTCTCGCCGT 239
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 180 AAACGGTAACTTTTCATTCGGGTTTTTACGGGTAAACGGGTCACGTCTCTCTCTCGCCGT 239
Query 240 CACCCACCCAAATTTAACGGATCCACTATGGGTTCTCGACCCGACCCGCTCAGCTAGCTG 299
|||||||| ||||||||||| ||||| |||||| ||||||||||||| ||||| |||||
Sbjct 240 AACCCACCCGAATTTAACGGAGCCACTCTGGGTTTTCGACCCGACCCGTTCAGCAAGCTG 299
Query 300 GTCGCATAAAACGAAACTCTTCTTCAATGGTAGTCTCGTAATTAT-CGATCC-TTCTTCA 357
|||||||||||||||||||||||||||||| || ||||| ||| | ||| || ||||||
Sbjct 300 GTCGCATAAAACGAAACTCTTCTTCAATGGCAGCCTCGTGATT-TCCGA-CCATTCTTCG 357
Query 358 AGGTTAGAATGGTCAACTCATACTAACGGAGACCGTCTAATCCTCCGTAACGACTCAAAT 417
|||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||
Sbjct 358 AGGTTAGAATGGTCAACTCACACTAACGGAGACCGACTAATACTCCGTAACGACTCAAAT 417
Query 418 CTTCAAGTGGTGAAAACGTCGACGTTCGTTGAGTGGGAGAGTTTTGATTTTCCCGGAAAT 477
|| |||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 418 CTCCAAGTGGTTAAAACGTCGTCCTTCGTCGAGTGGGAGAGTTTTGATTTTCCCGGAAAT 477
Query 478 ACCCTCGTCGAAAGCCAGAATTTCACATCTGCCATGGCTTTGGTTTCACCCAATGGTTTA 537
||||| || |||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 478 ACCCTTGTGGAAAACCAGAATTTCACATCTGCCATGGCTTTGGTTTCACCCAACGGTTTA 537
Query 538 TATTCGATGCGGTTAGGTAGCGATTTCATCGGTTTATACGCTAAAGTCAGCGAAGAGTCT 597
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 538 TATTCGATGCGGTTAGGTAGCGATTTCATCGGTTTATATGCTAAGGTCAGCGAAGATTCT 597
Query 598 CAACAGTTTTACTGGAAACACAGTGCTCTTCAAGCTAAAGCCAAAGTCAAAGACGGAGCT 657
|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||
Sbjct 598 CAACAGTTTTACTGGAAACACAGTGCTCTTCAAGTTAAAGCCAAAATCAAAGACGGAGCC 657
Query 658 GGTCCAATTCTCGCTCGGATTAACCCGAATGGTTATCTCGGTATGTACCAAACCGG-AAG 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 658 GGTCCAATTCTCGCTCGGATTAACCCGAATGGTTATCTCGGTATGTACCAAACCGGTAA- 716
Query 717 TATACCAATCGATGTTGAAGCGTTTAATAGTTTTCAAAGACCGGTCAACGGTTTACTAAT 776
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 717 CATACCAATCGATGTTGAAGCGTTCAATAGTTTTCAAAGACCGGTCAACGGTTTACTAAT 776
Query 777 TCTCCGATTAGAATCCGACGGGAATCTCCGGGGATATCTCTGGGATGGATCTCACTGGGC 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 TCTCCGATTAGAATCCGACGGGAATCTCCGGGGATATCTCTGGGATGGATCTCACTGGGC 836
Query 837 ATTGAATTACGAAGCAATTCGTGAAACTTGTGATCTACCAAATCCGTGTGGTCC 890
|||||| ||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 837 ATTGAACTACGAAGCAATTCGTGAAACTTGCGATCTACCAAACCCGTGTGGTCC 890
Score = 385 bits (208), Expect = 6e-106
Identities = 232/244 (95%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 1206 TAAATTGGGTTATTTTAAGGTACGTGAAGGTGTAGGGAAGAAAAAGAGTCGAGTAGGATT 1265
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 891 TAAATTGGGGTATTTTAAGGTACGTGAAGGTGTAGGGAAGAAAAAGAGTCGAGTAGGATT 950
Query 1266 AACGGTTGGGATGTCTTTGCTTGCTGTGATTGCTTTGGTTTTAATGGTGGCGATGGTTTA 1325
|||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||
Sbjct 951 AACGGTTGGGATGTCTTTACTAGCTGCGATTGCGTTGGTTTTAATGGTGGCGATGGTTTA 1010
Query 1326 TGTCGGGTTTAGGAATTGGAGAAGAGAGAAACGGGTACTAGAAGAAGATAATGGGTTATC 1385
||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 1011 TGTTGGGTTTAGGAATTGGAGTAGAGAGAAACGGGTACTAGAGGAAGATAATGGGCTATC 1070
Query 1386 ACCCGGCCCATATAAAAATCTCGGGTCGGATAGTTTTAATTCCGTTGAAATGAGTCGGAG 1445
||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 1071 ACCCGGCCCGTATAAAAATCTTGGGTCGGATAGTTTTAGTTCCGTTGAAATGAGTCGGAG 1130
Query 1446 ATGA 1449
||||
Sbjct 1131 ATGA 1134
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54202418635
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5