BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03795.1
Length=1821
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487158 jgi|Araly1|487158|fgenesh2_kg.6__292__AT5G03795.1 2399 0.0
> Ahg487158 jgi|Araly1|487158|fgenesh2_kg.6__292__AT5G03795.1
Length=1673
Score = 2399 bits (1299), Expect = 0.0
Identities = 1508/1610 (94%), Gaps = 9/1610 (1%)
Strand=Plus/Plus
Query 62 tttcttctCagagaaagaga-attaatagagagagagaTCATGGGAGATGAAGATGTTGA 120
|||||||||| ||||||||| ||||| | |||||||| ||||||||||||||||||||
Sbjct 26 TTTCTTCTCAAAGAAAGAGATATTAAGCGTGAGAGAGA-GATGGGAGATGAAGATGTTGA 84
Query 121 TGGGAAGTGTAAAAACATGTCTGCATGTTCCTCAACGACGTCGTATTCAACTAAACTCTT 180
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 85 TGGGAAGTGTAGAAACATGTCTGCATGTTCCTCAACGACTTCGTATTCAACTAAACTCTT 144
Query 181 TCTATTCATGGTTCCTCTTGTTGTCATTTCTGGTTTCGTCTTTGTAAATATTGGTCCTAA 240
||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 145 TCTCTTCATGGTTCCTCTTGTTCTCATTTCTGCTTTCGTCTTTGTAAATATTGGTCCTAA 204
Query 241 AGA-TTCAACTTCTTTATTAACCTCTCTGTCCACTACTACTTC-TCATCT---TCCTCCT 295
| | | |||||||||| ||||||||| |||||||| || | || |||||| |||| ||
Sbjct 205 A-ACTCCAACTTCTTTCTTAACCTCTTTGTCCACTTCTTC-TCATCATCTCCCTCCTTCT 262
Query 296 CCGTTTCTGTCTACGGCTCCGGCACCGGCGCCATCTCCTCTGCTACCGGAGATACTTCCC 355
|||| |||| || |||||||||| ||||||| ||||||||||| ||||||||| ||||||
Sbjct 263 CCGTCTCTGCCTCCGGCTCCGGCGCCGGCGCTATCTCCTCTGCCACCGGAGATGCTTCCC 322
Query 356 TCGTTGCCAGCATCATCTTTATCGACTAAAGTGGAATCTATTCAGGGTGATTATAATCGC 415
|||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 323 TCGTTGTCAGCATCATCTTTATCTACTAAAGTGGAATCTATTCAGGATGATTATAATCGC 382
Query 416 ACAATTCAACTGAATATGATCAACGTTACTGCAACGAGTAATAACGTCTCTTCTACGGCA 475
|| |||||| ||||| |||||||||||||| ||||||||| ||||||| |||||||||||
Sbjct 383 ACGATTCAAATGAATCTGATCAACGTTACTACAACGAGTAGTAACGTCACTTCTACGGCA 442
Query 476 TCATTGGAACCAAAGAAAAGAAGAGTTCTTAGCAATTTAGAGAAGATAGAATTCAAGCTA 535
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||
Sbjct 443 TCATTGGAACCAAAGAAGAGAAGAGTTCTTAGCAATTTAGAGAAGATCGAATTCGAGCTA 502
Query 536 CAAAAAGCTCGAGCCTCCATTAAAGCCGCTTCGATGGATGATCCCGTGGACGACCCGGAC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 CAAAAAGCTCGAGCCTCCATTAAAGCCGCTTCGATGGATGATCCCGTGGACGACCCGGAC 562
Query 596 TATGTTCCTCTTGGTCCTATGTATTGGAACGCTAAGGTCTTTCATCGGAGTTACTTGGAG 655
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 563 TATGTTCCTCTTGGTCCTATGTATTGGAACGCGAAGGTCTTTCATCGGAGTTACTTGGAG 622
Query 656 ATGGAGAAACAATTCAAGATATATGTATACAAAGAAGGCGAGCCACCGTTGTTCCATGAC 715
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 623 ATGGAGAAACAATTCAAGATATATGTGTACAAAGAAGGCGAGCCACCGTTGTTCCATGAC 682
Query 716 GGTCCATGCAAAAGCATCTACTCTATGGAAGGAAGTTTCATCTATGAGATAGAAACCGAT 775
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 683 GGTCCATGCAAAAGCATCTACTCTATGGAAGGAAGTTTCATCTATGAGATGGAAACCGAT 742
Query 776 ACACGTTTTCGGACCAATAATCCCGACAAGGCTCATGTTTTTTATCTACCATTTAGTGTC 835
|| ||||| |||||||||||||||||||| || |||| ||||||| |||| |||||||||
Sbjct 743 ACGCGTTTCCGGACCAATAATCCCGACAAAGCACATGCTTTTTATTTACCCTTTAGTGTC 802
Query 836 GTCAAGATGGTAAGATACGTGTATGAACGAAATTCCCGCGATTTCAGCCCCATCCGAAAT 895
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 803 GTCAAGATGGTAAGATACGTGTATGAACGCAACTCCCGCGATTTCAGCCCCATCCGAAAT 862
Query 896 ACAGTCAAGGATTACATCAATCTTGTGGGTGATAAATACCCATATTGGAACCGCAGCATC 955
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 863 ACAGTCAGGGATTACATCAATCTTGTGGGTGATAAATACCCATATTGGAACCGCAGCATC 922
Query 956 GGAGCCGATCATTTCATACTTTCTTGTCACGATTGGGGTCCTGAGGCAAGCTTCTCTCAT 1015
||||||||||| |||||||||||||| ||||| |||||||||||||||||||| ||||||
Sbjct 923 GGAGCCGATCACTTCATACTTTCTTGCCACGACTGGGGTCCTGAGGCAAGCTTTTCTCAT 982
Query 1016 CCACATCTAGGACATAATTCGATTAGAGCTTTGTGCAATGCCAACACGTCAGAGAGATTC 1075
|||||||||||||||||||||||| ||||||| || ||||||||||||||||||| ||||
Sbjct 983 CCACATCTAGGACATAATTCGATTCGAGCTTTATGTAATGCCAACACGTCAGAGAAATTC 1042
Query 1076 AAACCAAGAAAAGATGTGTCGATACCGGAGATCAATCTAAGGACGGGATCCTTAACTGGA 1135
|||||||||||||||||||| ||||||||||| |||||| |||| ||||| |||||||||
Sbjct 1043 AAACCAAGAAAAGATGTGTCAATACCGGAGATTAATCTACGGACAGGATCATTAACTGGA 1102
Query 1136 TTGGTCGGTGGACCGTCACCTTCCAGCCGTCCCATCCTCGCCTTCTTTGCAGGGGGTGTA 1195
||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1103 TTGGTCGGTGGGCCATCACCTTCCAGCCGTCCAATCCTTGCCTTCTTTGCAGGGGGTGTA 1162
Query 1196 CACGGACCGGTAAGGCCAGTCTTGCTCCAGCATTGGGAGAACAAAGATAATGACATTAGA 1255
||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||
Sbjct 1163 CACGGACCGGTAAGGCCAGTCCTGCTCGAACATTGGGAGAACAAAGATAATGACATTAGA 1222
Query 1256 GTCCACAAGTATCTCCCTAGAGGAACGTCTTATTCTGACATGATGCGGAACAGCAAGTTC 1315
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GTCCACAAGTATCTCCCTAGAGGAACGTCTTATTCTGACATGATGCGGAACAGCAAGTTC 1282
Query 1316 TGCATTTGTCCTAGCGGTTATGAGGTTGCGAGCCCGAGGATCGTGGAGGCACTCTACTCG 1375
||||||||||| || |||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1283 TGCATTTGTCCGAGTGGTTATGAGGTTGCGAGCCCGAGGATCGTGGAAGCACTTTACTCG 1342
Query 1376 GGTTGCGTCCCGGTTTTGATAAACTCAGGATATGTTCCTCCGTTCAGCGATGTACTGAAC 1435
||||| ||||||||| ||||||||||||| || |||||||||||||||||| || |||||
Sbjct 1343 GGTTGTGTCCCGGTTCTGATAAACTCAGGCTACGTTCCTCCGTTCAGCGATATATTGAAC 1402
Query 1436 TGGAGATCGTTCTCGGTGATCGTTTCAGTGGAAGACATACCGAATTTGAAAACGATATTG 1495
|||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1403 TGGAGATCGTTCTCAGTCATCGTTTCAGTGGAAGACATACCGAATTTGAAGACGATATTG 1462
Query 1496 ACATCTATATCGCCGAGACAGTACTTAAGGATGTACAGAAGAGTGTTGAAGGTAAGGAGA 1555
||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| ||
Sbjct 1463 ACAGCGATATCGCCGAGACAGTACCTAAGGATGTACAGAAGAGTTTTGAAGGTAAGGCGA 1522
Query 1556 CATTTTGAGGTGAATTCTCCGGCTAAGAGGTTTGATGTGTTTCATATGATTCTTCATTCG 1615
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1523 CATTTTGAAGTGAATTCTCCGGCCAAGAGGTTTGATGTGTTTCATATGATTCTTCATTCG 1582
Query 1616 ATTTGGGTGAGGAGATTGAATGTGAAGATTCGTGAAGTCTAAGTTTTGTC 1665
|||||||| |||||||||||||||| ||| ||||| |||||||||| |||
Sbjct 1583 ATTTGGGTAAGGAGATTGAATGTGAGGATCCGTGAGGTCTAAGTTTGGTC 1632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68371989775
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5