BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G03850.1

Length=467
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg325035 jgi|Araly1|325035|fgenesh1_pm.C_scaffold_6000255           327    3e-89


> Ahg325035 jgi|Araly1|325035|fgenesh1_pm.C_scaffold_6000255
Length=195

 Score =  327 bits (177),  Expect = 3e-89
 Identities = 189/195 (97%), Gaps = 0/195 (0%)
 Strand=Plus/Plus

Query  71   ATGGATTCTCAGATCAAGCACGCTGTGGTGGTTAAGGTCATGGGTAGGACTGGTTCAAGG  130
            |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGATTCTCAGATTAAGCATGCTGTGGTGGTTAAGGTCATGGGTAGGACTGGTTCAAGG  60

Query  131  GGTCAGGTTACTCAGGTTCGAGTGAAGTTTACCGACTCTGATCGTTACATCATGAGGAAT  190
            |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  61   GGTCAGGTCACTCAGGTTCGAGTGAAGTTTACTGACTCTGATCGTTACATCATGAGGAAT  120

Query  191  GTTAAAGGACCAGTGAGGGAAGGTGATATCCTCACCTTGCTCGAGTCTGAGAGAGAAGCT  250
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTTAAAGGACCGGTGAGGGAAGGTGATATCCTCACCTTGCTCGAGTCTGAGAGAGAAGCT  180

Query  251  AGGAGACTTCGTTGA  265
            |||||||| ||||||
Sbjct  181  AGGAGACTCCGTTGA  195



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16902925927


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5