BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G03860.1 Length=1905 Score E Sequences producing significant alignments: (Bits) Value Ahg892301 jgi|Araly1|892301|Al_scaffold_0006_297 2649 0.0 > Ahg892301 jgi|Araly1|892301|Al_scaffold_0006_297 Length=1689 Score = 2649 bits (1434), Expect = 0.0 Identities = 1606/1691 (95%), Gaps = 4/1691 (0%) Strand=Plus/Plus Query 44 ATGGAGCTCGAGACCTCAGTTTATCGACCAAACGTCGCCGTTTATGATTCTCCGGATGGT 103 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 ATGGAGCTCGAGACCTCAGTTTATCGACCAAACGTCGCCGTCTATGATTCTCCGGATGGT 60 Query 104 GTGGAGGTTCGAGGACGGTACGACCAAATCTTCGCCAAGATTTTGACGAGAGAAGCTCTT 163 || |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| Sbjct 61 GTCGAGGTTCGAGGACGGTACGACCAAATCTTCGCTAAGATTTTGACAAGAGAAGCTCTT 120 Query 164 AGCTTTGTGGCTGAGTTACAGAGAGAGTTTCGTGGCCATGTGAAGTATGCCATGGAGTGC 223 | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 121 AACTTTGTGGCTGAGTTACAGAGAGAGTTTCGTGGCCATGTGAGGTATGCCATGGAGTGC 180 Query 224 CGGAGAGAGGCAAGACGGCGTTATAACTCCGGTGCCGTTCCTGGGTTTGATCCTTCCACT 283 |||| ||||||| |||||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 181 CGGAAAGAGGCACGACGGCGTTACAACTCCGGTGCTGTTCCTGGGTTTGATCCTTCCACT 240 Query 284 AAGTTCATCAGAGACGGTGATTGGAGCTGTGCCTCCGTCCCTCCTGCCGTTGCTGACCGG 343 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 241 AAGTTCATCAGAGACGGTGATTGGATCTGTGCCTCCGTCCCTCCCGCCGTTGCTGACCGG 300 Query 344 AGAGTTGAGATCACCGGTCCGGTCGAGAGGAAGATGATCATCAACGCTCTTAACTCCGGA 403 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 AGAGTTGAGATAACCGGTCCGGTCGAGAGGAAGATGATCATCAACGCTCTTAACTCCGGA 360 Query 404 GCTAAAGTCTTTATGGCTGATTTCGAGGACGCTTTGTCTCCAAGCTGGGAGAATCTGATG 463 ||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||| Sbjct 361 GCTAAAGTCTTCATGGCTGATTTCGAGGACGCATTGTCTCCGAGTTGGGAGAATCTGATG 420 Query 464 AGAGGGCATGTGAACCTGAAAGATGCAGTGGATGGATCCATTACGTTCCACGACAAGTCA 523 ||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 421 AGAGGGCATGTGAACTTGAAAGATGCAGTGGATGGATCCATTACGTTCCATGACAAGTCA 480 Query 524 AGGAACAGAGTTTACAAGCTCAACGACCAAACCGCTAAGCTTTTTGTCCGGCCAAGAGGT 583 |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 481 AGGAACAGAGTTTATAAGCTCAACGACCAAACCGCTAAGCTCTTTGTCCGGCCAAGAGGT 540 Query 584 TGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTC 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 541 TGGCATCTCCCGGAGGCTCACATCCTCATCGACGGTGAACCCGCCACTGGATGTCTTGTC 600 Query 644 GATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGG- 702 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 GATTTTGGCCTTTACTTCTTCCACAACTACGCCAAATTTAGACAGACTCAAGGTTCCGGA 660 Query 703 TTTCGGTCCATTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATATGGAA 762 ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 661 TTT-GGTCCATTCTTCTATCTCCCCAAAATGGAACATTCTAGGGAAGCAAAGATTTGGAA 719 Query 763 CAGTGTTTTTGAGCGTGCTGAGAAGATGGCTGGGATAGAGAGAGGAAGCATTAGAGCAAC 822 ||| || |||||||| |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 720 CAGCGTGTTTGAGCGAGCTGAGAAGATGTCTGGGATAGAGAGAGGAAGCATTAGAGCAAC 779 Query 823 TGTGCTTATCGAGACCCTCCCGGCTGTCTTCCAGATGAATGAGATACTCTATGAACTACG 882 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 780 AGTGCTGATCGAGACCCTCCCGGCTGTCTTCCAGATGAATGAGATACTATATGAACTGCG 839 Query 883 TGATCACTCAGTCGGTTTAAACTGTGGAAGATGGGATTATATCTTCAGCTATGTCAAAAC 942 ||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 840 TGATCACACTGTCGGTTTAAACTGTGGAAGATGGGATTATATCTTCAGTTATGTCAAGAC 899 Query 943 CTTCCAAGCTCACCCTGACCGGCTCTTACCAGACCGTGTCCTAGTTGGCATGGGCCAGCA 1002 ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 900 CTTCCAATCTCACCCTGACCGGCTCTTACCAGACCGTGTCCTAGTCGGCATGGGCCAGCA 959 Query 1003 TTTCATGAGAAGTTACTCTGATCTTCTCATCCGTACTTGTCATAAGCGCGGTGTCCACGC 1062 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 960 TTTCATGAGAAGTTACTCTGACCTTCTCATCCGTACTTGTCATAAGCGCGGTGTCCACGC 1019 Query 1063 CATGGGTGGCATGGCGGCTCAGATTCCGATAAGAGATGACCCAAAAGCGAATGAGATGGC 1122 |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| Sbjct 1020 TATGGGTGGCATGGCGGCTCAGATTCCAATAAGAGATGACCCGAAAGCGAATGAGATGGC 1079 Query 1123 ATTGGATCTAGTGAGGAAAGACAAGCTGAGAGAGGTAAGAGCAGGGCATGATGGAACATG 1182 ||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| Sbjct 1080 ATTGGATCTAGTGAGGAAAGACAAGCTAAGAGAAGTAAGAGCTGGGCATGATGGGACATG 1139 Query 1183 GGCGGCTCATCCAGGACTCATCCCAATCTGCATGGAAGCATTCACTGGTCACATGGGAAA 1242 ||||||||||||||||||||||||||| ||||||||||||||||| || |||||||| || Sbjct 1140 GGCGGCTCATCCAGGACTCATCCCAATATGCATGGAAGCATTCACAGGCCACATGGGCAA 1199 Query 1243 AAGTCCAAACCAAATCAAATCAGTGAAGCGCGAGGACGCAGCCGCAATAACAGAGGAAGA 1302 ||||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||| Sbjct 1200 AAGTCCAAACCAAATCAAATCAGTGAAGCGCGAAGATGCATCCGCGATAACAGAGGAAGA 1259 Query 1303 TCTGCTTCAAATACCGCGAGGAGTGCGTACACTCGAGGGTTTAAGGCTGAACACACGTGT 1362 ||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| Sbjct 1260 TCTGCTTCAAATACCGCGAGGAGTGCGAACACTCGAGGGTCTAAGGCTGAACACACGTGT 1319 Query 1363 AGGAATTCAATACTTAGCCGCATGGTTAACAGGATCAGGATCTGTCCCACTCTATAACCT 1422 ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||| Sbjct 1320 GGGAATCCAATACTTAGCCGCGTGGTTAACAGGATCAGGATCTGTCCCACTATACAACCT 1379 Query 1423 AATGGAAGATGCTGCTACGGCTGAGATAAGCCGTGTCCAGAATTGGCAATGGATTAGGTA 1482 ||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 1380 AATGGAAGACGCGGCTACGGCTGAGATAAGCCGAGTCCAGAACTGGCAATGGATTAGGTA 1439 Query 1483 TGGAGTGGAACTTG-ATGGAGACGGGCTTGGAGTTCGAGTGAGTAAAGAGTTGTTTGGGA 1541 |||||||||| ||| ||||||||||||| |||||||| |||| ||||||||| ||||||| Sbjct 1440 TGGAGTGGAA-TTGGATGGAGACGGGCTCGGAGTTCGGGTGACTAAAGAGTTATTTGGGA 1498 Query 1542 GAGTTGTCGAAGAAGAGATGGAAAGAATTGAGAAAGAAGTTGGGAAAGACAAGTTTAAGA 1601 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1499 GAGTTGTGGAAGAAGAGATGGAAAGAATTGAGAAAGAAGTTGGGAAAGACAAGTTCAAGA 1558 Query 1602 ATGGAATGTATAAGGAAGCTTGCAAGATGTTTACAAAGCAGTGTACTGCACCTGAGCTTG 1661 | |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1559 AAGGAATGTATAAGGAAGCTTGCAAGATGTTTACAAAGCAGTGTACCGCACCTGAACTTG 1618 Query 1662 ATGATTTTCTTACACTTGCTGTTTATAATCACATTGTAGCTCACTACCCTATCAATGTCT 1721 | ||||| || |||||||| || || |||||||||||||||||||||||||||||| || Sbjct 1619 ACGATTTCCTCACACTTGCCGTCTACAATCACATTGTAGCTCACTACCCTATCAATAACT 1678 Query 1722 CAAGGCTCTGA 1732 | ||||||||| Sbjct 1679 CTAGGCTCTGA 1689 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 71571570355 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5