BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03790.1 Length=710 Score E Sequences producing significant alignments: (Bits) Value Ahg325029 jgi|Araly1|325029|fgenesh1_pm.C_scaffold_6000249 1131 0.0 Ahg892294 jgi|Araly1|892294|Al_scaffold_0006_290 521 2e-147 > Ahg325029 jgi|Araly1|325029|fgenesh1_pm.C_scaffold_6000249 Length=714 Score = 1131 bits (612), Expect = 0.0 Identities = 681/714 (95%), Gaps = 6/714 (1%) Strand=Plus/Plus Query 3 ATGGAGTGGTCAACAACGAGCAACGTAGAAAACGTGAGAGTAGCTTTCATGCCACCGCCA 62 |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGAGTGGTCAACGACTAGCAACGTAGAAAACGTGAGAGTTGCTTTCATGCCACCGCCA 60 Query 63 TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTTACGCAG-- 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTTACGCAGCA 120 Query 121 G-AAATTCATATACGCCTGGCGATACACAAACCGGACCGGTTATCTCTGTACCGGAATCA 179 | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 121 GGAAATTCATACACGCCTGGCGATACGCAAACCGGACCGGTTATCTCTGTACCGGAATCA 180 Query 180 GAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAAT---GAGATGATAAAAAAG 236 ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 181 GAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAACAACGAGATGATAAAGAAG 240 Query 237 AAGAGACTAACGAGTGGACAATTAGCTTCACTTGAGCGAAGTTTTCAAGAAGAGATCAAA 296 ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 241 AAGAGACTAACGAGTGGACAATTAGCTTCACTTGAACGGAGTTTTCAAGAAGAGATCAAA 300 Query 297 TTAGATTCAGACAGGAAGGTGAAGCTGTCGAGAGAGCTCGGTCTGCAGCCACGTCAGATA 356 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 301 TTAGATTCAGACAGGAAGGTGAAGCTGTCGCGAGAGCTCGGTCTGCAGCCACGTCAGATA 360 Query 357 GCAGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTTGAGCAGTTGTAC 416 || |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 361 GCGGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTCGAGCAGTTGTAC 420 Query 417 GACTCGCTTAGACAAGAGTACGACGTCGTTTCTAGGGAGAAACAAATGTTACACGATGAG 476 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 421 GACTCGCTTAGACAAGAGTACGACGTCGTTTCCAGGGAGAAACAAATGTTACACGAAGAG 480 Query 477 GTGAAGAAGCTGAGAGCTTTACTAAGAGACCAGGGTTTGATCAAGAAGCAAATCTCTGCC 536 || ||||||||||||||| |||||||||||||||| |||||||||||||||||||| ||| Sbjct 481 GTAAAGAAGCTGAGAGCTATACTAAGAGACCAGGGATTGATCAAGAAGCAAATCTCGGCC 540 Query 537 GGGACCATCAAAGTTTCCGGTGAGGAAGACACGGTGGAGATTTCATCGGTGGTGGTAGCT 596 |||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| Sbjct 541 GGGACCATCAAAGTTTCCGGTGAGGAAGACACGGCGGAGATTTCATCGGTGGTAGTAGCT 600 Query 597 CATCCAAGAACGGAGAATATGAACGCAAATCAAATCACCGGAGGGAATCAAGTTTACGGT 656 |||||||||||||||||| ||||| ||||||||||||||||||| |||||||| |||||| Sbjct 601 CATCCAAGAACGGAGAATCTGAACACAAATCAAATCACCGGAGGAAATCAAGTGTACGGT 660 Query 657 CAATACAACAATCCGATGCTGGTTGCTTCCTCTGGCTGGCCGTCATACCCCTGA 710 |||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| Sbjct 661 CAATACAACAATCCGATGCTGGTTGCTTCCTCTGGCTGGCTGTCTTACCCGTGA 714 > Ahg892294 jgi|Araly1|892294|Al_scaffold_0006_290 Length=648 Score = 521 bits (282), Expect = 2e-147 Identities = 449/528 (85%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 3 ATGGAGTGGTCAACAACGAGCAACGTAGAAAACGTGAGAGTAGCTTTCATGCCACCGCCA 62 ||||| ||||||||||||||||||||| |||||| |||||| |||||||||||||| || Sbjct 1 ATGGAATGGTCAACAACGAGCAACGTACAAAACGAGAGAGTTGCTTTCATGCCACCACCG 60 Query 63 TGGCCGGAGTCTAGTTCCTTTAACTCGCTCCACAGCTTCAACTTTGATCCTT--AC-GCA 119 |||| |||||||| |||||||||||||||| ||||||||||| |||| ||| || ||| Sbjct 61 TGGCTGGAGTCTAACTCCTTTAACTCGCTCCGCAGCTTCAACTATGATTCTTACACAGCA 120 Query 120 GGAAATTCATATACGCCTGGCGA-TACACAAACCGGACCGGTTATCTCTGTACCGGAATC 178 |||||||| |||| | || || | ||| ||||| |||||||||||| ||||||||||||| Sbjct 121 GGAAATTCGTATAAGTCT-GCCACTACGCAAACTGGACCGGTTATCCCTGTACCGGAATC 179 Query 179 AGAAAAGATCATGAATGCGTACCGATTTCCGAACAACAACAATGAGATGAT-AA-AA-AA 235 |||||||||||| |||||||||| || ||||| ||||||||||| ||||| || || || Sbjct 180 AGAAAAGATCATCAATGCGTACCAATGTCCGAGTAACAACAATGAAATGATAAAGAAGAA 239 Query 236 GAAGAGACTAACGAGTGGACAATTAGCTTCACTTGAGCGAAGTTTTCAAGAAGAGATCAA 295 ||||| |||||||||| |||||||||||| ||||| | | |||||||||| || |||| Sbjct 240 TAAGAGGCTAACGAGTGAACAATTAGCTTCGCTTGAACTACGTTTTCAAGAGGATTTCAA 299 Query 296 ATTAGATTCAGACAGGAAGGTGAAGCT-GTCG-AGAGAGCTCGGTCTGCAGCCACGTCAG 353 ||||||||| || |||||| ||||||| | || || ||||| |||||| ||||||| ||| Sbjct 300 ATTAGATTCCGAGAGGAAGCTGAAGCTAG-CGAAG-GAGCTAGGTCTGGAGCCACGGCAG 357 Query 354 ATAGCAGTTTGGTTCCAAAACCGCCGTGCACGGTGGAAGGCGAAGCAGCTTG-AGCAGTT 412 | || ||||||||||| |||||||||||||||||||||| |||||| || | || ||| Sbjct 358 GTCGCGGTTTGGTTCCAGAACCGCCGTGCACGGTGGAAGGTGAAGCATCTCGAAG-AGTC 416 Query 413 GTACGACTCGCTTAGACAAGAGTACGACGTCGTTTCTAGGGAGAAACAAATGTTACACGA 472 |||||||| ||||| ||||||||||| | | ||| || ||||| || ||| ||||||| Sbjct 417 ATACGACTCACTTAGGCAAGAGTACGATGCCATTTGGAGAGAGAAGCAGATGCTACACGA 476 Query 473 TGAGGTGAAGAAGCTGAGAGCT-T--TACTAAGAGACCAGGGTTTGAT 517 |||||||||||||||||||||| | |||||||||| ||||||||||| Sbjct 477 TGAGGTGAAGAAGCTGAGAGCTATCATACTAAGAGATCAGGGTTTGAT 524 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26114198145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5