BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03830.1
Length=1282
Score E
Sequences producing significant alignments: (Bits) Value
Ahg935388 jgi|Araly1|935388|scaffold_403376.1 477 8e-134
Ahg487162 jgi|Araly1|487162|fgenesh2_kg.6__296__AT5G03830.1 438 4e-122
> Ahg935388 jgi|Araly1|935388|scaffold_403376.1
Length=1025
Score = 477 bits (258), Expect = 8e-134
Identities = 354/400 (89%), Gaps = 7/400 (2%)
Strand=Plus/Plus
Query 333 AGCAGGTTTTGTGGATTTGATACTGAATCAAACAGCGT-TAGGAACTGTGGTAAAAGTAG 391
|||| ||||||| ||||| ||| || | |||||| | | |||||||||| |||||||| |
Sbjct 364 AGCA-GTTTTGTTGATTTCATATTGGAGCAAACAAC-TGTAGGAACTGTTGTAAAAGTTG 421
Query 392 CAGATGATGAGGATGAGGCATTATTTGCTCTTATCACTGCTCTTAACTTGGCAAGATACA 451
||||||||||||| ||| || ||||||||||| |||||||||||||| |||||||||| |
Sbjct 422 CAGATGATGAGGACGAGTCAGTATTTGCTCTTGTCACTGCTCTTAACATGGCAAGATATA 481
Query 452 AGGAGAATAAGTGCTTTAGAGAGC-TAAAAGAGTTTCTTCTTAAAGTTTGTTCGGAGAAG 510
|||| || |||||||||||||| | ||||||||||||||| ||||||||||| || |||
Sbjct 482 AGGACAACAAGTGCTTTAGAGA-CTTAAAAGAGTTTCTTCGAAAAGTTTGTTCAGAAAAG 540
Query 511 AATGTAGCGAGTGATCTAGAACTACTCTTAGAGAAAAAGGCCA-AAGATGTTGGTTTATT 569
||| |||||| | |||||||| | |||||||||||||||| || ||||||||||||||||
Sbjct 541 AATATAGCGAATAATCTAGAAATGCTCTTAGAGAAAAAGG-CACAAGATGTTGGTTTATT 599
Query 570 GGTCTCTCAAAGAGTGATGAATCTTCCTCTACAACTCCTTCCTCCACTATATGATGGATT 629
||| ||||||||||||||||| ||||||| |||||| ||||||||||| || ||||||||
Sbjct 600 GGTATCTCAAAGAGTGATGAACCTTCCTCCACAACTTCTTCCTCCACTGTACGATGGATT 659
Query 630 GTTCGACGAAGTCTCATGGGCCACTGAAGACGAGCCTACAGAAGAGCTTCGAGGGTCATT 689
|||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 660 GTTCGATGAAGTCTCATGGGCCACTGAAGACGAGCCTACAGAAGAGCTTCGAAGATCATT 719
Query 690 CCGCTTCAAGTCATATATTCTAATCGCTAAGATCTACAAG 729
|||||||||||||||| ||||||| | ||||| ||||||
Sbjct 720 CCGCTTCAAGTCATATCTTCTAATTACCAAGATTTACAAG 759
> Ahg487162 jgi|Araly1|487162|fgenesh2_kg.6__296__AT5G03830.1
Length=753
Score = 438 bits (237), Expect = 4e-122
Identities = 259/270 (96%), Gaps = 0/270 (0%)
Strand=Plus/Plus
Query 453 GGAGAATAAGTGCTTTAGAGAGCTAAAAGAGTTTCTTCTTAAAGTTTGTTCGGAGAAGAA 512
||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 363 GGACAATAAGTGCTTTAGAGAGCTAAAAGAGTTTCTTCTCAAAGTTTGTTCGGAGAAGAA 422
Query 513 TGTAGCGAGTGATCTAGAACTACTCTTAGAGAAAAAGGCCAAAGATGTTGGTTTATTGGT 572
||||| |||||||||||||||||| ||||||||||||| |||||||| |||||||||||
Sbjct 423 AGTAGCTAGTGATCTAGAACTACTCGTAGAGAAAAAGGCGAAAGATGTCGGTTTATTGGT 482
Query 573 CTCTCAAAGAGTGATGAATCTTCCTCTACAACTCCTTCCTCCACTATATGATGGATTGTT 632
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 483 ATCTCAAAGAGTGATGAATCTTCCTCCACAACTCCTTCCTCCACTATATGATGGATTGTT 542
Query 633 CGACGAAGTCTCATGGGCCACTGAAGACGAGCCTACAGAAGAGCTTCGAGGGTCATTCCG 692
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 543 CGACGAAGTCTCATGGGCCACTGAAGACGAGCCTACAGAACAGCTTCGAGGGTCATTCCG 602
Query 693 CTTCAAGTCATATATTCTAATCGCTAAGAT 722
|||||||||||||||||||||| |||||||
Sbjct 603 CTTCAAGTCATATATTCTAATCACTAAGAT 632
Score = 276 bits (149), Expect = 3e-73
Identities = 192/212 (91%), Gaps = 5/212 (2%)
Strand=Plus/Plus
Query 115 ATGCCTAGAAGGCCATCAGGGAGAAGAAGATTGTCAAAGTATAAACCTTTAGCATTTTCA 174
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 ATGCCTCGAAGGCCATCAGGGAGAAGAAGATTGTCAAAGTATCAACCTTTAGCATTTTCA 60
Query 175 TCGTTTATACGTTCTCTTGCCTTTGCTTCAACGGCTAGACGTAAATTGCCTCTTCCGGAT 234
||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CCGTTTATGCGTTCTCTTACCTTTGCTTCAACGGCTAGACGTAAATTGCCTCTTCCAGAT 120
Query 235 ATGTCTTTTGATGAAAAGTTCCATAATTTGTCTAAGAA-AGGGAAAGAGAAATCATC-GT 292
|| ||||||||| ||||| || |||||| || || || ||| |||||| || || | ||
Sbjct 121 ATATCTTTTGATTCAAAGTACCCTAATTTATC-AATAATAGG-AAAGAGCAA-CAACTGT 177
Query 293 TGGAATCCTCTGATGAAGAAGACTCTCAGGGA 324
||||||||||||||||||||||||||||||||
Sbjct 178 TGGAATCCTCTGATGAAGAAGACTCTCAGGGA 209
Score = 111 bits (60), Expect = 1e-23
Identities = 64/66 (97%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 389 TAGCAGATGATGAGGATGAGGCATTATTTGCTCTTATCACTGCTCTTAACTTGGCAAGAT 448
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 230 TAGCAGATGATGAGGATGATGCATTATTTGCTCTTGTCACTGCTCTTAACTTGGCAAGAT 289
Query 449 ACAAGG 454
||||||
Sbjct 290 ACAAGG 295
Score = 89.8 bits (48), Expect = 5e-17
Identities = 56/60 (93%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 981 GAGACACAAAAGATTCCTGAATTCAGAAAGAAGTTGAAGTCTCTCATTGACGAACAATAA 1040
||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 694 GAGGCACAAGAGATTCCTGAATTCAGACAGAGGTTGAAGTCTCTCATTGACGAACAATAA 753
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47920506669
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5