BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G03860.1
Length=1905
Score E
Sequences producing significant alignments: (Bits) Value
Ahg892301 jgi|Araly1|892301|Al_scaffold_0006_297 2649 0.0
> Ahg892301 jgi|Araly1|892301|Al_scaffold_0006_297
Length=1689
Score = 2649 bits (1434), Expect = 0.0
Identities = 1606/1691 (95%), Gaps = 4/1691 (0%)
Strand=Plus/Plus
Query 44 ATGGAGCTCGAGACCTCAGTTTATCGACCAAACGTCGCCGTTTATGATTCTCCGGATGGT 103
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGCTCGAGACCTCAGTTTATCGACCAAACGTCGCCGTCTATGATTCTCCGGATGGT 60
Query 104 GTGGAGGTTCGAGGACGGTACGACCAAATCTTCGCCAAGATTTTGACGAGAGAAGCTCTT 163
|| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 61 GTCGAGGTTCGAGGACGGTACGACCAAATCTTCGCTAAGATTTTGACAAGAGAAGCTCTT 120
Query 164 AGCTTTGTGGCTGAGTTACAGAGAGAGTTTCGTGGCCATGTGAAGTATGCCATGGAGTGC 223
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 AACTTTGTGGCTGAGTTACAGAGAGAGTTTCGTGGCCATGTGAGGTATGCCATGGAGTGC 180
Query 224 CGGAGAGAGGCAAGACGGCGTTATAACTCCGGTGCCGTTCCTGGGTTTGATCCTTCCACT 283
|||| ||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 CGGAAAGAGGCACGACGGCGTTACAACTCCGGTGCTGTTCCTGGGTTTGATCCTTCCACT 240
Query 284 AAGTTCATCAGAGACGGTGATTGGAGCTGTGCCTCCGTCCCTCCTGCCGTTGCTGACCGG 343
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 241 AAGTTCATCAGAGACGGTGATTGGATCTGTGCCTCCGTCCCTCCCGCCGTTGCTGACCGG 300
Query 344 AGAGTTGAGATCACCGGTCCGGTCGAGAGGAAGATGATCATCAACGCTCTTAACTCCGGA 403
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AGAGTTGAGATAACCGGTCCGGTCGAGAGGAAGATGATCATCAACGCTCTTAACTCCGGA 360
Query 404 GCTAAAGTCTTTATGGCTGATTTCGAGGACGCTTTGTCTCCAAGCTGGGAGAATCTGATG 463
||||||||||| |||||||||||||||||||| |||||||| || |||||||||||||||
Sbjct 361 GCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATG 420
Query 464 AGAGGGCATGTGAACCTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCA 523
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 421 AGAGGGCATGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCATGACAAGTCA 480
Query 524 AGGAACAGAGTTTACAAGCTCAACGACCAAACCGCTAAGCTTTTTGTCCGGCCAAGAGGT 583
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 481 AGGAACAGAGTTTATAAGCTCAACGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGT 540
Query 584 TGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTC 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTC 600
Query 644 GATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGG- 702
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGA 660
Query 703 TTTCGGTCCATTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAA 762
||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 661 TTT-GGTCCATTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATTTGGAA 719
Query 763 CAGTGTTTTTGAGCGTGCTGAGAAGATGGCTGGGATAGAGAGAGGAAGCATTAGAGCAAC 822
||| || |||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 CAGCGTGTTTGAGCGAGCTGAGAAGATGTCTGGGATAGAGAGAGGAAGCATTAGAGCAAC 779
Query 823 TGTGCTTATCGAGACCCTCCCGGCTGTCTTCCAGATGAATGAGATACTCTATGAACTACG 882
||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 780 AGTGCTGATCGAGACCCTCCCGGCTGTCTTCCAGATGAATGAGATACTATATGAACTGCG 839
Query 883 TGATCACTCAGTCGGTTTAAACTGTGGAAGATGGGATTATATCTTCAGCTATGTCAAAAC 942
||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 840 TGATCACACTGTCGGTTTAAACTGTGGAAGATGGGATTATATCTTCAGTTATGTCAAGAC 899
Query 943 CTTCCAAGCTCACCCTGACCGGCTCTTACCAGACCGTGTCCTAGTTGGCATGGGCCAGCA 1002
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 900 CTTCCAATCTCACCCTGACCGGCTCTTACCAGACCGTGTCCTAGTCGGCATGGGCCAGCA 959
Query 1003 TTTCATGAGAAGTTACTCTGATCTTCTCATCCGTACTTGTCATAAGCGCGGTGTCCACGC 1062
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 960 TTTCATGAGAAGTTACTCTGACCTTCTCATCCGTACTTGTCATAAGCGCGGTGTCCACGC 1019
Query 1063 CATGGGTGGCATGGCGGCTCAGATTCCGATAAGAGATGACCCAAAAGCGAATGAGATGGC 1122
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1020 TATGGGTGGCATGGCGGCTCAGATTCCAATAAGAGATGACCCGAAAGCGAATGAGATGGC 1079
Query 1123 ATTGGATCTAGTGAGGAAAGACAAGCTGAGAGAGGTAAGAGCAGGGCATGATGGAACATG 1182
||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| |||||
Sbjct 1080 ATTGGATCTAGTGAGGAAAGACAAGCTAAGAGAAGTAAGAGCTGGGCATGATGGGACATG 1139
Query 1183 GGCGGCTCATCCAGGACTCATCCCAATCTGCATGGAAGCATTCACTGGTCACATGGGAAA 1242
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| ||
Sbjct 1140 GGCGGCTCATCCAGGACTCATCCCAATATGCATGGAAGCATTCACAGGCCACATGGGCAA 1199
Query 1243 AAGTCCAAACCAAATCAAATCAGTGAAGCGCGAGGACGCAGCCGCAATAACAGAGGAAGA 1302
||||||||||||||||||||||||||||||||| || ||| |||| ||||||||||||||
Sbjct 1200 AAGTCCAAACCAAATCAAATCAGTGAAGCGCGAAGATGCATCCGCGATAACAGAGGAAGA 1259
Query 1303 TCTGCTTCAAATACCGCGAGGAGTGCGTACACTCGAGGGTTTAAGGCTGAACACACGTGT 1362
||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||
Sbjct 1260 TCTGCTTCAAATACCGCGAGGAGTGCGAACACTCGAGGGTCTAAGGCTGAACACACGTGT 1319
Query 1363 AGGAATTCAATACTTAGCCGCATGGTTAACAGGATCAGGATCTGTCCCACTCTATAACCT 1422
||||| |||||||||||||| ||||||||||||||||||||||||||||| || |||||
Sbjct 1320 GGGAATCCAATACTTAGCCGCGTGGTTAACAGGATCAGGATCTGTCCCACTATACAACCT 1379
Query 1423 AATGGAAGATGCTGCTACGGCTGAGATAAGCCGTGTCCAGAATTGGCAATGGATTAGGTA 1482
||||||||| || |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1380 AATGGAAGACGCGGCTACGGCTGAGATAAGCCGAGTCCAGAACTGGCAATGGATTAGGTA 1439
Query 1483 TGGAGTGGAACTTG-ATGGAGACGGGCTTGGAGTTCGAGTGAGTAAAGAGTTGTTTGGGA 1541
|||||||||| ||| ||||||||||||| |||||||| |||| ||||||||| |||||||
Sbjct 1440 TGGAGTGGAA-TTGGATGGAGACGGGCTCGGAGTTCGGGTGACTAAAGAGTTATTTGGGA 1498
Query 1542 GAGTTGTCGAAGAAGAGATGGAAAGAATTGAGAAAGAAGTTGGGAAAGACAAGTTTAAGA 1601
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1499 GAGTTGTGGAAGAAGAGATGGAAAGAATTGAGAAAGAAGTTGGGAAAGACAAGTTCAAGA 1558
Query 1602 ATGGAATGTATAAGGAAGCTTGCAAGATGTTTACAAAGCAGTGTACTGCACCTGAGCTTG 1661
| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1559 AAGGAATGTATAAGGAAGCTTGCAAGATGTTTACAAAGCAGTGTACCGCACCTGAACTTG 1618
Query 1662 ATGATTTTCTTACACTTGCTGTTTATAATCACATTGTAGCTCACTACCCTATCAATGTCT 1721
| ||||| || |||||||| || || |||||||||||||||||||||||||||||| ||
Sbjct 1619 ACGATTTCCTCACACTTGCCGTCTACAATCACATTGTAGCTCACTACCCTATCAATAACT 1678
Query 1722 CAAGGCTCTGA 1732
| |||||||||
Sbjct 1679 CTAGGCTCTGA 1689
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71571570355
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5