BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03840.1
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
Ahg487163 jgi|Araly1|487163|fgenesh2_kg.6__297__AT5G03840.1 996 0.0
> Ahg487163 jgi|Araly1|487163|fgenesh2_kg.6__297__AT5G03840.1
Length=634
Score = 996 bits (539), Expect = 0.0
Identities = 607/639 (95%), Gaps = 7/639 (1%)
Strand=Plus/Plus
Query 9 AAAAGAAAATGGAGAATATGGGAACTAGAGTGATAGAGCCATTGATAATGGGGAGAGTGG 68
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAA-AAAATGGAGAATATGGGAACTAGAGTGATAGAGCCATTGATAATGGGGAGAGTGG 59
Query 69 TAGGAGATGTTCTTGATTTCTTCACTCCAACAACTAAGATGAATGTTAGTTATAACAAGA 128
||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||
Sbjct 60 TAGGAGATGTTCTTGATTTCTTCACTCCAACAATTAAGATGAACGTGAGTTATAACAAGA 119
Query 129 AGCAAGTCTCCAATGGCCATGAGCTCTTTCCTTCTTCTGTTTCCTCCAAGCCTAGGGTTG 188
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 120 AGCAAGTCTCCAATGGCCATGAGCTCTTTCCTTCCTCTGTTTCCTCTAAGCCTAGGGTTG 179
Query 189 AGATCCATGGTGGTGATCTCAGATCCTTCTTCACTTTGGTGATGATAGACCCAGATGTTC 248
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 180 AGATCCATGGTGGTGATCTCAGATCCTTCTTCACTTTGGTGATGATTGATCCAGATGTTC 239
Query 249 CAGGTCCTAGTGACCCCTTTCTAAAAGAACACCTGCACTGGATCGTTACAAACATTCCCG 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 CAGGTCCTAGTGACCCCTTTCTAAAAGAACACCTGCACTGGATCGTTACAAACATTCCCG 299
Query 309 GCACAACAGATGCTACGTTTGGCAAAGAGGTGGTGAGCTATGAATTGCCAAGGCCAAGCA 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GCACAACAGATGCTACGTTTGGCAAAGAGGTGGTGAGCTATGAATTGCCAAGGCCAAGCA 359
Query 369 TAGGGATACATAGGTTTGTGTTTGTTCTGTTCAGGCAGAAGCAAAGACGTGTTATCTTTC 428
||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
Sbjct 360 TAGGGATACATAGGTTTGTGTTTGTTCTGTTCAAGCAGAAGCAAAGACGCGTTATCTTCC 419
Query 429 CTAATATCCCTTCGAGAGATCACTTCAACACTCGTAAATTTGCGGTCGAGTATGATCTTG 488
| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 CCAATATCCCTTCGAGAGATCACTTCAACACTCGTAAATTTGCGGTGGAGTATGATCTTG 479
Query 489 GTCTCCCTGTCGCGGCCGTCTTCTTTAACGCACAAAGAGAAACCGCTGCACGCAAACGCT 548
|||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 480 GTCTCCCTGTAGCGGCTGTCTTCTTTAACGCACAAAGAGAAACCGCTGCTCGCAAACGCT 539
Query 549 AGTTTCATGATTGTC-ATA-AACTGCAAAAATGAAAGAAGAAAATTTGCATGTAATCTCA 606
|||||||| |||||| || || ||| |||| |||||||||||| | |||||||||
Sbjct 540 AGTTTCATTATTGTCCATCGAA-TGCCAAAACGAAAGAAGAAAAAAT---TGTAATCTCC 595
Query 607 TGTTTATTTGTGTTCTGAATTTCCGTACTCTGAATAAAA 645
||||||||| ||||||||||| ||||||| |||||||||
Sbjct 596 TGTTTATTTATGTTCTGAATTCCCGTACTTTGAATAAAA 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24551158548
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5