BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03720.1
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939759 jgi|Araly1|939759|scaffold_600303.1 1921 0.0
Ahg488541 jgi|Araly1|488541|fgenesh2_kg.6__1675__AT5G16820.1 100 2e-20
> Ahg939759 jgi|Araly1|939759|scaffold_600303.1
Length=1284
Score = 1921 bits (1040), Expect = 0.0
Identities = 1207/1281 (94%), Gaps = 38/1281 (3%)
Strand=Plus/Plus
Query 1 ATGAGCCCaaaaaaaGATGCTGTTTCTAAACCAACTCCAATTTCAGTACCCGTTTCGAGA 60
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 21 ATGAGCCCAAAAAAAGATGCTGTTTCTAAACCAACTCCAATCTCAGTACCCGTTTC--GA 78
Query 61 CGATCCGATATACCCGGGTCTCTCTACGTCGACACTGACATGGGTTTCTCTGGGTCACCA 120
| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 79 C---CCG----ACCCGGGTCTCTCTACGTCGACACTGACATGGGTTTCTCTGGGTCACCA 131
Query 121 CTTCCCATGCCACTAGACATCTTACAAGGGAATCCAATTCCACCTTTTTTATCCAAGACT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 132 CTTCCCATGCCACTAGACATCTTACAAGGGAATCCAATTCCGCCTTTTTTATCCAAGACT 191
Query 181 TTTGATTTGGTTGATGACCCGACTCTTGACCCGGTCATCTCTTGGGGACTGACCGGAGCT 240
|| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 192 TTCGATTTGGTTGATGACCCGACTCTTGACCCGGTCATCTCTTGGGGACTCACTGGAGCT 251
Query 241 AGCTTCGTAGTTTGGGATCCTCTAGAGTTTGCCAGAATCATACTTCCAAGGAATTTCAAA 300
|||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 252 AGCTTCGTTGTTTGGGATCCTCTAGAGTTCGCCAGAATCATACTTCCACGGAATTTCAAA 311
Query 301 CACAACAATTTCTCCAGCTTCGTCAGACAGCTTAACACTTATGGATTTCGAAAGATTGAT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 312 CACAACAATTTCTCCAGCTTCGTCAGACAGCTTAACACTTATGGATTTCGAAAGATTGAT 371
Query 361 ACTGACAAGTGGGAATTCGCTAACGAGGCTTTCCTTAGAGGCAAGAAGCATCTTCTGAAG 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 372 ACTGACAAGTGGGAATTTGCTAACGAGGCTTTCCTTAGAGGCAAGAAGCATCTTCTGAAG 431
Query 421 AACATTCATCGTCGTCGATCACCACAATCCAACCAAACTTGCTGCAGTAGCACTAGCCAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 432 AACATTCATCGTCGTCGATCACCACAATCCAACCAAACTTGCTGCAGTAGCACCAGCCAA 491
Query 481 AGCCAAGGGTCACCTACTGAGGTTGGAGGAGAGATTGAGAAGCTGAGGAAAGAGCGGCGT 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 492 AGCCAAGGGTCACCTACTGAGGTTGGAGGAGAGATTGAGAAGCTGAGGAAAGAGCGGCGT 551
Query 541 GCATTGATGGAGGAAATGGTTGAGCTTCAGCAGCAAAGCAGAGGCACAGCTCGACATGTG 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 GCGTTGATGGAGGAAATGGTTGAGCTTCAGCAGCAAAGCAGAGGCACAGCTCGACATGTG 611
Query 601 GACACTGTAAACCAGAGGCTGAAAGCTGCAGAGCAACGTCAGAAGCAATTGCTCTCTTTC 660
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 GACACTGTGAACCAGAGACTGAAAGCTGCAGAGCAACGTCAGAAGCAATTGCTCTCTTTC 671
Query 661 TTGGCTAAGTTGTTTCAGAACCGGGGTTTCTTGGAACGCCTGAAGAACTTCAAAGGAAAA 720
|||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
Sbjct 672 TTGGCTAAGTTGTTTCAGAACCCGGGTTTCTTGGAACGCCTGAAGAACCTCAAAGGAAGA 731
Query 721 GAAAAAGGAGGAGCTCTTGGATTGGAAAAGGCGAGAAAGAAGTTCATCAAGCACCACCAG 780
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 732 GAAAAAGGAGGAGCCCTTGGATTGGAAAAGGCGAGAAAGAAGTTCATCAAGCACCA---G 788
Query 781 CAGCCTCAAGATTCTCCAACAGGAGGGGAGGTGGTGAAGTATGAAGCTGATGATTGGGAG 840
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 789 CAGCCTCAAGATTCTCCAACAGGAGGGGAGATGGTGAAGTATGAAGCTGATGATTGGGAG 848
Query 841 AGATTGCTAATGTATGACGAAGAGACTGAGAACAC-CAAGGGTTTAGG-A----GGGATG 894
||||||||||||||||||||||||||||||| ||| | | | ||| | ||||||
Sbjct 849 AGATTGCTAATGTATGACGAAGAGACTGAGACCACTCCACTCTCTAGCCACCAAGGGATG 908
Query 895 ACTTCAAGCG-AT------CC-A----AAAGGCAAGAACTTGATGTATCCATCAGAAGAA 942
|||||||||| | || | |||||||||||||||||| ||||||| ||||||
Sbjct 909 ACTTCAAGCGTAGGAGGAACCGATCTGAAAGGCAAGAACTTGATGAATCCATCCGAAGAA 968
Query 943 GAGATGAG-CAAACCAGATTACTTGATGTCCTTCCCATCTCCTGAAGGACTTATTAAACA 1001
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 969 GAGATG-GTCAAACCAGATTACTTGATGTCCTTCCCATCTCCTGAAGGACTTATTAAACA 1027
Query 1002 AGAAGAGACGACATGGAGCATGGGTTTCGATACTACAATACCGAGTTTCAGCAACACCGA 1061
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1028 AGAAGAGACGACATGGAGTATGGGTTTCGATACTACAATACCGAGTTTCAGCAACACCGA 1087
Query 1062 TGCATGGGGAAACACAATGGACTATAATGATGTCTCAGAGTTTGGTTTTGCTGCAGAAAC 1121
|| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 1088 TGTATGGGGAAACACAATGGACTATAATGATGTCTCAGAGTTTGGTCATGTTGCAGAAAC 1147
Query 1122 AACAAGTGATGGTTTGCCTGATGTCTGCTGGGAACAATTTGCTGCAGGAATCACAGAGAC 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1148 AACAAGTGATGGTTTGCCTGATGTCTGCTGGGAACAATTTGCTGCAGGAATCACAGAGAC 1207
Query 1182 TGGATTCAACTGGCCAACTGGTGATGATGATGATAATACGCCAATGAATGATCCTTAGGA 1241
||||||||||||||||||||||||||||||| |||| ||||||| |||||||||| ||
Sbjct 1208 TGGATTCAACTGGCCAACTGGTGATGATGATAATAA---GCCAATGGATGATCCTTAAGA 1264
Query 1242 TCTTTTCATATATAGTTTAGA 1262
||||| |||||| |||||||
Sbjct 1265 TCTTT-CATATA--GTTTAGA 1282
> Ahg488541 jgi|Araly1|488541|fgenesh2_kg.6__1675__AT5G16820.1
Length=1786
Score = 100 bits (54), Expect = 2e-20
Identities = 115/142 (81%), Gaps = 13/142 (9%)
Strand=Plus/Plus
Query 286 CCAAGGAATTTCAAACACAACAATTTCTCCAGCTTCGTCAGACAGCTTAAC-ACTTATGG 344
|||| | ||||||| |||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 348 CCAA-GTATTTCAAGCACAACAATTTCTCCAGCTTCGTCAGACAG-TTAAATACTTATGG 405
Query 345 ATTTC-GAAA-GATTGATACTGA-CAAGTGGGAATTCGCTAACGAGGC-TTTCCTTAGAG 400
|||| |||| | ||||| | || | | |||||||| || || |||| |||| ||||||
Sbjct 406 -TTTCAGAAAAG-TTGATCCAGATCGA-TGGGAATTTGCAAATGAGGGATTTC-TTAGAG 461
Query 401 GC-AAGAAGCATCTTCTGAAGA 421
|| || || || || || ||||
Sbjct 462 GCCAAAAA-CAACTACTCAAGA 482
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5