BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03770.1
Length=1601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325028 jgi|Araly1|325028|fgenesh1_pm.C_scaffold_6000248 2102 0.0
> Ahg325028 jgi|Araly1|325028|fgenesh1_pm.C_scaffold_6000248
Length=1320
Score = 2102 bits (1138), Expect = 0.0
Identities = 1259/1319 (95%), Gaps = 2/1319 (0%)
Strand=Plus/Plus
Query 32 ATGAAGCTCGGAGTGTTTGTATACAGATTATACAGAGCT-TTAACCTACGGTGTCTCCCC 90
|||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||
Sbjct 1 ATGAAGCTCGGAGTTTTTGTGTACAGATTATACAGAG-TGTTAACCTACGGTGTCTCCCC 59
Query 91 GTTGATTCACCTACACATACGGTGGCGCAGACTCCGGGGATTAGAGCATTTCAGCCGTTG 150
||| ||| |||||||||||||||||||||||||||||||| |||||||| | | |||||
Sbjct 60 GTTAATTAACCTACACATACGGTGGCGCAGACTCCGGGGACCAGAGCATTGCCGTCGTTG 119
Query 151 GCCCGAGCGGTTCGGTCATCCCTCCGCCGTAAGACCACCGGGATCGCTTATCTGGTTTCA 210
||| ||||||||||||||||| |||||||||||||| ||||| || || ||||||||||
Sbjct 120 GCCAGAGCGGTTCGGTCATCCTTCCGCCGTAAGACCGCCGGGTTCACTCGTCTGGTTTCA 179
Query 211 CGCCGTCTCTTTAGGTGAAGGAATGGCTGCTATTCCGGTGATCAGACACTGCAATGAAGT 270
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 CGCCGTCTCTTTAGGTGAAGGAATGGCTGCGATTCCGGTGATCAGACACTGCAATGAAAC 239
Query 271 AAAGTCAGATTTGACTATCCTAATGACGACGACGACAGTATCTGCATTTGAAGTAATAAA 330
||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAAGCCAGATTTGACTATCCTTATGACGACGACGACAGTATCTGCATTTGAAGTAATAAA 299
Query 331 GAATCAGCTCCCTGTTGGTGTATTACATCAGTTTGCACCACTGGATACACCTTTAGCTAT 390
| |||| || ||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 300 GGATCAACTTCCTGTTGGTGTATTACATCAGTTTGCACCACTGGATACACCGGTGGCTAT 359
Query 391 TGACAGATTCCTTGGCCATTGGAAACCGAATGCGATTATCATAATGGAGAACGAACTCTG 450
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct 360 CGACAGATTCCTTGGCCATTGGAAACCGAATGCGATTGTCATAATGGAGAATGAACTCTG 419
Query 451 GCCTAATCTTATCATGGCTGCTTCAGGACTTCTAATTCCGTTGGGATTGTTGAACGCTCG 510
||||||||| |||||||||||||| ||||||||||||||||||| | |||||||||||||
Sbjct 420 GCCTAATCTCATCATGGCTGCTTCGGGACTTCTAATTCCGTTGGCAATGTTGAACGCTCG 479
Query 511 GATGTCTACTAAATCCTTTAAACGGTGGTCGAGTCCGCTCTTACTACCGCTGGTATCGTT 570
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 480 GATGTCTACTAAATCCTTTAAACGGTGGTCTAGTCCGCTCTTACTACCGCTGGTATCGTT 539
Query 571 GTTGCTATCTAAATTCTCATTGATAGCCCCACTGAGCACCCTGCAGGGTATACGTTTTCA 630
||||||||||||||||||||||||||| || |||||||||||||||||| ||| ||| ||
Sbjct 540 GTTGCTATCTAAATTCTCATTGATAGCACCTCTGAGCACCCTGCAGGGTTTACATTTCCA 599
Query 631 GTTGCTGCATGCGCCACCCTTTGTCATAAATTATTCTGGTGACTTAAAATACGTGGTAAA 690
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCTGCTGCATGCGCCACCCTTTGTCATAAATTATTCTGGTGACTTAAAATACGTGGTAAA 659
Query 691 CAAGTTCCATGTATCTAGTGGAACATCTGAAAGTATAAGAGATCTAAAAGTAGAACTCGC 750
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 660 CAAGTTCCGTGTATCTAGTGGAACATCTGAAAGTATAAGAGATCTAAAAGTAGAACTCTC 719
Query 751 AGAAATGAAAGTCTGGATTGCATCTTCATTACATAGAGGCGAAGAAGAAGTCATTTTAGG 810
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 720 AGAAATGAAAGTCTGGATTGCATCTTCTTTACATAGAGGCGAAGAAGAAGTCATTTTAGG 779
Query 811 AGTTCACAACATGCTTCTCGAATCACATCCGGACTCTGTTGTCATAATTGTGCCTCGACA 870
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AGTTCACAACATGCTTCTCGAATCACATCCGGACTCTGTTGTCATAATTGTGCCTCGACA 839
Query 871 TCCACATCATGGCCAACAGATTGCTCATAAACTGCGGAAAGATGGCCAAAGTGTTGCTCT 930
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TCCACATCATGGCCAACAGATTGCTCATAAACTGCGGAAAGATGGCCAAAGTGTTGCTCT 899
Query 931 AAGGTCTCAAAACGAAAAGCTTACACCAAGGAAGACGAATATATATGTGGTGGATACACT 990
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 900 AAGGTCTCAAAATGAAAAGCTTACATCAAGGAAGACGAATATATATGTGGTGGATACACT 959
Query 991 AGGTGAACTAAGGGAATTGTACAGTGTCGCTCCAATAGCCGTCATTGGAGGCTCTTTCAT 1050
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 960 AGGTGAACTAAGAGAATTGTACAGTGTAGCTCCAATAGCCGTCATTGGAGGCTCTTTCAT 1019
Query 1051 CCCGGGCTTAACTGGTCACAACTTGTCTGAAGCAGCTGCTGCTGGCTGCGCCGTTATTAC 1110
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1020 CCCAGGATTAACTGGTCACAACTTGTCTGAAGCAGCTGCTGCTGGCTGTGCCGTTATTAC 1079
Query 1111 AGGTTGTCATGTTGGGCATTTCTCTCACATGGTGAAGGCGATGCAGCAGGCGAACCCCTT 1170
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||
Sbjct 1080 AGGTTGTCATGTTGGGCATTTCTCTCACATGGTGAAGGCGATGCAGCAGTCGAATCCCTT 1139
Query 1171 ATCGGTGACACAGGTCTCGACAAAACTAGAGCTCAAAGAAGCTGTCGACTTGCTCCTGAG 1230
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1140 ATCGGTGACACAGGTCTCGACAAAACTAGAGCTCAAAGAAGCTGTAGACTTGCTCCTGAG 1199
Query 1231 TAACCCTGAGATCTTGGAAACACATCAGAGAGCTTCTAAAGACGTTTATGAATCTCTATC 1290
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1200 TAACCCTGAGATCTTGGAAACACAGCAGAGAGCTTCTAAAGAAGTTTATGAATCTCTATC 1259
Query 1291 AAGCTGCATTATCACTAACATCTGGAAACTTCTCAATCTTCATATCTTTAGAGGGAAAT 1349
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1260 AAGCTGCATTATCACTAACATCTGGAATCTTCTCAATCTTCATATCTTTAGAGGGAAAT 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59992135875
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5