BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03740.1
Length=1242
Score E
Sequences producing significant alignments: (Bits) Value
Ahg349656 jgi|Araly1|349656|fgenesh1_pg.C_scaffold_6000249 754 0.0
Ahg892424 jgi|Araly1|892424|Al_scaffold_0006_420 719 0.0
> Ahg349656 jgi|Araly1|349656|fgenesh1_pg.C_scaffold_6000249
Length=981
Score = 754 bits (408), Expect = 0.0
Identities = 521/574 (91%), Gaps = 13/574 (2%)
Strand=Plus/Plus
Query 441 AACTTGAGGCTGCTGGTTTCAAAGCTGCTCCGAAATCTGCTGCGAAACAGGTGAACTTTC 500
|||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||
Sbjct 410 AACTTGAGGCTGCTGGTTACAGAGCTGCTCCGAAATCAGCTGCGAAACAGGTGAACTTTC 469
Query 501 AGTTGCCAAATGAAGATGTCAAAGCCAAGCAAGATGATGACGCTGACGGTAGTGAAGAAG 560
| |||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||| |
Sbjct 470 AATTGCCAAATGAAGATGTCAAGGCCAAGCAAGATGATGAAGCTGATGATAGTGAAGAGG 529
Query 561 ATTCTTCAGATGATGATGA-TAGTGAAAACTCTGGAGAC-GAGGAGGAAGAGAAGGTTAC 618
| ||||||||||||||||| | | ||||||| |||| ||| || ||| ||||| |
Sbjct 530 AGTCTTCAGATGATGATGAGAACT-CTAACTCTGAAGACTCTGGA-GATGAGGAGGTTGC 587
Query 619 TGCTG-A-AT--C--TGA--CAG-TGAGGAAGATGACTCATCAGACGACGAAGAAGATGA 669
|||| | | | ||| || ||| ||||||||||||||||||||||||||||||||
Sbjct 588 GGCTGCAGTTGGCAGTGAGGAAGATGATGAAGATGACTCATCAGACGACGAAGAAGATGA 647
Query 670 CTCCTCAGAAGAGGAAACCCCAAAGAAGCCTGAAGAACCCAAGAAGAGGTCTGCAGAACC 729
||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 648 CTCATCAGAGGAGGAGACCCCAAAGAAGCCTGAAGAACCCAAGAAGAGGTCTGCAGAAGC 707
Query 730 CAACTCCTCCAAGAACCCTGCGTCCAACAAGAAGGCTAAGTTTGTAACTCCTCAGAAAAC 789
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 708 CAACTCCTCCAAGAACCCTGCTTCCAACAAGAAGGCTAAGTTCGTAACTCCTCAGAAAAC 767
Query 790 AGATTCGAAGAAACCGCATGTCCATGTTGCAACTCCTCATCCCTCAAAACAGGCGGGTAA 849
||| | ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 768 AGAGACAAAGAAACCGCATGTCCATGTTGCAACTCCTCATCCATCAAAACAGGGGGGTAA 827
Query 850 GAATTCTGGTGGAGGCAGCACTGGAGAGACATCGAAGCAGCAGCAGACACCGAAGTCTGC 909
||||||||||||| |||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 828 GAATTCTGGTGGAAGCAGCATTGGAGAGAAATCGAAGCAGCAGCAGACACCAAAGTCTGC 887
Query 910 AGGAGCGTTTGGGTGCAAGTCGTGCACCAGAACCTTTACTTCGGAAATGGGATTGCAGTC 969
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 888 AGGAGCGTTTGGGTGCAAGTCGTGCAGCAGAACCTTTACTTCGGAAATGGGATTGCAGTC 947
Query 970 TCACACAAAGGCCAAACACAGTGCAGCTGCTTGA 1003
||||||||||||||||||||||||||||||||||
Sbjct 948 TCACACAAAGGCCAAACACAGTGCAGCTGCTTGA 981
Score = 427 bits (231), Expect = 8e-119
Identities = 266/283 (94%), Gaps = 2/283 (1%)
Strand=Plus/Plus
Query 131 GGTGTTGAAGTTAAGAATGGCAAACCACTTCACCTAGATCCTGGGCTAGACAGGCTCGTG 190
|||||||||||||||||||||| ||||||||| ||||||||||| |||| | |||||||
Sbjct 13 GGTGTTGAAGTTAAGAATGGCACACCACTTCATATAGATCCTGGGGTAGATATGCTCGTG 72
Query 191 CACATCTCTCAGGTTGCTTTGGGAGAGAGTAAGAACAATGTAACCGAACCAATCCAGCTT 250
|||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 73 CACATCTCACAGGTTGCTTTGGGAGAGAATAAGAGCAATGTAACCGAACCAATCCAGCTT 132
Query 251 TACGTGACTGTTGGATC-GGATAAGCTTCTCATTGGAACGCTATCTCATGAGAAGTTTCC 309
|||||||| |||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 133 TACGTGACAGTTGGA-CAGGATAAGCTTCTCATTGGAACGCTATCTCATGAGAGGTTTCC 191
Query 310 TCAGCTGTCTACGGAGATTGTCTTGGAAAGGAACTTTGCGCTGTCTCATACTTGGAAGAA 369
||||||| |||||||| |||| |||||||||||||||||||||||||||| |||||||||
Sbjct 192 TCAGCTGGCTACGGAGCTTGTGTTGGAAAGGAACTTTGCGCTGTCTCATAGTTGGAAGAA 251
Query 370 TGGGAGCGTTTTCTTCTCTGGTTACAAAGTTGATGCATCTGAT 412
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TGGGAGCGTTTTCTTCTCTGGTTACAAAGTTGATGCATCTGAT 294
> Ahg892424 jgi|Araly1|892424|Al_scaffold_0006_420
Length=942
Score = 719 bits (389), Expect = 0.0
Identities = 480/521 (92%), Gaps = 17/521 (3%)
Strand=Plus/Plus
Query 569 GATGA-TGATGATAGTGAAAACTCTGGAGACGAGGAGGAAGAGAAGGTTACTGCTGAATC 627
||||| || |||| |||| |||||||||| || |||||||||||| ||||||||||| |
Sbjct 424 GATGATTG-TGATTTTGAAGACTCTGGAGAGGAAGAGGAAGAGAAGCTTACTGCTGAAGC 482
Query 628 TGACAGT------GA-G--GAAGATGACTCATCAGACGACGAAGAAGATGACTCCTCAGA 678
||||||| || | ||||||||||||||||||||||||| ||||||||| |||||
Sbjct 483 TGACAGTGAGGAAGATGATGAAGATGACTCATCAGACGACGAAGTAGATGACTCATCAGA 542
Query 679 AGAGGAAACCCCAAAGAAGCCTGAAGAACCCAAGAAGAGGTCTGCAGAACCCAACTCCTC 738
||||| ||||||||||||||||||| | |||||||||| ||||||||| ||||||||||
Sbjct 543 GGAGGAGACCCCAAAGAAGCCTGAAGCATCCAAGAAGAGATCTGCAGAAGCCAACTCCTC 602
Query 739 CAAGAACCCTGCGT-CCAACAAGAAGGCTAAGTTTGTAACTCCTCAGAAAACAGATTCGA 797
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 603 CAAGAACCCTGC-TCCCAACAAGAAGGCTAAGTTTGAAACTCCTCAGAAAACAGATTCGA 661
Query 798 AGAAACCGCATGTCCATGTTGCAACTCCTCATCCCTCAAAACAGGCGGGTAAGAATTCTG 857
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 662 AGAAACCGCATGTCCATGTTGCAACTCCTCATCCATCAAAACAGGCGGGTAAGAATTCTG 721
Query 858 GTGGAGGCAGCACTGGAGAGACATCGAAGCAGCAGCAGACACCGAAGTCTGCAGGAGCGT 917
||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 722 GTGGAAGCAGCATTGGAGAGACTTCGAAGCAGCAGCAGACACCGAAGTCTGCAGGAGCAT 781
Query 918 TTGGGTGCAAGTCGTGCACCAGAACCTTTACTTCGGAAATGGGATTGCAGTCTCACAC-A 976
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 782 TTGGGTGCAAGTCGTGCACCAGAACCTTCACTTCGGAAATGGGATTGCAGTCTCACACAA 841
Query 977 AAGGCCAAACACAGTGCAGCTGCTT---GAGAAGAAGAAGCAGCATGATGACTACTCTCT 1033
||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 842 AAGGCCAAACACAGTGCAGCTGCTTAAAAAGAAGAAGAAGCAGCTTGATGACTACTCTCT 901
Query 1034 ATAATATCTACTCTAGAACTTTGATGTCTTTTGGTACTTAA 1074
|||||||||||||||||||||||||||||||||||||||||
Sbjct 902 ATAATATCTACTCTAGAACTTTGATGTCTTTTGGTACTTAA 942
Score = 281 bits (152), Expect = 7e-75
Identities = 183/198 (92%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 193 CATCTCTCAGGTTGCTTTGGGAGAGAGTAAGAACAATGTAACCGAACCAATCCAGCTTTA 252
|||||||||||||||||| ||||||| | ||||||||| |||||||||||||||||||||
Sbjct 192 CATCTCTCAGGTTGCTTTAGGAGAGAATCAGAACAATGGAACCGAACCAATCCAGCTTTA 251
Query 253 CGTGACT-GTTGGATCGGATAAGCTTCTCATTGGAACGCTATCTCATGAGAAGTTTCCTC 311
| ||| | |||||||||| ||||| |||||||||||||||||||||||||| ||||||||
Sbjct 252 CCTGA-TAGTTGGATCGGCTAAGCGTCTCATTGGAACGCTATCTCATGAGAGGTTTCCTC 310
Query 312 AGCTGTCTACGGAGATTGTCTTGGAAAGGAACTTTGCGCTGTCTCATACTTGGAAGAATG 371
||||| |||||| |||||| ||||||||| ||||| ||||||||||||||||||||||||
Sbjct 311 AGCTGGCTACGGCGATTGTGTTGGAAAGGCACTTTTCGCTGTCTCATACTTGGAAGAATG 370
Query 372 GGAGCGTTTTCTTCTCTG 389
||||||||||||||||||
Sbjct 371 GGAGCGTTTTCTTCTCTG 388
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46395589989
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5