BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03820.1
Length=1077
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487160 jgi|Araly1|487160|fgenesh2_kg.6__294__AT5G03810.1 1517 0.0
> Ahg487160 jgi|Araly1|487160|fgenesh2_kg.6__294__AT5G03810.1
Length=1032
Score = 1517 bits (821), Expect = 0.0
Identities = 950/1013 (94%), Gaps = 5/1013 (0%)
Strand=Plus/Plus
Query 66 CGCCGGCGTTGGGACCGGTGAGCCACTTGTACCGGCTCTAATCATAATGGGAGATTCAGT 125
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 24 CGCCTGCGTTGGGACCGGTCAGCCACTTGTACCGGCTCTAATCATAATGGGAGATTCAGT 83
Query 126 TGTCGATGCCGGCAACAACAACCGCCTCAATACCCTCATCAAAGCCAATTTTCCTCCCTA 185
||||||||| || |||||||||| ||||||||||||| | ||||||||||||||||||||
Sbjct 84 TGTCGATGCTGGTAACAACAACCACCTCAATACCCTCGTTAAAGCCAATTTTCCTCCCTA 143
Query 186 TGGACGTGACTTCTTAGCCCACAATGCCACTGGCCGTTTCTCTAACGGAAAACTTGCCAC 245
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 144 TGGCCGCGACTTCTTCGCCCACAATGCCACTGGCCGTTTCTCTAACGGAAAACTTGCCAC 203
Query 246 AGACTTTACCGCTGAGAGTTTAGGGTTCACTTCTTACCCGGTGCCGTATCTTAGCCAAGA 305
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 204 TGACTTTACCGCTGAGAGTTTAGGGTTCACTTCTTACCCGGTGGCGTACCTTAGCCAAGA 263
Query 306 AGCTAATGGGACAAATCTGTTAACCGGAGCCAATTTCGCCTCTGGTGCTTCCGGTTATGA 365
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 264 AGCTAATGGGACAAATCTGTTAACCGGAGCCAATTTCGCCTCTGGTGCTTCCGGTTTTGA 323
Query 366 CGACGGAACTGCCATATTTTACAATGCAATAACATTGAACCAACAGCTGAAAAACTACAA 425
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 324 CGACGGAACTGCCCTATTTTACAATGCAATAACATTGAACCAACAGCTGGAAAACTACAA 383
Query 426 AGAGTACCAAAACAAGGTGACAAACATTGTTGGAAGCGAAAGAGCAAATAAAATATTCTC 485
||||||||||||||| ||||| |||||||| ||||| |||||||||||| | ||||||||
Sbjct 384 AGAGTACCAAAACAAAGTGACGAACATTGTGGGAAGAGAAAGAGCAAATGAGATATTCTC 443
Query 486 AGGCGCGATTCATCTTCTAAGCACGGGATCAAGCGATTTTCTTCAAAGCTATTACATCAA 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 444 AGGCGCGATTCATCTTCTAAGCACGGGATCAAGCGATTTTCTTCAAAGCTATTACATCAA 503
Query 546 CCCGATCCTTAACCGGATATTCACGCCTGATCAATACTCAGATCGTCTCATGAAACCCTA 605
||||||||||||| ||| |||||||||||||||||||| ||||||||| ||| | ||||
Sbjct 504 TCCGATCCTTAACCTGATTTTCACGCCTGATCAATACTCGGATCGTCTCTTGAGATCCTA 563
Query 606 TTCCACCTTTGTCCAAAATTTGTATGATTTAGGAGCTAGAAAGATTGGAGTGACGACGTT 665
|||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 564 TTCCACCTTTGTGCAAAATTTGTATGGTTTAGGTGCTAGAAAGATTGGAGTGACGACGTT 623
Query 666 ACCGCCATTGGGTTGTTTACCGGCGGCGATAACCTTGTTTGGTGAAACCGGGAACAATAA 725
|||||| |||||||||||||| || || ||||| |||||||||| | |||||| ||
Sbjct 624 ACCGCCGTTGGGTTGTTTACCTGCTGCAATAACGACGTTTGGTGAAGCTGGGAAC---AA 680
Query 726 TACCTGCGTGGAAAGACTAAACCAG-GATGCGGTTTCCTTCAATACCAAACTCAACAACA 784
||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 681 TACGTGCGTCGAAAGACTAAACC-GAGATGCGGTTTCCTTCAATACCAAACTCAACAACA 739
Query 785 CGTCTATGAACTTAACCAACAATCTTCCCGGTCTGAAATTGGTCGTCTTTGACATCTATA 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CGTCTATGAACTTAACCAACAATCTTCCCGGTCTGAAATTGGTCGTCTTTGACATCTATA 799
Query 845 ATCCTCTCTTAAACATGGCCATGAACCCTGTCGAGAATGGGTTTTTTGAATCAAGAAGAG 904
||||||| || | ||||| ||||||||||||||||||||||||||| ||||||||||| |
Sbjct 800 ATCCTCTGTTGAGCATGGTCATGAACCCTGTCGAGAATGGGTTTTTGGAATCAAGAAGGG 859
Query 905 CATGTTGTGGAACCGGAACAGTGGAAACGTCGTTTCTATGTAATGCAAGATCGGTGGGTA 964
| |||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 860 CTTGTTGTGGAACCGGGACAGTGGAAACTTCGTTCCTATGTAATGCAAGATCGGTGGGTA 919
Query 965 CATGTTCGAATGCTACGAATTACGTGTTTTGGGATGGTTTTCATCCATCCGAAGCAGCCA 1024
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 920 CATGTTCGAATGCTACCAATTACGTGTTTTGGGATGGTTTTCATCCATCCGAGGCAGCCA 979
Query 1025 ATCGTGTTATCGCAAATAATCTTCTTGTCCAAGGAATACCCCTCATCTCTTAA 1077
||||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 980 ATCGTGTCATCGCAAATAATCTTCTTGTCCAAGGAATCCCCCTTATCTCTTAA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40105308684
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5