BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03790.1
Length=710
Score E
Sequences producing significant alignments: (Bits) Value
Ahg325029 jgi|Araly1|325029|fgenesh1_pm.C_scaffold_6000249 1131 0.0
Ahg892294 jgi|Araly1|892294|Al_scaffold_0006_290 521 2e-147
> Ahg325029 jgi|Araly1|325029|fgenesh1_pm.C_scaffold_6000249
Length=714
Score = 1131 bits (612), Expect = 0.0
Identities = 681/714 (95%), Gaps = 6/714 (1%)
Strand=Plus/Plus
Query 3 ATGGAGTGGTCAACAACGAGCAACGTAGAAAACGTGAGAGTAGCTTTCATGCCACCGCCA 62
|||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGTGGTCAACGACTAGCAACGTAGAAAACGTGAGAGTTGCTTTCATGCCACCGCCA 60
Query 63 TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTTACGCAG-- 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTTACGCAGCA 120
Query 121 G-AAATTCATATACGCCTGGCGATACACAAACCGGACCGGTTATCTCTGTACCGGAATCA 179
| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GGAAATTCATACACGCCTGGCGATACGCAAACCGGACCGGTTATCTCTGTACCGGAATCA 180
Query 180 GAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAAT---GAGATGATAAAAAAG 236
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 181 GAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAACAACGAGATGATAAAGAAG 240
Query 237 AAGAGACTAACGAGTGGACAATTAGCTTCACTTGAGCGAAGTTTTCAAGAAGAGATCAAA 296
||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 241 AAGAGACTAACGAGTGGACAATTAGCTTCACTTGAACGGAGTTTTCAAGAAGAGATCAAA 300
Query 297 TTAGATTCAGACAGGAAGGTGAAGCTGTCGAGAGAGCTCGGTCTGCAGCCACGTCAGATA 356
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 301 TTAGATTCAGACAGGAAGGTGAAGCTGTCGCGAGAGCTCGGTCTGCAGCCACGTCAGATA 360
Query 357 GCAGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTTGAGCAGTTGTAC 416
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 GCGGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTCGAGCAGTTGTAC 420
Query 417 GACTCGCTTAGACAAGAGTACGACGTCGTTTCTAGGGAGAAACAAATGTTACACGATGAG 476
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 421 GACTCGCTTAGACAAGAGTACGACGTCGTTTCCAGGGAGAAACAAATGTTACACGAAGAG 480
Query 477 GTGAAGAAGCTGAGAGCTTTACTAAGAGACCAGGGTTTGATCAAGAAGCAAATCTCTGCC 536
|| ||||||||||||||| |||||||||||||||| |||||||||||||||||||| |||
Sbjct 481 GTAAAGAAGCTGAGAGCTATACTAAGAGACCAGGGATTGATCAAGAAGCAAATCTCGGCC 540
Query 537 GGGACCATCAAAGTTTCCGGTGAGGAAGACACGGTGGAGATTTCATCGGTGGTGGTAGCT 596
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 541 GGGACCATCAAAGTTTCCGGTGAGGAAGACACGGCGGAGATTTCATCGGTGGTAGTAGCT 600
Query 597 CATCCAAGAACGGAGAATATGAACGCAAATCAAATCACCGGAGGGAATCAAGTTTACGGT 656
|||||||||||||||||| ||||| ||||||||||||||||||| |||||||| ||||||
Sbjct 601 CATCCAAGAACGGAGAATCTGAACACAAATCAAATCACCGGAGGAAATCAAGTGTACGGT 660
Query 657 CAATACAACAATCCGATGCTGGTTGCTTCCTCTGGCTGGCCGTCATACCCCTGA 710
|||||||||||||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 661 CAATACAACAATCCGATGCTGGTTGCTTCCTCTGGCTGGCTGTCTTACCCGTGA 714
> Ahg892294 jgi|Araly1|892294|Al_scaffold_0006_290
Length=648
Score = 521 bits (282), Expect = 2e-147
Identities = 449/528 (85%), Gaps = 17/528 (3%)
Strand=Plus/Plus
Query 3 ATGGAGTGGTCAACAACGAGCAACGTAGAAAACGTGAGAGTAGCTTTCATGCCACCGCCA 62
||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||| ||
Sbjct 1 ATGGAATGGTCAACAACGAGCAACGTACAAAACGAGAGAGTTGCTTTCATGCCACCACCG 60
Query 63 TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTT--AC-GCA 119
|||| |||||||| |||||||||||||||| ||||||||||| |||| ||| || |||
Sbjct 61 TGGCTGGAGTCTAACTCCTTTAACTCGCTCCGCAGCTTCAACTATGATTCTTACACAGCA 120
Query 120 GGAAATTCATATACGCCTGGCGA-TACACAAACCGGACCGGTTATCTCTGTACCGGAATC 178
|||||||| |||| | || || | ||| ||||| |||||||||||| |||||||||||||
Sbjct 121 GGAAATTCGTATAAGTCT-GCCACTACGCAAACTGGACCGGTTATCCCTGTACCGGAATC 179
Query 179 AGAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAATGAGATGAT-AA-AA-AA 235
|||||||||||| |||||||||| || ||||| ||||||||||| ||||| || || ||
Sbjct 180 AGAAAAGATCATCAATGCGTACCAATGTCCGAGTAACAACAATGAAATGATAAAGAAGAA 239
Query 236 GAAGAGACTAACGAGTGGACAATTAGCTTCACTTGAGCGAAGTTTTCAAGAAGAGATCAA 295
||||| |||||||||| |||||||||||| ||||| | | |||||||||| || ||||
Sbjct 240 TAAGAGGCTAACGAGTGAACAATTAGCTTCGCTTGAACTACGTTTTCAAGAGGATTTCAA 299
Query 296 ATTAGATTCAGACAGGAAGGTGAAGCT-GTCG-AGAGAGCTCGGTCTGCAGCCACGTCAG 353
||||||||| || |||||| ||||||| | || || ||||| |||||| ||||||| |||
Sbjct 300 ATTAGATTCCGAGAGGAAGCTGAAGCTAG-CGAAG-GAGCTAGGTCTGGAGCCACGGCAG 357
Query 354 ATAGCAGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTTG-AGCAGTT 412
| || ||||||||||| |||||||||||||||||||||| |||||| || | || |||
Sbjct 358 GTCGCGGTTTGGTTCCAGAACCGCCGTGCACGGTGGAAGGTGAAGCATCTCGAAG-AGTC 416
Query 413 GTACGACTCGCTTAGACAAGAGTACGACGTCGTTTCTAGGGAGAAACAAATGTTACACGA 472
|||||||| ||||| ||||||||||| | | ||| || ||||| || ||| |||||||
Sbjct 417 ATACGACTCACTTAGGCAAGAGTACGATGCCATTTGGAGAGAGAAGCAGATGCTACACGA 476
Query 473 TGAGGTGAAGAAGCTGAGAGCT-T--TACTAAGAGACCAGGGTTTGAT 517
|||||||||||||||||||||| | |||||||||| |||||||||||
Sbjct 477 TGAGGTGAAGAAGCTGAGAGCTATCATACTAAGAGATCAGGGTTTGAT 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26114198145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5