BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03780.1
Length=1509
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487156 jgi|Araly1|487156|fgenesh2_kg.6__290__AT5G03780.1 1506 0.0
> Ahg487156 jgi|Araly1|487156|fgenesh2_kg.6__290__AT5G03780.1
Length=1511
Score = 1506 bits (815), Expect = 0.0
Identities = 1162/1318 (88%), Gaps = 70/1318 (5%)
Strand=Plus/Plus
Query 199 TGATGAAAGAGATGTGCCACACAAGAAGCGTCGTTGTCTTGGGACTAGTGAGACTACTGA 258
||||||||||||||||||||| |||||||||| |||||||||||| |||| |||||||||
Sbjct 206 TGATGAAAGAGATGTGCCACATAAGAAGCGTCATTGTCTTGGGACCAGTGTGACTACTGA 265
Query 259 TAGAGGAGGATCTGTAGAGCCGCTGCTGGACTTGGATGCTTGTATTGTATGTGAAGTTTC 318
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 266 TAGAGGAGGATCGGTAGAGCCGCTGCTGGACTTGGATGCTTGTATTGTATGTGAAGTTTC 325
Query 319 AGACGAGCGGGTATCTCGTTGTTGCGGGGTTGACTGTCTTCTTTCGTTTCACGGCGAGTG 378
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 326 AGACGAGCGGGTATCCCGTTGTTGCGGGGTTGACTGTCTTCTTTCGTTTCACGGGGAGTG 385
Query 379 TTTGTATGCTGATTTGGgtagtactagtagtagtagtagtagtagtagtGAGGATGTTTC 438
||||||||| | | || | | | | ||||||||||||| ||||||||| |
Sbjct 386 TTTGTATGC-----T--G-AG---T--T-G--G--GTAGTAGTAGTAGCGAGGATGTTGC 427
Query 439 GAATCCATTTTGTCCTTATTGCTGGCTCAAGATTGTTGCACTGAAATCCAAAACATTGAG 498
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 428 AAATCCATTTTGTCCTTATTGCTGGCTCAAGATAGTTGCTCTGAAATCCAAAACATTGAG 487
Query 499 AGAAAAGACCGTTGAGGCGGAAAAGGCGGTCTGCAAGTATCTAGATAAAGAGATGAAAAG 558
|||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||
Sbjct 488 AGAAAAGACCGTTGAGGCAGAGAAGGCGGTCTTCAAGTATCTAGATAAAGAGATGAAAAG 547
Query 559 CAGGGATGAGGATATAACCTTATCTGGTGATGAAATTGGAAACCAAGAGCAGAGTACAGA 618
|||| ||| ||||| |||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 548 CAGGAATGGGGATACAACCTTGTCTGGTGATGCAATTGGAAACCAAGAGCAGAGTACAGA 607
Query 619 C-ATTGTAAGTGA-TCATGA-GTTA-CA-AGGAGA-GAA-GGATGGCTGTTC-ATCAAAA 670
| | || | | | ||| || || | | | | | || || || || ||| ||
Sbjct 608 CAAAGGTGA-TAATTCAAGAGGTGAGAACATGCTATTAATTGA-GG-AAATCGATC--AA 662
Query 671 CCA-GATGCGGATCAAGGGAAAGTGGGTACTGGTAAAGTGATTGACGAAGTTGGAGCATC 729
||| || | |||| |||||||||| ||||||| ||||||||| |||||||||||||||||
Sbjct 663 CCAGGA-GAGGATAAAGGGAAAGTTGGTACTGATAAAGTGATCGACGAAGTTGGAGCATC 721
Query 730 -----A-G-AGA-A-GGTAGCTACAGAAAAATTTCAAGACGC---------TG--AA-GA 768
| | ||| | ||||||||||||||| ||||||||||| || || ||
Sbjct 722 AGAGGACGAAGAGAGGGTAGCTACAGAAAACTTTCAAGACGCTGAAGATGATGACAAGGA 781
Query 769 TGATGAAACAGCTAAAGATCAAGGTACAAGAATCCTGAATACAGGTGCAGGGAAAAAGAG 828
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 782 TGATGAAACAGCTAAAGATCAAAGTACAAGAATCCTGAATACAGGTGCAGGGAAAAAGGG 841
Query 829 AGAGGTTTCTTCGTTTTTGTCTATGCAAGAATCGTTTTCAGCAAAAGAACAGGACCAGGT 888
| | ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 842 AAATGTTTCTTCGTTTTTGTCTATGCAAGAATCATTTTCAGCAAAAGAACACGACCATGT 901
Query 889 CCAGCAGAATGAGAAGCGAAGAAG--G-AGA-GGAT-----TGAAAATTATCGATAGTGA 939
||| ||||||||| ||||||||| | ||| |||| |||| | ||| ||||||||
Sbjct 902 CCAACAGAATGAGGTGCGAAGAAGAAGAAGACGGATAGAACTGAACACTATTGATAGTGA 961
Query 940 CATCTCATCAAAGGGATCAAGTAACGAACGAAATGGAGAAGATGTAACTGAGCAGGTAAC 999
||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 962 AATCTCATCAAAGGGATCAAGTAATGAACGAAATGGAGAAGATGTAACTGAGCAGATAAC 1021
Query 1000 TTCATCGGTTCAAGTAACCTCCCCGTCAGGGAGAATGAGGAACCAGCAGGCAACAACCAA 1059
|||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1022 TTCATCGGCTCAAGTAACCTCCCCGTCAGGGAAAATGAAGAACCAGCAGGCAACAACCAA 1081
Query 1060 AGTTGTGGCTAAGTCAAAGACAGTGAGGGACATTTCTTTCTTTAAGATGGATCAAAGAAG 1119
|| || |||||||||||||||||||||||||||||||||||||| || |||||| |||||
Sbjct 1082 AGCTGCGGCTAAGTCAAAGACAGTGAGGGACATTTCTTTCTTTATGAAGGATCAGAGAAG 1141
Query 1120 GAGGCTACTTTGGACGTACGAAGAAGAAGAGATGCTAAAGGTGGGAGTGGAGAAATTTGC 1179
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1142 GAGGCTACTTTGGACGTACAAAGAAGAAGAGATGCTAAAGGTGGGAGTGGAGAAGTTTGC 1201
Query 1180 AGCAGAAGCAAACAAGAACATGCCATGGAGGAAAATTCTGGAAATGGGAGAGAAGGTGTT 1239
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGCAGATGCAAAGAAGAACATGCCATGGAGGAAAATTCTGGAAATGGGAGAGAAGGTGTT 1261
Query 1240 CCACGAAACACGTACTCCAGCTGATCTCAAGGACAAATGGAGGAGCATGGTC-----AAG 1294
||||||||||||||| |||||||||||||||||||||||||| | |||| || |||
Sbjct 1262 CCACGAAACACGTACACCAGCTGATCTCAAGGACAAATGGAGAAACATGCTCGGCGCAAG 1321
Query 1295 ATTATGAACAAAAACGAACAAGGCAGCACACTAACCCCT-ACTGCTATGTAATCAATAGT 1353
| || || |||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 1322 AGTAGGACCAAAAACGAACAAGGCAGCACACTAAATCCTTACTGCTATGTAATCAATAGT 1381
Query 1354 TAGTGTGACTTATTTTGGAGATGAAGCCAGACTTGGTGAACTAATGTGGGAGTTGATCTG 1413
|||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||
Sbjct 1382 TAGTGTGACTCATTTTGGAGATGAAGCCATACTTGGTGAAGTAATGTGGGAGTTGAGCTG 1441
Query 1414 TGTAATAGACAAAAGTTCCTCCTTTACAAGAACTGACTTCTACTTTTT-GTGTATCTT 1470
| |||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||
Sbjct 1442 TATAATAGACAAAAATTCCTCCTTTACAAGAACTGGCTTCTACTTTTTTGTGCATCTT 1499
Score = 139 bits (75), Expect = 5e-32
Identities = 96/105 (91%), Gaps = 5/105 (5%)
Strand=Plus/Plus
Query 66 ATT-TTAAAC-CGAGACTGATGATTGAGAAGAAACTGTCGAAGATGAAGATGAGAACCAA 123
||| || ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 30 ATTGTTGAACTCGAGACTGATGATTGAG-AGAAACTGTAGAAGATGAAGATGAGAACCAA 88
Query 124 ATCGATTCCGGTTAGGTCTTCGCGCAAATCCCTCGATTCGCTTCT 168
|||||||| ||||||||||||||||||||| |||||| | |||||
Sbjct 89 ATCGATTCTGGTTAGGTCTTCGCGCAAATCTCTCGAT-C-CTTCT 131
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56487833335
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5